Rorug06G0075900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014380
Physical Location & Seq
Reverse (-)
10079018 .. 10080728
1711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075900.1

Sequence Viewer

Length: 1449 bp
ATGGAAACCAAAACTGAGCAGCAGCTTCACATTTTCTTCCTTCCCTTTATGGCTCAAGGCCACACTTTACCCCTTATAGACATAGCCAAACTATTTGCTTCACGTGGTGTAAAATCCACCTTAATAACCACCCTCGTCAATGCACCACTTTTCTCCAAAGCAATCCAAACTAGCAAAAGTTTGGGTTTCGAAATCGAACTTCTTGTCATCAAATTCCCATCTACTGAAGTCGGGTTGCCTGAAGGAATTGAAAGAACTAACTTGCGTAAAAAGCAAGAGCAGGCGGATAATTACTTCAGAGCCACCAATCTGCTTGAGCAACAGGTTGAGCCAATTTTAGACCAACATCGTCCTCACTGTCTTGTTGCAGACTCTCTGTTTCCTTGGGCTACAGATGTTGCTGCCAAGTTTGGGATTCCAAGGATCATCTTTCATGGACCCGGTTTTTTCCCCTTGTGTGCTTCAACTAGTGTGATGCAGTACCAACCTCAGAGGGAGGTTTCATCTGATTCAGAATCTTTTGTTGTTCCTGGTCTCCCAGATGAGATCAAGATGACAAAAAACAAACTAGCTCCTTTTCTTACTTTAGATGGTGAGTCAGAACTCATCAAAGTGGTCACAGCATCCCAATTGGCTAATGAAACAAGCTATGGGATTATAGTTAACAGCTTCTATGAACTTGAACCAGCTTATGCAGATCATTATAGGAAGGTGTTTGGCAGGAAAGCATGGCATATAGGCCCAGCTTCTTTATGCGAGACAGAAAAAGATAAATTACAGAGGGGAAGGGAAGGCTCGGTTGATGAAGTACATGAGTGTTTGAACTGGCTTAATTCTAAGAAACCCAATTCTGTTGTTTATATATGTTTTGGAAGCCTGACCAATTTCAGTGATTGTCAGCTCTTAGAAATCGCCTTGGCTCTTGAAGCTTCTCGACAGCAATTCATTTGGGTTGTGAAGAAAGAAAATAATGATAAAGAAGAGTGGCTGCCTGAAGGATTTGAGCAGAGAGTGGAGGGAAATGGATTGATTATAAGAGGTTGGGCTCCCCAACTACTGATTCTTCAACATGAAGCAGTTGGGGCCTTTCTCACTCATTGTGGGTGGAACTCAACCCTTGAAGCAGTGTGTGCTGGGATCCCAATGATCACATGGCCAGTGTCCGCAGATCAGTTTTACAATGAGAAATTGGTGACTCAGATATTAGGGATTGGGGTTGCTGTTGGTGTTGAAAAATGGGAGGATGATAGTGTGAAGGGTGAAGCCAATATGAAGAAGGAGACCATAGAGAAGGCCGTGACTGAATTCATGGTCAGTCATGAAAAAGAGGAAATGAGAAGCAAAATTCTTGAACTCAGAGACCTCGCAAGGAGGGCAGTTGAAGAAGGTGGTTCATCGTTCTTGGATTTAACTGCTCTAATTGAAGAGTTGAAGTCTCTCAGGTTTTGA

Protein Analysis

482

Amino Acids

54.25

Weight (kDa)

