Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012291

Physical Location & Seq

Genomic Coordinates Reverse (-)

5755830 .. 5759810

Gene Structure 3981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1035900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGCGGCGGCGGTATCCGGTCCGGTGGCTCAACCAGTGTCTCCGGCCGCTCAACAGGCGCCGCCGGTTGCGGCTCCGGCGGTTTATGGGAACGTGTCGCTGTACGTAGGCGATCTGGACCCGAGTGTGAACGAAGCGCAGCTGTACGATCTGTTCAACCAAATGGGGCAGATCGTTTCGATTCGGGTCTGTCGGGATCAGAACCGCATGCAATCCCTCGGCTATGCCTACGTTAATTACGGCGATCCTCAGCACGCTGCTAATGCTCTGGAAGTGTTGAATTTTACTCCAATCAATGGGAAACCCATTAGGATTATGTACTCTCATCGAGATCCAAGCATTCGGAAGAGCGGAAAGGCCAATGTATTCATTAAGAACCTGGACAAAAGTATTGATCATAAGGCGTTATTGGACACTTTTTCAACCTTTGGCAACGTTCTTTCTTGCAAGGTTGCACTTGATAGCAACGGTCAATCGAAAGGCTATGGGTTCGTACAGTTTGACAATGAGGAATCTGCACAGGAGGCAATCAAGAAGCTGAATAAAATGCTGATAAATGGAAAACTGGTTTATGTAGGACTTTTTCAACGAGGCCAGGAGAGGAATCGGCAAAATGGATCACCACATTTCACTAATGTTTATGTTAAAAATTTGTCGGAGACAACTACAGATGAAGACGTTAAGAAAATTATGGGCGAGCATGGTAACATTACTAGTGCGGTTGTTATGAGGGATGGTTCTGGAAAGTCTAGATGTTTTGGTTTTGTTAACTTTGAGAAGCCAGAAGCAGCAGCTGCTGCAATTGAGAAGTTGAATGGGAGCACCATTAGTGGTGACAAGGTTTTATTTGTCGGGAGGGCTCAAAGGAAATCCGAGAGGGAGGCAGAGTTGAGAGCTAAGTTTGAACAGGAAAGACTCAGTAGATTTGAGAAGCTACAAGGTGCTAATTTATATCTCAAAAATCTCGATGACACAATAAATGATGAAAAACTAAAGGAGCTATTTTCTGAATTTGGAACAATAGCATCGTGCAAGGTCATGCTTGATCAGCAAGGGGTGAGCAAGGGTTCTGGATTTGTTGCATTTTCTACTCCAGAGGAAGCCAATAAAGCCTTGGCTGAAATGAATGGCAAGATGATTGGACGAAAGCCTCTGTATGTCGCTGTGGCCCAACGCAAAGAAGAGCGAAAGGCTCGATTACAGGCACGCTTTGCCCAAATCCGAGCACCAGGTGGAATGACACCATTGCCATCAGGACTTCCTGGTTATCATCCTGGGGCACCTAGACTTGCCCCTCAACAATTGTATTATGGTCAAGGTTCTCCTGGCCTTCTACCCCAACAGCCTGCTGGTTATGGCTTCCAGCAGCAGCTCTTGCCTGGCATGCGCCCTGGTGTTGGTCCAAACTTCATCATGCCATACCACCTTCAGAGGCAAGGTCAACCTGGGCAGCGAATGGGTGCACGTCGAGGTGGGAACCTCCAACATGTGCAGCAGCAGCAGCAGTTACTGCACCGTCACTCCAATCAAGGCTTCAGATACATGGGAAATGCACGGAATGGAGTGGACCCATCTTTGGCTCCTCAAGGTCATATGGGTCCAATGATGCCTTTGCCACTTGACGGTGCAGGGCTGCCTGTGACTCCTAATGATATCCATCGTTCTGGGCCTTTGCCAATGTCAACACTTGCTTCAGCTTTAGCTTCTGCTACCCCAGAGAATCAGCGTTTGATGCTGGGCGAACAACTATATCCACTTGTTGAGCGCATTGAACCTGAACACACGGCTAAGGTGACTGGGATGTTGCTAGAGATGGATCAGACGGAGGTTCTCCATCTGATTGAGTCTCCAGATGCCTTGAAGGCCAAGGTAGCTGAGGCAATGGATGTTCTGGATAAAGCTACAACGAAGTCTGAAGTTACTGATCAGCTTGGTGCATTGGATCTGAATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000288 GO:0000289 GO:0000956 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008143 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0031323 GO:0031329 GO:0034641 GO:0034645 GO:0034655 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060211 GO:0060255 GO:0061013 GO:0065007 GO:0070717 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:1900151 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1903311

