Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0014380

Physical Location & Seq

Genomic Coordinates Reverse (-)

32997790 .. 32998941

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG185200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTGAGGAGGAGGGGTTAAAGCCCAATGAAGTCACTGTCCTCGGCGCGCTCTCGGCGTGCTCTCAATTGGGTGCATTGAGAGGTGGAGAGAGAATACATACCTATATAGTGAATGCCAAGCTTGATACGCATGTCATTGTTTGCAATGCGGTTATTGATATGTATGCGAAATGCGGGTTCGTGGATAGAGCATATGAGGCGTTTGAGAATATGAGATGTGGGAAGAATTTGATAACTTGGAATACGATGATAATGGCATTTGCTATGCATGGTGATGGTTGCAAAGCGCTTGAGCTTTTTGAGAAGATGGGTAAAAATGGAGTGTGCCCTGATGCAGTGTCGTATCTTGCTGCGTTGTGTGCGTGCAATCATGCAGGACTGGTGGAAGATGGGGTTAAGTTATTTAATTCAATGGCGGGGAGTGGGATGGTACCGAATGTTAAGCATTATGGGACTGTGGTTGATTTGTTGGGACGAGCTGGGCGACTTCAAGAGGCTTATGAGATTGTGAAATCTATGCCGATGTTTCCTGATGTAGTACTGTGGCAGACTTTGCTTGGTGCCAGCAAGACCTATGGGAATGTGGAAATGGCAGAGATGGCGTCACGGAACTTGGTTGAGTTGGGGTCTGAGGGTTGTGGTGATTTCGTGTTGTTATCAAATGTTTATGCGGCTCATAATAGATGGGATGATGTAGGCAGGGTGCGGGAAGCCATGAAGAGAAGGGATGTGAAGAAGATACCTGGTTTCGGTTACATAGAAGTTGAAGGTGTGATACACAAATTTGTGAATGGTGATCAAAACCATGTTAATAGTCATGAGATTTATTCAAAGCTAGATGAGATCAAATGCAGGATTAAAGCCTATGGATATGTTGCAAAGACAAATCATGTGTTGCATGATATTGGGGAGGAGGACAAAGAAAATGCATTGAGCTACCATTGTGAGAAGTTGGCTGTGGCTTTTGGTTTGATCAGCACTGATGAGGGGACACCAATTCAGGTGATTAAGAACCTAAGAATATGTGATGATTGTCATGTCGTGATGAAACTTATTTCAGAAATATATAATAGGGAAATTATTGTAAGGGATCGAGCCCGGTTTCACAGATTTCAAGATGGACTTTGTTCTTGCAGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 ThiC_Rad_SAM

Protein Analysis

383

Amino Acids

42.7

Weight (kDa)