5.3

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 274 - 408 8.9e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34160 AT1G34160
fragaria_vesca FvH4_2g12730
malus_domestica MD05G1037500.v1.1 MD10G1041300.v1.1
prunus_persica Prupe.8G045500_v2.0.a1 Prupe.8G045500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0273501
rosa_laevigata RLG00000013612
rosa_multiflora Rmu_co8087438.1_g000001 Rmu_sc0026438.1_g000001
rosa_roxburghii Rroxscaffold_7G00195290
rosa_rugosa Rorug06G0075900
rosa_samantha Rh6AG190600 Rh6BG194100 Rh6DG185200
rosa_wichuraiana Rw6G016680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1034
AciI CCGC 2 cut(s) 284, 1164
AclWI GGATC 3 cut(s) 431, 1132, 1145
AcoI YGGCCR 1 cut(s) 1154
AcsI RAATTY 3 cut(s) 212, 1304, 1344
AcuI CTGAAG 4 cut(s) 246, 261, 280, 1014
AcvI CACGTG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 2 cut(s) 482, 810
AfiI CCNNNNNNNGG 1 cut(s) 411
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 1 cut(s) 529
AjuI GAANNNNNNNTTGG 2 cut(s) 1044, 1076
AluBI AGCT 8 cut(s) 25, 572, 648, 669, 689, 746, 901, 929
AluI AGCT 8 cut(s) 25, 572, 648, 669, 689, 746, 901, 929
Alw26I GTCTC 5 cut(s) 539, 752, 1274, 1353, 1440
AlwI GGATC 3 cut(s) 431, 1132, 1145
AoxI GGCC 5 cut(s) 58, 739, 1083, 1154, 1293
ApeKI GCWGC 4 cut(s) 19, 22, 401, 988
ApoI RAATTY 3 cut(s) 212, 1304, 1344
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspS9I GGNCC 3 cut(s) 437, 740, 1083
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 605, 1204, 1271
AsuII TTCGAA 1 cut(s) 189
AvaII GGWCC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 1156
BamHI GGATCC 1 cut(s) 1137
BanII GRGCYC 1 cut(s) 1048
BbrPI CACGTG 1 cut(s) 104
BbvI GCAGC 4 cut(s) 31, 34, 388, 975
BccI CCATC 2 cut(s) 226, 584
BceAI ACGGC 1 cut(s) 1280
BciT130I CCWGG 1 cut(s) 531
BclI TGATCA 1 cut(s) 1146
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 5 cut(s) 539, 752, 1274, 1353, 1440
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 3 cut(s) 171, 468, 569
BfmI CTRYAG 1 cut(s) 390
BisI GCNGC 4 cut(s) 20, 23, 402, 989
BlsI GCNGC 4 cut(s) 21, 24, 403, 990
Bme1390I CCNGG 2 cut(s) 441, 531
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 437, 740, 1083
BmiI GGNNCC 4 cut(s) 439, 1047, 1084, 1139
BmrFI CCNGG 2 cut(s) 441, 531
BmsI GCATC 2 cut(s) 465, 632
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 2 cut(s) 39, 335
BpuMI CCSGG 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 104
BsaI GGTCTC 3 cut(s) 539, 1274, 1353
BsaJI CCNNGG 3 cut(s) 383, 419, 915
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 830, 1157
BseBI CCWGG 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 383, 419, 915
BseGI GGATG 2 cut(s) 623, 1249
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 4 cut(s) 6, 503, 1211, 1369
BseNI ACTGG 2 cut(s) 830, 1157
BseXI GCAGC 4 cut(s) 31, 34, 388, 975
BseYI CCCAGC 2 cut(s) 742, 1133
BshFI GGCC 5 cut(s) 60, 741, 1085, 1156, 1295
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 411
BsmAI GTCTC 5 cut(s) 539, 752, 1274, 1353, 1440
BsnI GGCC 5 cut(s) 60, 741, 1085, 1156, 1295
Bso31I GGTCTC 3 cut(s) 539, 1274, 1353
Bsp119I TTCGAA 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp143I GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
BspACI CCGC 2 cut(s) 284, 1164
