Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014380

Physical Location & Seq

Genomic Coordinates Forward (+)

5995831 .. 5996445

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1037500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTTCCTGATGTGGTACTCTGGCAAACTTTACTTGGTGCTAGCAAGACTTATAGGAATGTGGAGATGGCAGAACTGGCTTCTCAGAAACTGATTGAGATGGGGTCTAAGGGTTGTGGTGATTTCGTGTTGTTATCAAATGTTTACGCATCTCAAAAGAGATGGGACGATGTGGGCAGGGTGAGGGAGACCATGAGGAGAAGAGATGTGAAGAAGATATCGAGTTTGGGTTACATAGAAGTGGAAGGTGTGATACGCAAGTTCGTGAATGGTGACCAGAGCCATGTTAATCGGGGTGAGATTTATGCAAAGCTAGATGAGATCATGTTCAGGATTAAGGCCTACAGATATGCAGCTAAGACCAATAATGTGCTGCATGATATAGGGGAGGAGGAAAAAGAAAATGCATTGAGTTATCACTGCGAGAAATTGGTTGTGGCTTTTGGTTTGATTAGTACCAGTGAGGGGACACCAATTCAAGTGATTAAGAACCTAAGAATATGCGACGATCGCCATGTTGTGAGCAAACTTATTTCGAAGGTTTATAATAGGGAAATAATTGTGAGGTATCGAGCCCAGTTTCATAGATTTAAAGAAGGATTATGCTCTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 ThiC_Rad_SAM

Protein Analysis

205

Amino Acids

23.5

Weight (kDa)