6.07

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	77 - 123	4e-10	PPR repeat family
PPR	PF01535	79 - 109	1.6e-06	PPR repeat
E_motif	PF20431	193 - 255	4.3e-19	E motif
DYW_deaminase	PF14432	291 - 383	4.2e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34160 AT1G34160
fragaria_vesca	FvH4_2g12730
malus_domestica	MD05G1037500.v1.1 MD10G1041300.v1.1
prunus_persica	Prupe.8G045500_v2.0.a1 Prupe.8G045500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273501
rosa_laevigata	RLG00000013612
rosa_multiflora	Rmu_co8087438.1_g000001 Rmu_sc0026438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195290
rosa_rugosa	Rorug06G0075900
rosa_samantha	Rh6AG190600 Rh6BG194100 Rh6DG185200
rosa_wichuraiana	Rw6G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	433
AccB1I	GGYRCC	2 cut(s)	433, 563
AccII	CGCG	1 cut(s)	50
AciI	CCGC	5 cut(s)	152, 177, 419, 674, 709
AclWI	GGATC	1 cut(s)	1101
AcsI	RAATTY	2 cut(s)	229, 785
AcyI	GRCGYC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	435, 543
AfeI	AGCGCT	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	752
AgsI	TTSAA	5 cut(s)	414, 494, 770, 834, 1118
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	5 cut(s)	124, 298, 482, 838, 939
AluI	AGCT	5 cut(s)	124, 298, 482, 838, 939
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	1 cut(s)	1101
Aor51HI	AGCGCT	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	2 cut(s)	229, 785
Asp718I	GGTACC	1 cut(s)	433
AspLEI	GCGC	3 cut(s)	50, 52, 292
AsuC2I	CCSGG	1 cut(s)	1102
AsuHPI	GGTGA	4 cut(s)	287, 656, 809, 1018
BaeGI	GKGCMC	1 cut(s)	332
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BanI	GGYRCC	2 cut(s)	433, 563
BanII	GRGCYC	1 cut(s)	1102
BarI	GAAGNNNNNNTAC	2 cut(s)	762, 794
Bbv12I	GWGCWC	1 cut(s)	65
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	7 cut(s)	272, 304, 386, 424, 595, 681, 1115
BciT130I	CCWGG	1 cut(s)	747
BclI	TGATCA	2 cut(s)	799, 975
BcnI	CCSGG	1 cut(s)	1102
BfaI	CTAG	1 cut(s)	839
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	2 cut(s)	354, 675
BlsI	GCNGC	2 cut(s)	355, 676
BmcAI	AGTACT	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	747, 1102
BmiI	GGNNCC	2 cut(s)	435, 565
BmrFI	CCNGG	2 cut(s)	747, 1102
BmsI	GCATC	1 cut(s)	325
Bpu10I	CCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	1102
BsaHI	GRCGYC	1 cut(s)	605
BsaJI	CCNNGG	1 cut(s)	43
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	43
BseGI	GGATG	3 cut(s)	435, 697, 736
BseLI	CCNNNNNNNGG	1 cut(s)	752
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	387
BsePI	GCGCGC	1 cut(s)	48
BseRI	GAGGAG	3 cut(s)	23, 26, 929
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	340
BseYI	CCCAGC	1 cut(s)	482
Bsh1236I	CGCG	1 cut(s)	50
BshNI	GGYRCC	2 cut(s)	433, 563
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	1102
BslFI	GGGAC	3 cut(s)	469, 489, 1006
BslI	CCNNNNNNNGG	1 cut(s)	752
BsmFI	GGGAC	3 cut(s)	469, 489, 1006
BsmI	GAATGC	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	65, 332, 1102
Bsp143I	GATC	4 cut(s)	799, 846, 975, 1093
BspACI	CCGC	5 cut(s)	152, 177, 419, 674, 709
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	50
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	2 cut(s)	435, 565
BspPI	GGATC	1 cut(s)	1101
BspT107I	GGYRCC	2 cut(s)	433, 563
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	43
BssHII	GCGCGC	1 cut(s)	48
BssMI	GATC	4 cut(s)	799, 846, 975, 1093
BssNI	GRCGYC	1 cut(s)	605
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	3 cut(s)	40, 460, 546
Bst6I	CTCTTC	1 cut(s)	716
BstACI	GRCGYC	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	556
BstC8I	GCNNGC	4 cut(s)	50, 61, 367, 568
BstDEI	CTNAG	3 cut(s)	6, 633, 1019
BstF5I	GGATG	3 cut(s)	435, 697, 736
BstFNI	CGCG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	3 cut(s)	50, 52, 292
BstKTI	GATC	4 cut(s)	802, 849, 978, 1096
BstMBI	GATC	4 cut(s)	799, 846, 975, 1093
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 130, 200, 362, 556, 602
BstNI	CCWGG	1 cut(s)	747
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	2 cut(s)	745, 1100
BstSLI	GKGCMC	1 cut(s)	332
BstUI	CGCG	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	435, 697, 736
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	36, 345, 981
Cac8I	GCNNGC	4 cut(s)	50, 61, 367, 568
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	3 cut(s)	50, 52, 292
CseI	GACGC	1 cut(s)	594
CsiI	ACCWGGT	1 cut(s)	745
Csp6I	GTAC	2 cut(s)	434, 542