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

652

Amino Acids

71.17

Weight (kDa)

8.91

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 104	2.9e-17	RNA recognition motif
RRM_1	PF00076	122 - 190	5.4e-21	RNA recognition motif
RRM_1	PF00076	213 - 280	5.7e-20	RNA recognition motif
RRM_1	PF00076	317 - 385	2.5e-20	RNA recognition motif
MLLE	PF00658	566 - 631	6.3e-29	MLLE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22760 AT1G71770 AT1G71770
fragaria_vesca	FvH4_2g12840
malus_domestica	MD05G1035900.v1.1 MD10G1038000.v1.1
prunus_persica	Prupe.8G043700_v2.0.a1
pyrus_communis	pycom05g02640 pycom10g02600
rosa_chinensis	RchiOBHm_Chr6g0273861
rosa_laevigata	RLG00000013594
rosa_multiflora	Rmu_ssc0000322.1_g000029
rosa_roxburghii	Rroxscaffold_7G00194960
rosa_rugosa	Rorug06G0077500
rosa_samantha	Rh6AG193000 Rh6BG196900 Rh6CG196100 Rh6DG188100
rosa_wichuraiana	Rw6G016820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 1279
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccBSI	CCGCTC	2 cut(s)	50, 351
AclI	AACGTT	1 cut(s)	435
AclWI	GGATC	6 cut(s)	204, 239, 326, 625, 1824, 1950
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	280, 649, 1010
AcuI	CTGAAG	4 cut(s)	1412, 1519, 1677, 1935
AcyI	GRCGYC	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	1232
AfaI	GTAC	4 cut(s)	104, 146, 320, 495
AfiI	CCNNNNNNNGG	4 cut(s)	296, 1397, 1576, 1622
AflIII	ACRYGT	2 cut(s)	93, 1486
AgsI	TTSAA	8 cut(s)	157, 280, 423, 587, 814, 905, 1772, 1861
AhlI	ACTAGT	1 cut(s)	713
AjiI	CACGTC	1 cut(s)	1466
AjnI	CCWGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
AjuI	GAANNNNNNNTTGG	2 cut(s)	1517, 1549
Alw21I	GWGCWC	3 cut(s)	824, 1228, 1465
Alw26I	GTCTC	3 cut(s)	45, 653, 1851
Alw44I	GTGCAC	1 cut(s)	1461
AlwI	GGATC	6 cut(s)	204, 239, 326, 625, 1824, 1950
AlwNI	CAGNNNCTG	3 cut(s)	794, 797, 1510
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	7 cut(s)	45, 357, 592, 1167, 1327, 1667, 1863
ApaLI	GTGCAC	1 cut(s)	1461
ApoI	RAATTY	3 cut(s)	280, 649, 1010
AspLEI	GCGC	4 cut(s)	61, 139, 1389, 1767
AspS9I	GGNCC	7 cut(s)	20, 118, 1168, 1400, 1567, 1598, 1667
AsuHPI	GGTGA	4 cut(s)	612, 845, 1069, 1804
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	5 cut(s)	20, 118, 1400, 1567, 1598
BaeGI	GKGCMC	2 cut(s)	1282, 1465
BanI	GGYRCC	2 cut(s)	58, 1279
BanII	GRGCYC	1 cut(s)	862
BbsI	GAAGAC	1 cut(s)	681
Bbv12I	GWGCWC	3 cut(s)	824, 1228, 1465
BbvCI	CCTCAGC	2 cut(s)	249, 1875
BccI	CCATC	6 cut(s)	728, 1258, 1579, 1665, 1807, 1842
BceAI	ACGGC	2 cut(s)	256, 1800
BciT130I	CCWGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
BciVI	GTATCC	1 cut(s)	25
BclI	TGATCA	3 cut(s)	394, 1045, 1924
BcoDI	GTCTC	3 cut(s)	45, 653, 1851
BcuI	ACTAGT	1 cut(s)	713
BfaI	CTAG	4 cut(s)	714, 750, 1284, 1808
