Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026438.1

Orthogroup ID

OG0014380

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2254

Gene Structure 2253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 938 bp

atggcaagaaggttaagacccaaagcgacaccaaagcagttactcgagatcatagggttaggtgaatattctagtgcaattaatgcaagcagagggcaactcgaggtaggaaggagaagattcgaaaatctagcaaagcatgaaagaggaagggaattccatggaatcttcgtacttgtttgtggtcaaggtaatagggaagagctcttgcacatgattttgcggttttggatcatggtgttgaatggggtaagtttcttcttgagattggctgcgaagaggttggttgggaacacggtggaagagcatgacgtggttcttttcagtgttggcgatacaaatgcctccggacctagatacaaatgccattgtgatggaatggccaacttggagttgttgttacagaaatgcgactctctcacccacatcaaacagctccaagcccacctcttaaccattggacgattccaactctacccctccatcaccatcaagctcctcgagctctgtgctcttccccccatcgccaatctcccttacgccacaaccctcttccaccaactccaaagcccttccaccaggcactggaacgccgtcgttcgaggcctcgcccagagcctccaacccacccaagccgtcacatggtacgccaccatgtcgcgctcttcccaaaaggtcgacgcgctcacttgctccttcgctctcaaagcgtgtgcacgcgccttggcgctgtccgaggccatgcagattcactctcagcttctgcgtttcgggtttggacgcgatgtgttgctgcgaactactttgcttgacgtgtacgcgaaagttgggaacctgggttttgcgcagaaggtgttcgacgaaatgcctgagagggatatagcttgttggaatgctttggttgctgggttggctcaggggagtcaacccagtgaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 ThiC_Rad_SAM

Protein Analysis

313

Amino Acids

34.91

Weight (kDa)

9.36

Isoelectric Point (pI)