BspANI GGCC 5 cut(s) 60, 741, 1085, 1156, 1295
BspCNI CTCAG 4 cut(s) 7, 502, 1210, 1368
BspHI TCATGA 1 cut(s) 1318
BspLI GGNNCC 4 cut(s) 439, 1047, 1084, 1139
BspPI GGATC 3 cut(s) 431, 1132, 1145
BspT104I TTCGAA 1 cut(s) 189
BspTNI GGTCTC 3 cut(s) 539, 1274, 1353
BsrI ACTGG 2 cut(s) 830, 1157
BssECI CCNNGG 3 cut(s) 383, 419, 915
BssMI GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
BssT1I CCWWGG 3 cut(s) 383, 419, 915
Bst2UI CCWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 975, 1419
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstBAI YACGTR 1 cut(s) 104
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 7 cut(s) 15, 489, 837, 904, 1197, 1355, 1439
BstF5I GGATG 2 cut(s) 623, 1249
BstKTI GATC 6 cut(s) 426, 549, 700, 1140, 1149, 1171
BstMAI GTCTC 5 cut(s) 539, 752, 1274, 1353, 1440
BstMBI GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
BstMWI GCNNNNNNNGC 5 cut(s) 271, 926, 1082, 1130, 1373
BstNI CCWGG 1 cut(s) 531
BstSCI CCNGG 2 cut(s) 439, 529
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 4 cut(s) 31, 34, 388, 975
BstX2I RGATCY 1 cut(s) 1137
BstYI RGATCY 1 cut(s) 1137
BsuRI GGCC 5 cut(s) 60, 741, 1085, 1156, 1295
BtsCI GGATG 2 cut(s) 623, 1249
BtsI GCAGTG 1 cut(s) 1131
BtsIMutI CAGTG 4 cut(s) 355, 895, 1131, 1164
Cac8I GCNNGC 1 cut(s) 282
CciI TCATGA 1 cut(s) 1318
Cfr13I GGNCC 3 cut(s) 437, 740, 1083
Csp6I GTAC 2 cut(s) 481, 809
CviAII CATG 7 cut(s) 434, 729, 812, 1070, 1152, 1309, 1319
CviQI GTAC 2 cut(s) 481, 809
DdeI CTNAG 7 cut(s) 15, 489, 837, 904, 1197, 1355, 1439
DpnI GATC 6 cut(s) 425, 548, 699, 1139, 1148, 1170
DpnII GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
DraIII CACNNNGTG 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 1154
Eam1104I CTCTTC 2 cut(s) 975, 1419
EarI CTCTTC 2 cut(s) 975, 1419
EciI GGCGGA 1 cut(s) 299
Eco130I CCWWGG 3 cut(s) 383, 419, 915
Eco24I GRGCYC 1 cut(s) 1048
Eco31I GGTCTC 3 cut(s) 539, 1274, 1353
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 4 cut(s) 246, 261, 280, 1014
Eco72I CACGTG 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 1083
EcoRI GAATTC 1 cut(s) 1304
EcoRII CCWGG 1 cut(s) 529
EcoT14I CCWWGG 3 cut(s) 383, 419, 915
EcoT38I GRGCYC 1 cut(s) 1048
ErhI CCWWGG 3 cut(s) 383, 419, 915
FaeI CATG 7 cut(s) 437, 732, 815, 1073, 1155, 1312, 1322
FatI CATG 7 cut(s) 433, 728, 811, 1069, 1151, 1308, 1318
FbaI TGATCA 1 cut(s) 1146
Fnu4HI GCNGC 4 cut(s) 20, 23, 402, 989
FokI GGATG 2 cut(s) 610, 1256
FriOI GRGCYC 1 cut(s) 1048
Fsp4HI GCNGC 4 cut(s) 20, 23, 402, 989
FspBI CTAG 3 cut(s) 171, 468, 569
GluI GCNGC 4 cut(s) 20, 23, 402, 989
GsaI CCCAGC 2 cut(s) 746, 1137
HaeIII GGCC 5 cut(s) 60, 741, 1085, 1156, 1295
HapII CCGG 1 cut(s) 441
Hin1II CATG 7 cut(s) 437, 732, 815, 1073, 1155, 1312, 1322
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 927
HinfI GANTC 7 cut(s) 371, 415, 509, 515, 596, 1060, 1195
HpaI GTTAAC 1 cut(s) 664
HpaII CCGG 1 cut(s) 441
HphI GGTGA 3 cut(s) 605, 1204, 1271
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 7 cut(s) 299, 492, 508, 514, 601, 1200, 1358
Hpy188III TCNNGA 5 cut(s) 550, 923, 933, 1319, 1349
Hpy8I GTNNAC 1 cut(s) 664
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 4 cut(s) 143, 368, 478, 695
HpyF10VI GCNNNNNNNGC 5 cut(s) 271, 926, 1082, 1130, 1373