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	62
BfuI	GTATCC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	1862
Bme1390I	CCNGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
Bme18I	GGWCC	5 cut(s)	20, 118, 1400, 1567, 1598
BmeT110I	CYCGRG	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	1466
BmgT120I	GGNCC	7 cut(s)	20, 118, 1168, 1400, 1567, 1598, 1667
BmiI	GGNNCC	8 cut(s)	60, 75, 120, 1281, 1478, 1569, 1581, 1599
BmrFI	CCNGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
BmrI	ACTGGG	1 cut(s)	1806
BmsI	GCATC	4 cut(s)	1034, 1596, 1722, 1843
BmuI	ACTGGG	1 cut(s)	1806
BpiI	GAAGAC	1 cut(s)	681
BpmI	CTGGAG	2 cut(s)	1077, 1833
Bpu10I	CCTNAGC	3 cut(s)	249, 1788, 1875
BpuEI	CTTGAG	1 cut(s)	1569
BsaAI	YACGTR	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	1656
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	6 cut(s)	217, 1113, 1274, 1390, 1445, 1866
BsaWI	WCCGGW	2 cut(s)	17, 22
BsaXI	ACNNNNNCTCC	4 cut(s)	872, 902, 1505, 1535
Bsc4I	CCNNNNNNNGG	4 cut(s)	296, 1397, 1576, 1622
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	3 cut(s)	35, 570, 1801
Bse3DI	GCAATG	2 cut(s)	1244, 1887
Bse8I	GATNNNNATC	1 cut(s)	1656
BseBI	CCWGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
BseDI	CCNNGG	6 cut(s)	217, 1113, 1274, 1390, 1445, 1866
BseGI	GGATG	4 cut(s)	739, 1270, 1806, 1891
BseJI	GATNNNNATC	1 cut(s)	1656
BseLI	CCNNNNNNNGG	4 cut(s)	296, 1397, 1576, 1622
BseMI	GCAATG	2 cut(s)	1244, 1887
BseMII	CTCAG	3 cut(s)	263, 931, 1866
BseNI	ACTGG	3 cut(s)	35, 570, 1801
BseRI	GAGGAG	1 cut(s)	1572
BseSI	GKGCMC	2 cut(s)	1282, 1465
BseX3I	CGGCCG	1 cut(s)	45
BseYI	CCCAGC	1 cut(s)	1735
BsgI	GTGCAG	4 cut(s)	501, 1496, 1511, 1647
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	7 cut(s)	47, 359, 594, 1169, 1329, 1669, 1865
BshNI	GGYRCC	2 cut(s)	58, 1279
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	3 cut(s)	824, 1228, 1465
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	5 cut(s)	18, 23, 44, 65, 77
BslI	CCNNNNNNNGG	4 cut(s)	296, 1397, 1576, 1622
BsmAI	GTCTC	3 cut(s)	45, 653, 1851
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	7 cut(s)	47, 359, 594, 1169, 1329, 1669, 1865
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	5 cut(s)	824, 862, 1228, 1282, 1465
BspANI	GGCC	7 cut(s)	47, 359, 594, 1169, 1329, 1669, 1865
BspCNI	CTCAG	3 cut(s)	262, 930, 1867
BspLI	GGNNCC	8 cut(s)	60, 75, 120, 1281, 1478, 1569, 1581, 1599
BspPI	GGATC	6 cut(s)	204, 239, 326, 625, 1824, 1950
BspQI	GCTCTTC	2 cut(s)	341, 1176
BspT107I	GGYRCC	2 cut(s)	58, 1279
BsrBI	CCGCTC	2 cut(s)	50, 351
BsrDI	GCAATG	2 cut(s)	1244, 1887
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	3 cut(s)	35, 570, 1801