9.15

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	18 - 78	2.2e-17	E motif
DYW_deaminase	PF14432	117 - 204	2.5e-31	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0014380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34160 AT1G34160
fragaria_vesca	FvH4_2g12730
malus_domestica	MD05G1037500.v1.1 MD10G1041300.v1.1
prunus_persica	Prupe.8G045500_v2.0.a1 Prupe.8G045500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273501
rosa_laevigata	RLG00000013612
rosa_multiflora	Rmu_co8087438.1_g000001 Rmu_sc0026438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195290
rosa_rugosa	Rorug06G0075900
rosa_samantha	Rh6AG190600 Rh6BG194100 Rh6DG185200
rosa_wichuraiana	Rw6G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	546
AfaI	GTAC	2 cut(s)	18, 457
AfiI	CCNNNNNNNGG	1 cut(s)	465
AgsI	TTSAA	1 cut(s)	479
AluBI	AGCT	2 cut(s)	313, 356
AluI	AGCT	2 cut(s)	313, 356
Alw26I	GTCTC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	2 cut(s)	353, 373
AsuHPI	GGTGA	4 cut(s)	131, 193, 284, 308
AsuII	TTCGAA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	41
BaeI	ACNNNNGTAYC	2 cut(s)	245, 278
BanII	GRGCYC	1 cut(s)	577
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
BbvI	GCAGC	2 cut(s)	360, 365
BccI	CCATC	3 cut(s)	61, 94, 156
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	2 cut(s)	42, 314
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	354, 374
BlsI	GCNGC	2 cut(s)	355, 375
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	1 cut(s)	158
BmtI	GCTAGC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	571
Bpu14I	TTCGAA	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	3 cut(s)	81, 459, 577
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	3 cut(s)	81, 459, 577
BseRI	GAGGAG	2 cut(s)	211, 404
BseXI	GCAGC	2 cut(s)	360, 365
Bsh1285I	CGRYCG	1 cut(s)	511
BshFI	GGCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	179, 481
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	2 cut(s)	179, 481
BsnI	GGCC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	577
Bsp143I	GATC	2 cut(s)	321, 508
BspANI	GGCC	1 cut(s)	341
BspCNI	CTCAG	1 cut(s)	97
BspOI	GCTAGC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	81, 459, 577
BssMI	GATC	2 cut(s)	321, 508
Bst6I	CTCTTC	1 cut(s)	196
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	4 cut(s)	84, 108, 357, 494
BstEII	GGTNACC	1 cut(s)	272
BstKTI	GATC	2 cut(s)	324, 511
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	2 cut(s)	321, 508
BstMCI	CGRYCG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 510
BstPI	GGTNACC	1 cut(s)	272
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	360, 365
BsuRI	GGCC	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	418, 466
Cac8I	GCNNGC	1 cut(s)	43
CaiI	CAGNNNCTG	1 cut(s)	91
Csp6I	GTAC	2 cut(s)	17, 456
CviAII	CATG	5 cut(s)	193, 284, 325, 377, 515
CviJI	RGCY	7 cut(s)	80, 282, 313, 341, 356, 440, 575
CviKI_1	RGCY	7 cut(s)	80, 282, 313, 341, 356, 440, 575
CviQI	GTAC	2 cut(s)	17, 456
DdeI	CTNAG	4 cut(s)	84, 108, 357, 494
DpnI	GATC	2 cut(s)	323, 510
DpnII	GATC	2 cut(s)	321, 508
DraI	TTTAAA	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	577
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	272
EcoO65I	GGTNACC	1 cut(s)	272
EcoRV	GATATC	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	577
FaeI	CATG	5 cut(s)	196, 287, 328, 380, 518
FaqI	GGGAC	2 cut(s)	179, 481
FatI	CATG	5 cut(s)	192, 283, 324, 376, 514
Fnu4HI	GCNGC	2 cut(s)	354, 374
FriOI	GRGCYC	1 cut(s)	577
Fsp4HI	GCNGC	2 cut(s)	354, 374
FspBI	CTAG	2 cut(s)	42, 314
GluI	GCNGC	2 cut(s)	354, 374
HaeIII	GGCC	1 cut(s)	341
Hin1II	CATG	5 cut(s)	196, 287, 328, 380, 518
HphI	GGTGA	4 cut(s)	131, 193, 284, 308
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	8, 265, 331
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	3 cut(s)	239, 532, 590
HpyCH4V	TGCA	4 cut(s)	308, 353, 376, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 510
HpyF3I	CTNAG	4 cut(s)	84, 108, 357, 494
Hsp92II	CATG	5 cut(s)	196, 287, 328, 380, 518
Kzo9I	GATC	2 cut(s)	321, 508
LpnPI	CCDG	8 cut(s)	7, 21, 62, 163, 290, 316, 472, 590
Lsp1109I	GCAGC	2 cut(s)	360, 365
LweI	GCATC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	42, 314
MaeIII	GTNAC	2 cut(s)	230, 272
MalI	GATC	2 cut(s)	323, 510
MboI	GATC	2 cut(s)	321, 508
MboII	GAAGA	3 cut(s)	213, 223, 226
MhlI	GDGCHC	1 cut(s)	577
MluCI	AATT	3 cut(s)	428, 474, 558
MnlI	CCTC	6 cut(s)	177, 189, 382, 385, 457, 558
Mph1103I	ATGCAT	1 cut(s)	409
MseI	TTAA	4 cut(s)	288, 336, 486, 591
MslI	CAYNNNNRTG	1 cut(s)	239
MwoI	GCNNNNNNNGC	2 cut(s)	77, 510
NdeII	GATC	2 cut(s)	321, 508
NheI	GCTAGC	1 cut(s)	41
NlaIII	CATG	5 cut(s)	196, 287, 328, 380, 518
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	409
NspV	TTCGAA	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	355, 375
Ple19I	CGATCG	1 cut(s)	511
PsiI	TTATAA	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	511
RsaI	GTAC	2 cut(s)	18, 457
RsaNI	GTAC	2 cut(s)	17, 456
RseI	CAYNNNNRTG	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	288, 336, 486, 591
SatI	GCNGC	2 cut(s)	354, 374
Sau3AI	GATC	2 cut(s)	321, 508
SduI	GDGCHC	1 cut(s)	577
SetI	ASST	6 cut(s)	250, 315, 358, 495, 543, 569
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	3 cut(s)	428, 474, 558
SseBI	AGGCCT	1 cut(s)	341
SspMI	CTAG	2 cut(s)	42, 314
StuI	AGGCCT	1 cut(s)	341
TaqI	TCGA	3 cut(s)	221, 536, 571
TasI	AATT	3 cut(s)	428, 474, 558
Tru1I	TTAA	4 cut(s)	288, 336, 486, 591
Tru9I	TTAA	4 cut(s)	288, 336, 486, 591
TscAI	CASTG	2 cut(s)	425, 466
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	353, 373
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	572
TspRI	CASTG	2 cut(s)	425, 466
XspI	CTAG	2 cut(s)	42, 314
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.