HpyF3I CTNAG 7 cut(s) 15, 489, 837, 904, 1197, 1355, 1439
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 7 cut(s) 437, 732, 815, 1073, 1155, 1312, 1322
Ksp22I TGATCA 1 cut(s) 1146
KspAI GTTAAC 1 cut(s) 664
Kzo9I GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
LmnI GCTCC 2 cut(s) 577, 1051
Lsp1109I GCAGC 4 cut(s) 31, 34, 388, 975
LweI GCATC 2 cut(s) 465, 632
MaeI CTAG 3 cut(s) 171, 468, 569
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 616, 1192, 1297
MalI GATC 6 cut(s) 425, 548, 699, 1139, 1148, 1170
MboI GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
MboII GAAGA 7 cut(s) 28, 970, 992, 1055, 1285, 1394, 1436
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 1 cut(s) 1137
MhlI GDGCHC 1 cut(s) 1048
MlsI TGGCCA 1 cut(s) 1156
MluNI TGGCCA 1 cut(s) 1156
MlyI GAGTC 3 cut(s) 365, 605, 1189
Mox20I TGGCCA 1 cut(s) 1156
MscI TGGCCA 1 cut(s) 1156
MseI TTAA 4 cut(s) 122, 663, 831, 1409
MslI CAYNNNNRTG 1 cut(s) 611
Msp20I TGGCCA 1 cut(s) 1156
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 441, 531
MunI CAATTG 1 cut(s) 629
MvaI CCWGG 1 cut(s) 531
MwoI GCNNNNNNNGC 5 cut(s) 271, 926, 1082, 1130, 1373
NciI CCSGG 1 cut(s) 441
NdeII GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
NlaIII CATG 7 cut(s) 437, 732, 815, 1073, 1155, 1312, 1322
NlaIV GGNNCC 4 cut(s) 439, 1047, 1084, 1139
NmuCI GTSAC 3 cut(s) 616, 1192, 1297
NspV TTCGAA 1 cut(s) 189
PagI TCATGA 1 cut(s) 1318
PfeI GAWTC 4 cut(s) 415, 509, 515, 1060
PkrI GCNGC 4 cut(s) 21, 24, 403, 990
PleI GAGTC 3 cut(s) 365, 604, 1189
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
PpsI GAGTC 3 cut(s) 365, 604, 1189
Ppu21I YACGTR 1 cut(s) 104
PsiI TTATAA 1 cut(s) 1034
Psp6I CCWGG 1 cut(s) 529
PspCI CACGTG 1 cut(s) 104
PspFI CCCAGC 2 cut(s) 742, 1133
PspGI CCWGG 1 cut(s) 529
PspN4I GGNNCC 4 cut(s) 439, 1047, 1084, 1139
PspPI GGNCC 3 cut(s) 437, 740, 1083
PsuI RGATCY 1 cut(s) 1137
RsaI GTAC 2 cut(s) 482, 810
RsaNI GTAC 2 cut(s) 481, 809
RseI CAYNNNNRTG 1 cut(s) 611
SaqAI TTAA 4 cut(s) 122, 663, 831, 1409
SatI GCNGC 4 cut(s) 20, 23, 402, 989
Sau3AI GATC 6 cut(s) 423, 546, 697, 1137, 1146, 1168
Sau96I GGNCC 3 cut(s) 437, 740, 1083
SchI GAGTC 3 cut(s) 365, 605, 1189
ScrFI CCNGG 2 cut(s) 441, 531
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 2 cut(s) 465, 632
SfcI CTRYAG 1 cut(s) 390
SfuI TTCGAA 1 cut(s) 189
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 611
SmlI CTYRAG 2 cut(s) 54, 314
SmoI CTYRAG 2 cut(s) 54, 314
SpeI ACTAGT 1 cut(s) 467
SsiI CCGC 2 cut(s) 284, 1164
SspMI CTAG 3 cut(s) 171, 468, 569
StyD4I CCNGG 2 cut(s) 439, 529
StyI CCWWGG 3 cut(s) 383, 419, 915
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 1 cut(s) 106
TaqI TCGA 3 cut(s) 189, 195, 934
TatI WGTACW 1 cut(s) 808
TfiI GAWTC 4 cut(s) 415, 509, 515, 1060
Tru1I TTAA 4 cut(s) 122, 663, 831, 1409
Tru9I TTAA 4 cut(s) 122, 663, 831, 1409
TscAI CASTG 4 cut(s) 362, 895, 1131, 1164
TseFI GTSAC 3 cut(s) 616, 1192, 1297
TseI GCWGC 4 cut(s) 19, 22, 401, 988
Tsp45I GTSAC 3 cut(s) 616, 1192, 1297
TspRI CASTG 4 cut(s) 362, 895, 1131, 1164
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 212, 1304, 1344
XcmI CCANNNNNNNNNTGG 1 cut(s) 1149
XspI CTAG 3 cut(s) 171, 468, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.