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	6 cut(s)	217, 1113, 1274, 1390, 1445, 1866
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	1113, 1866
Bst2UI	CCWGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
Bst4CI	ACNGT	4 cut(s)	470, 498, 1517, 1625
Bst6I	CTCTTC	2 cut(s)	341, 1176
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	5 cut(s)	794, 797, 1211, 1375, 1510
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	6 cut(s)	209, 255, 698, 1207, 1347, 1385
BstDEI	CTNAG	5 cut(s)	249, 897, 917, 1788, 1875
BstF5I	GGATG	4 cut(s)	739, 1270, 1806, 1891
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	4 cut(s)	61, 139, 1389, 1767
BstMAI	GTCTC	3 cut(s)	45, 653, 1851
BstMCI	CGRYCG	1 cut(s)	48
BstNI	CCWGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
BstNSI	RCATGY	3 cut(s)	211, 1387, 1490
BstSCI	CCNGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
BstSFI	CTRYAG	1 cut(s)	666
BstSLI	GKGCMC	2 cut(s)	1282, 1465
BstSNI	TACGTA	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	681
BstX2I	RGATCY	2 cut(s)	331, 1942
BstXI	CCANNNNNNTGG	1 cut(s)	1664
BstYI	RGATCY	2 cut(s)	331, 1942
BstZI	CGGCCG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	25
BsuRI	GGCC	7 cut(s)	47, 359, 594, 1169, 1329, 1669, 1865
BtrI	CACGTC	1 cut(s)	1466
BtsCI	GGATG	4 cut(s)	739, 1270, 1806, 1891
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	6 cut(s)	209, 255, 698, 1207, 1347, 1385
CaiI	CAGNNNCTG	3 cut(s)	794, 797, 1510
CfoI	GCGC	4 cut(s)	61, 139, 1389, 1767
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	7 cut(s)	20, 118, 1168, 1400, 1567, 1598, 1667
CpoI	CGGWCCG	1 cut(s)	20
CsiI	ACCWGGT	1 cut(s)	1228
Csp6I	GTAC	4 cut(s)	103, 145, 319, 494
CspI	CGGWCCG	1 cut(s)	20
CviAII	CATG	7 cut(s)	208, 701, 1039, 1384, 1414, 1487, 1543
CviQI	GTAC	4 cut(s)	103, 145, 319, 494
DdeI	CTNAG	5 cut(s)	249, 897, 917, 1788, 1875
DinI	GGCGCC	1 cut(s)	60
DraIII	CACNNNGTG	1 cut(s)	1232
EaeI	YGGCCR	1 cut(s)	45
EagI	CGGCCG	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	341, 1176
EarI	CTCTTC	2 cut(s)	341, 1176
EclXI	CGGCCG	1 cut(s)	45
Eco105I	TACGTA	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	1113, 1866
Eco24I	GRGCYC	1 cut(s)	862
Eco32I	GATATC	1 cut(s)	1654
Eco47I	GGWCC	5 cut(s)	20, 118, 1400, 1567, 1598
Eco52I	CGGCCG	1 cut(s)	45
Eco57I	CTGAAG	4 cut(s)	1412, 1519, 1677, 1935
Eco88I	CYCGRG	1 cut(s)	121
EcoRII	CCWGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
EcoRV	GATATC	1 cut(s)	1654
EcoT14I	CCWWGG	2 cut(s)	1113, 1866
EcoT38I	GRGCYC	1 cut(s)	862
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	1113, 1866
FaeI	CATG	7 cut(s)	211, 704, 1042, 1387, 1417, 1490, 1546
FatI	CATG	7 cut(s)	207, 700, 1038, 1383, 1413, 1486, 1542
FauNDI	CATATG	1 cut(s)	1593
FbaI	TGATCA	3 cut(s)	394, 1045, 1924
