Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8087438.1

Orthogroup ID

OG0014380

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 491

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8087438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgactggggaggaggggttaaagcccaatgaagtcactgtcctcggtgcgctctcggcgtgttctcaattgggtgcattgagaggtggagagagaatacatacctatatagtgaatgccaagcttgatacgcatgtcattgtttgcaatgcggttattgatatgtatgcgaaatgcgggttcgtggatagagcgtatgaggtgtttgagaatatgagatgtgggaagaatttgataacttggaatacgatgatgatggcatttgctatgcatggcgatggttgtaaagcgcttgagctttttgagaagatgggtcaaaatggagtgtgccctgatgcagtgtcgtatcttgctgcgttgtgtgcgtgcaatcatgcaggacttgtggaagatggggttaagttatttaattcaatggcggggagtgggatggtaccgaatgttaagcattatgggactgtggttgatttgttgggacgagctgggcgac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 ThiC_Rad_SAM

Protein Analysis

163

Amino Acids

17.48

Weight (kDa)

6.18

Isoelectric Point (pI)

21.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34160 AT1G34160
fragaria_vesca	FvH4_2g12730
malus_domestica	MD05G1037500.v1.1 MD10G1041300.v1.1
prunus_persica	Prupe.8G045500_v2.0.a1 Prupe.8G045500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273501
rosa_laevigata	RLG00000013612
rosa_multiflora	Rmu_co8087438.1_g000001 Rmu_sc0026438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195290
rosa_rugosa	Rorug06G0075900
rosa_samantha	Rh6AG190600 Rh6BG194100 Rh6DG185200
rosa_wichuraiana	Rw6G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	433
AciI	CCGC	3 cut(s)	152, 177, 419
AcsI	RAATTY	1 cut(s)	229
AfaI	GTAC	1 cut(s)	435
AfeI	AGCGCT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	414
AluBI	AGCT	3 cut(s)	124, 298, 482
AluI	AGCT	3 cut(s)	124, 298, 482
Aor51HI	AGCGCT	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	229
Asp718I	GGTACC	1 cut(s)	433
AspLEI	GCGC	2 cut(s)	52, 292
BaeGI	GKGCMC	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BanI	GGYRCC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	5 cut(s)	250, 272, 304, 386, 424
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	15
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	154
BseNI	ACTGG	1 cut(s)	10
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	482
BshNI	GGYRCC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	332
BspACI	CCGC	3 cut(s)	152, 177, 419
BspLI	GGNNCC	1 cut(s)	435
BspT107I	GGYRCC	1 cut(s)	433
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	40, 460
BstC8I	GCNNGC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	2 cut(s)	52, 292
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 130, 362
BstNSI	RCATGY	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	2 cut(s)	36, 345
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	2 cut(s)	52, 292
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	3 cut(s)	134, 272, 374
CviJI	RGCY	4 cut(s)	25, 124, 298, 482
CviKI_1	RGCY	4 cut(s)	25, 124, 298, 482
CviQI	GTAC	1 cut(s)	434
Eco47III	AGCGCT	1 cut(s)	291
EcoT22I	ATGCAT	1 cut(s)	273
FaeI	CATG	3 cut(s)	137, 275, 377
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	3 cut(s)	133, 271, 373
FauI	CCCGC	2 cut(s)	170, 412
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	354
GlaI	GCGC	2 cut(s)	51, 291
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	293
HhaI	GCGC	2 cut(s)	52, 292
Hin1II	CATG	3 cut(s)	137, 275, 377
Hin6I	GCGC	2 cut(s)	50, 290
HinP1I	GCGC	2 cut(s)	50, 290
HindIII	AAGCTT	1 cut(s)	122
HpyCH4III	ACNGT	2 cut(s)	40, 460
HpyCH4V	TGCA	6 cut(s)	77, 147, 271, 338, 369, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 130, 362
Hsp92II	CATG	3 cut(s)	137, 275, 377
HspAI	GCGC	2 cut(s)	50, 290
KpnI	GGTACC	1 cut(s)	437
LpnPI	CCDG	3 cut(s)	345, 363, 468
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	238, 319, 401
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	1 cut(s)	332
MluCI	AATT	3 cut(s)	68, 229, 409
MnlI	CCTC	5 cut(s)	4, 7, 53, 77, 193
Mph1103I	ATGCAT	1 cut(s)	273
MseI	TTAA	4 cut(s)	20, 399, 408, 444
MslI	CAYNNNNRTG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	121
MwoI	GCNNNNNNNGC	3 cut(s)	56, 130, 362
NlaIII	CATG	3 cut(s)	137, 275, 377
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	273
NspI	RCATGY	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	482
PspN4I	GGNNCC	1 cut(s)	435
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	4 cut(s)	20, 399, 408, 444
SatI	GCNGC	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	332
SetI	ASST	6 cut(s)	88, 107, 126, 204, 300, 484
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	68, 229, 409
SsiI	CCGC	3 cut(s)	152, 177, 419
TaaI	ACNGT	2 cut(s)	40, 460
TasI	AATT	3 cut(s)	68, 229, 409
Tru1I	TTAA	4 cut(s)	20, 399, 408, 444
Tru9I	TTAA	4 cut(s)	20, 399, 408, 444
TscAI	CASTG	2 cut(s)	43, 345
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	1 cut(s)	45
TspRI	CASTG	2 cut(s)	43, 345
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.