CviAII	CATG	9 cut(s)	134, 272, 374, 718, 809, 821, 893, 902, 1040
CviQI	GTAC	2 cut(s)	434, 542
DdeI	CTNAG	3 cut(s)	6, 633, 1019
DpnI	GATC	4 cut(s)	801, 848, 977, 1095
DpnII	GATC	4 cut(s)	799, 846, 975, 1093
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	1102
Eco47III	AGCGCT	1 cut(s)	291
EcoRII	CCWGG	1 cut(s)	745
EcoT22I	ATGCAT	2 cut(s)	273, 934
EcoT38I	GRGCYC	1 cut(s)	1102
FaeI	CATG	9 cut(s)	137, 275, 377, 721, 812, 824, 896, 905, 1043
FalI	AAGNNNNNCTT	2 cut(s)	1110, 1142
FaqI	GGGAC	3 cut(s)	469, 489, 1006
FatI	CATG	9 cut(s)	133, 271, 373, 717, 808, 820, 892, 901, 1039
FauI	CCCGC	3 cut(s)	170, 412, 702
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	2 cut(s)	799, 975
Fnu4HI	GCNGC	2 cut(s)	354, 675
FokI	GGATG	3 cut(s)	442, 704, 743
FriOI	GRGCYC	1 cut(s)	1102
Fsp4HI	GCNGC	2 cut(s)	354, 675
FspBI	CTAG	1 cut(s)	839
GlaI	GCGC	3 cut(s)	49, 51, 291
GluI	GCNGC	2 cut(s)	354, 675
GsaI	CCCAGC	1 cut(s)	486
HaeII	RGCGCY	1 cut(s)	293
HapII	CCGG	1 cut(s)	1102
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	3 cut(s)	50, 52, 292
Hin1I	GRCGYC	1 cut(s)	605
Hin1II	CATG	9 cut(s)	137, 275, 377, 721, 812, 824, 896, 905, 1043
Hin6I	GCGC	3 cut(s)	48, 50, 290
HinP1I	GCGC	3 cut(s)	48, 50, 290
HindIII	AAGCTT	1 cut(s)	122
HpaII	CCGG	1 cut(s)	1102
HphI	GGTGA	4 cut(s)	287, 656, 809, 1018
Hpy188I	TCNGA	2 cut(s)	634, 1063
Hpy188III	TCNNGA	5 cut(s)	494, 533, 821, 1045, 1118
HpyAV	CCTTC	2 cut(s)	720, 764
HpyCH4III	ACNGT	3 cut(s)	40, 460, 546
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 130, 200, 362, 556, 602
HpyF3I	CTNAG	3 cut(s)	6, 633, 1019
Hsp92I	GRCGYC	1 cut(s)	605
Hsp92II	CATG	9 cut(s)	137, 275, 377, 721, 812, 824, 896, 905, 1043
HspAI	GCGC	3 cut(s)	48, 50, 290
KpnI	GGTACC	1 cut(s)	437
Ksp22I	TGATCA	2 cut(s)	799, 975
Kzo9I	GATC	4 cut(s)	799, 846, 975, 1093
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	325
MabI	ACCWGGT	1 cut(s)	745
MaeI	CTAG	1 cut(s)	839
MaeIII	GTNAC	3 cut(s)	34, 606, 755
MalI	GATC	4 cut(s)	801, 848, 977, 1095
MboI	GATC	4 cut(s)	799, 846, 975, 1093
MboII	GAAGA	6 cut(s)	238, 319, 401, 733, 748, 751
MfeI	CAATTG	1 cut(s)	68
MhlI	GDGCHC	3 cut(s)	65, 332, 1102
MluCI	AATT	6 cut(s)	68, 229, 409, 785, 999, 1080
Mph1103I	ATGCAT	2 cut(s)	273, 934
MseI	TTAA	7 cut(s)	20, 399, 408, 444, 813, 861, 1011
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	1 cut(s)	1102
MspR9I	CCNGG	2 cut(s)	747, 1102
MunI	CAATTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	747
MvnI	CGCG	1 cut(s)	50
MwoI	GCNNNNNNNGC	6 cut(s)	56, 130, 200, 362, 556, 602
NciI	CCSGG	1 cut(s)	1102
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	4 cut(s)	799, 846, 975, 1093
NlaIII	CATG	9 cut(s)	137, 275, 377, 721, 812, 824, 896, 905, 1043
NlaIV	GGNNCC	2 cut(s)	435, 565
NmeAIII	GCCGAG	2 cut(s)	24, 35
NmuCI	GTSAC	2 cut(s)	34, 606
NsiI	ATGCAT	2 cut(s)	273, 934
NspI	RCATGY	1 cut(s)	137
PagI	TCATGA	1 cut(s)	820
PauI	GCGCGC	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	484
PctI	GAATGC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	355, 676
Psp6I	CCWGG	1 cut(s)	745
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	745
PspN4I	GGNNCC	2 cut(s)	435, 565
PteI	GCGCGC	1 cut(s)	48
RsaI	GTAC	2 cut(s)	435, 543
RsaNI	GTAC	2 cut(s)	434, 542
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	7 cut(s)	20, 399, 408, 444, 813, 861, 1011
SatI	GCNGC	2 cut(s)	354, 675
Sau3AI	GATC	4 cut(s)	799, 846, 975, 1093
ScaI	AGTACT	1 cut(s)	543
ScrFI	CCNGG	2 cut(s)	747, 1102
SduI	GDGCHC	3 cut(s)	65, 332, 1102
SexAI	ACCWGGT	1 cut(s)	745
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	6 cut(s)	68, 229, 409, 785, 999, 1080
SsiI	CCGC	5 cut(s)	152, 177, 419, 674, 709
SspMI	CTAG	1 cut(s)	839
StyD4I	CCNGG	2 cut(s)	745, 1100
TaaI	ACNGT	3 cut(s)	40, 460, 546
TaqI	TCGA	1 cut(s)	1096
TasI	AATT	6 cut(s)	68, 229, 409, 785, 999, 1080
TatI	WGTACW	1 cut(s)	541
TauI	GCSGC	1 cut(s)	677
Tru1I	TTAA	7 cut(s)	20, 399, 408, 444, 813, 861, 1011
Tru9I	TTAA	7 cut(s)	20, 399, 408, 444, 813, 861, 1011
TscAI	CASTG	3 cut(s)	43, 345, 988
TseFI	GTSAC	2 cut(s)	34, 606
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	2 cut(s)	34, 606
TspDTI	ATGAA	3 cut(s)	45, 734, 1064
TspGWI	ACGGA	1 cut(s)	625
TspRI	CASTG	3 cut(s)	43, 345, 988
XapI	RAATTY	2 cut(s)	229, 785
XceI	RCATGY	1 cut(s)	137
XspI	CTAG	1 cut(s)	839
ZrmI	AGTACT	1 cut(s)	543
Zsp2I	ATGCAT	2 cut(s)	273, 934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.