FokI	GGATG	4 cut(s)	746, 1257, 1813, 1898
FriOI	GRGCYC	1 cut(s)	862
FspBI	CTAG	4 cut(s)	714, 750, 1284, 1808
GlaI	GCGC	4 cut(s)	60, 138, 1388, 1766
GsaI	CCCAGC	1 cut(s)	1739
GsuI	CTGGAG	2 cut(s)	1077, 1833
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	7 cut(s)	47, 359, 594, 1169, 1329, 1669, 1865
HapII	CCGG	5 cut(s)	18, 23, 44, 65, 77
HhaI	GCGC	4 cut(s)	61, 139, 1389, 1767
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	7 cut(s)	211, 704, 1042, 1387, 1417, 1490, 1546
Hin6I	GCGC	4 cut(s)	59, 137, 1387, 1765
HinP1I	GCGC	4 cut(s)	59, 137, 1387, 1765
HincII	GTYRAC	3 cut(s)	769, 1442, 1683
HindII	GTYRAC	3 cut(s)	769, 1442, 1683
HinfI	GANTC	7 cut(s)	181, 512, 604, 915, 1642, 1720, 1844
HpaI	GTTAAC	1 cut(s)	769
HpaII	CCGG	5 cut(s)	18, 23, 44, 65, 77
HphI	GGTGA	4 cut(s)	612, 845, 1069, 1804
Hpy166II	GTNNAC	6 cut(s)	130, 769, 1442, 1463, 1567, 1683
Hpy8I	GTNNAC	6 cut(s)	130, 769, 1442, 1463, 1567, 1683
Hpy99I	CGWCG	1 cut(s)	1470
HpyAV	CCTTC	3 cut(s)	1340, 1436, 1855
HpyCH4III	ACNGT	4 cut(s)	470, 498, 1517, 1625
HpyCH4IV	ACGT	6 cut(s)	93, 105, 231, 435, 678, 1465
HpyF3I	CTNAG	5 cut(s)	249, 897, 917, 1788, 1875
HpySE526I	ACGT	6 cut(s)	93, 105, 231, 435, 678, 1465
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	7 cut(s)	211, 704, 1042, 1387, 1417, 1490, 1546
HspAI	GCGC	4 cut(s)	59, 137, 1387, 1765
KasI	GGCGCC	1 cut(s)	58
Ksp22I	TGATCA	3 cut(s)	394, 1045, 1924
KspAI	GTTAAC	1 cut(s)	769
LguI	GCTCTTC	2 cut(s)	341, 1176
LmnI	GCTCC	4 cut(s)	79, 819, 997, 1585
LweI	GCATC	4 cut(s)	1034, 1596, 1722, 1843
MabI	ACCWGGT	1 cut(s)	1228
MaeI	CTAG	4 cut(s)	714, 750, 1284, 1808
MaeII	ACGT	6 cut(s)	93, 105, 231, 435, 678, 1465
MaeIII	GTNAC	7 cut(s)	704, 833, 1506, 1517, 1639, 1792, 1918
MbiI	CCGCTC	2 cut(s)	50, 351
MboII	GAAGA	3 cut(s)	358, 686, 1193
MfeI	CAATTG	2 cut(s)	801, 1301
MflI	RGATCY	2 cut(s)	331, 1942
MhlI	GDGCHC	5 cut(s)	824, 862, 1228, 1282, 1465
MluCI	AATT	8 cut(s)	235, 280, 649, 687, 801, 946, 1010, 1301
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	909, 1636, 1853
MmeI	TCCRAC	2 cut(s)	636, 1507
MseI	TTAA	5 cut(s)	234, 372, 645, 681, 768
MspA1I	CMGCKG	2 cut(s)	142, 794
MspI	CCGG	5 cut(s)	18, 23, 44, 65, 77
MspR9I	CCNGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
MunI	CAATTG	2 cut(s)	801, 1301
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
NarI	GGCGCC	1 cut(s)	59
NdeI	CATATG	1 cut(s)	1593
NlaIII	CATG	7 cut(s)	211, 704, 1042, 1387, 1417, 1490, 1546
NlaIV	GGNNCC	8 cut(s)	60, 75, 120, 1281, 1478, 1569, 1581, 1599
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	4 cut(s)	833, 1517, 1639, 1792
NspI	RCATGY	3 cut(s)	211, 1387, 1490
PaeI	GCATGC	2 cut(s)	211, 1387
PciI	ACATGT	1 cut(s)	1486
PciSI	GCTCTTC	2 cut(s)	341, 1176
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	4 cut(s)	181, 512, 604, 1720
PflMI	CCANNNNNTGG	1 cut(s)	296
PleI	GAGTC	3 cut(s)	909, 1636, 1852
PluTI	GGCGCC	1 cut(s)	62
PpsI	GAGTC	3 cut(s)	909, 1636, 1852
Ppu21I	YACGTR	1 cut(s)	106
PscI	ACATGT	1 cut(s)	1486
Psp1406I	AACGTT	1 cut(s)	435
Psp6I	CCWGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
PspFI	CCCAGC	1 cut(s)	1735
PspGI	CCWGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
PspN4I	GGNNCC	8 cut(s)	60, 75, 120, 1281, 1478, 1569, 1581, 1599
PspPI	GGNCC	7 cut(s)	20, 118, 1168, 1400, 1567, 1598, 1667
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PstNI	CAGNNNCTG	3 cut(s)	794, 797, 1510
PsuI	RGATCY	2 cut(s)	331, 1942
PvuII	CAGCTG	2 cut(s)	142, 794
RsaI	GTAC	4 cut(s)	104, 146, 320, 495
RsaNI	GTAC	4 cut(s)	103, 145, 319, 494
Rsr2I	CGGWCCG	1 cut(s)	20
RsrII	CGGWCCG	1 cut(s)	20
SapI	GCTCTTC	2 cut(s)	341, 1176
SaqAI	TTAA	5 cut(s)	234, 372, 645, 681, 768
Sau96I	GGNCC	7 cut(s)	20, 118, 1168, 1400, 1567, 1598, 1667
SchI	GAGTC	3 cut(s)	909, 1636, 1853
ScrFI	CCNGG	9 cut(s)	380, 596, 1230, 1263, 1275, 1326, 1380, 1392, 1446
SduI	GDGCHC	5 cut(s)	824, 862, 1228, 1282, 1465
SexAI	ACCWGGT	1 cut(s)	1228
SfaNI	GCATC	4 cut(s)	1034, 1596, 1722, 1843
SfcI	CTRYAG	1 cut(s)	666
SfoI	GGCGCC	1 cut(s)	60
SinI	GGWCC	5 cut(s)	20, 118, 1400, 1567, 1598
SmlI	CTYRAG	1 cut(s)	1584
SmoI	CTYRAG	1 cut(s)	1584
SnaBI	TACGTA	1 cut(s)	106
SpeI	ACTAGT	1 cut(s)	713
SphI	GCATGC	2 cut(s)	211, 1387
Sse9I	AATT	8 cut(s)	235, 280, 649, 687, 801, 946, 1010, 1301
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	4 cut(s)	714, 750, 1284, 1808
StyD4I	CCNGG	9 cut(s)	378, 594, 1228, 1261, 1273, 1324, 1378, 1390, 1444
StyI	CCWWGG	2 cut(s)	1113, 1866
TaaI	ACNGT	4 cut(s)	470, 498, 1517, 1625
TaiI	ACGT	6 cut(s)	96, 108, 234, 438, 681, 1468
TaqI	TCGA	6 cut(s)	179, 328, 476, 966, 1195, 1468
TasI	AATT	8 cut(s)	235, 280, 649, 687, 801, 946, 1010, 1301
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	5 cut(s)	8, 11, 50, 64, 74
TfiI	GAWTC	4 cut(s)	181, 512, 604, 1720
Tru1I	TTAA	5 cut(s)	234, 372, 645, 681, 768
Tru9I	TTAA	5 cut(s)	234, 372, 645, 681, 768
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	4 cut(s)	833, 1517, 1639, 1792
Tsp45I	GTSAC	4 cut(s)	833, 1517, 1639, 1792
TspDTI	ATGAA	5 cut(s)	358, 687, 999, 1139, 1399
TspGWI	ACGGA	2 cut(s)	1570, 1838
TspRI	CASTG	1 cut(s)	42
Van91I	CCANNNNNTGG	1 cut(s)	296
VneI	GTGCAC	1 cut(s)	1461
VpaK11BI	GGWCC	5 cut(s)	20, 118, 1400, 1567, 1598
XapI	RAATTY	3 cut(s)	280, 649, 1010
XbaI	TCTAGA	1 cut(s)	749
XceI	RCATGY	3 cut(s)	211, 1387, 1490
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1111, 1346
XspI	CTAG	4 cut(s)	714, 750, 1284, 1808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.