51.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34160 AT1G34160
fragaria_vesca	FvH4_2g12730
malus_domestica	MD05G1037500.v1.1 MD10G1041300.v1.1
prunus_persica	Prupe.8G045500_v2.0.a1 Prupe.8G045500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0273501
rosa_laevigata	RLG00000013612
rosa_multiflora	Rmu_co8087438.1_g000001 Rmu_sc0026438.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195290
rosa_rugosa	Rorug06G0075900
rosa_samantha	Rh6AG190600 Rh6BG194100 Rh6DG185200
rosa_wichuraiana	Rw6G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	846
AccB7I	CCANNNNNTGG	1 cut(s)	585
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	5 cut(s)	661, 683, 720, 783, 821
AccIII	TCCGGA	1 cut(s)	347
AciI	CCGC	1 cut(s)	223
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	155
AfaI	GTAC	3 cut(s)	174, 647, 818
AfiI	CCNNNNNNNGG	2 cut(s)	585, 642
AflIII	ACRYGT	1 cut(s)	813
AgsI	TTSAA	1 cut(s)	244
AjiI	CACGTC	2 cut(s)	313, 814
AjnI	CCWGG	2 cut(s)	578, 834
AluBI	AGCT	6 cut(s)	205, 436, 496, 505, 760, 884
AluI	AGCT	6 cut(s)	205, 436, 496, 505, 760, 884
Alw21I	GWGCWC	4 cut(s)	207, 507, 514, 718
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	2 cut(s)	585, 763
Ama87I	CYCGRG	3 cut(s)	44, 101, 500
Aor13HI	TCCGGA	1 cut(s)	347
AoxI	GGCC	3 cut(s)	381, 604, 738
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	2 cut(s)	272, 793
ApoI	RAATTY	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	854
AspLEI	GCGC	5 cut(s)	663, 685, 722, 730, 847
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	74, 412, 478
AsuII	TTCGAA	1 cut(s)	123
AvaI	CYCGRG	3 cut(s)	44, 101, 500
AvaII	GGWCC	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	2 cut(s)	207, 507
Bbv12I	GWGCWC	4 cut(s)	207, 507, 514, 718
BbvI	GCAGC	2 cut(s)	259, 780
BccI	CCATC	4 cut(s)	368, 491, 497, 530
BceAI	ACGGC	2 cut(s)	578, 620
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 491, 525
BciT130I	CCWGG	2 cut(s)	580, 836
BfaI	CTAG	3 cut(s)	72, 131, 354
BfoI	RGCGCY	1 cut(s)	731
BisI	GCNGC	2 cut(s)	273, 794
BlsI	GCNGC	2 cut(s)	274, 795
Bme1390I	CCNGG	2 cut(s)	580, 836
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	3 cut(s)	44, 101, 500
BmgBI	CACGTC	2 cut(s)	313, 814
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	833
BmrFI	CCNGG	2 cut(s)	580, 836
BmrI	ACTGGG	1 cut(s)	924
BmuI	ACTGGG	1 cut(s)	924
BplI	GAGNNNNNCTC	2 cut(s)	84, 116
Bpu10I	CCTNAGC	1 cut(s)	915
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	4 cut(s)	160, 723, 735, 835
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 642
Bse1I	ACTGG	2 cut(s)	590, 930
BseAI	TCCGGA	1 cut(s)	347
BseBI	CCWGG	2 cut(s)	580, 836
BseDI	CCNNGG	4 cut(s)	160, 723, 735, 835
BseLI	CCNNNNNNNGG	2 cut(s)	585, 642
BseMII	CTCAG	3 cut(s)	770, 861, 929
BseNI	ACTGG	2 cut(s)	590, 930
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	718
BseXI	GCAGC	2 cut(s)	259, 780
BseYI	CCCAGC	1 cut(s)	905
Bsh1236I	CGCG	5 cut(s)	661, 683, 720, 783, 821
BshFI	GGCC	3 cut(s)	383, 606, 740
BsiHKAI	GWGCWC	4 cut(s)	207, 507, 514, 718
BsiHKCI	CYCGRG	3 cut(s)	44, 101, 500
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	2 cut(s)	585, 642
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	3 cut(s)	383, 606, 740
BsoBI	CYCGRG	3 cut(s)	44, 101, 500
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	4 cut(s)	207, 507, 514, 718
Bsp13I	TCCGGA	1 cut(s)	347
Bsp143I	GATC	2 cut(s)	48, 231
Bsp19I	CCATGG	1 cut(s)	160
BspACI	CCGC	1 cut(s)	223
BspANI	GGCC	3 cut(s)	383, 606, 740
BspCNI	CTCAG	3 cut(s)	769, 862, 928
BspEI	TCCGGA	1 cut(s)	347
BspFNI	CGCG	5 cut(s)	661, 683, 720, 783, 821
BspLI	GGNNCC	1 cut(s)	833
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	4 cut(s)	195, 297, 519, 670
BspT104I	TTCGAA	1 cut(s)	123
BsrI	ACTGG	2 cut(s)	590, 930
BssECI	CCNNGG	4 cut(s)	160, 723, 735, 835
BssMI	GATC	2 cut(s)	48, 231
BssT1I	CCWWGG	2 cut(s)	160, 723
Bst2UI	CCWGG	2 cut(s)	580, 836
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	6 cut(s)	195, 272, 297, 519, 557, 670
BstAPI	GCANNNNNTGC	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	88, 718
BstDEI	CTNAG	3 cut(s)	756, 870, 915
BstDSI	CCRYGG	1 cut(s)	160
BstFNI	CGCG	5 cut(s)	661, 683, 720, 783, 821
BstH2I	RGCGCY	1 cut(s)	731
BstHHI	GCGC	5 cut(s)	663, 685, 722, 730, 847
BstKTI	GATC	2 cut(s)	51, 234
BstMBI	GATC	2 cut(s)	48, 231
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 502, 707, 902, 911
BstNI	CCWGG	2 cut(s)	580, 836
BstSCI	CCNGG	2 cut(s)	578, 834
BstSLI	GKGCMC	1 cut(s)	718
BstUI	CGCG	5 cut(s)	661, 683, 720, 783, 821
BstV1I	GCAGC	2 cut(s)	259, 780
BstXI	CCANNNNNNTGG	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	383, 606, 740
BtgI	CCRYGG	1 cut(s)	160
BtgZI	GCGATG	2 cut(s)	508, 798
BtrI	CACGTC	2 cut(s)	313, 814
BtsIMutI	CAGTG	3 cut(s)	331, 583, 937
Cac8I	GCNNGC	2 cut(s)	88, 718
CaiI	CAGNNNCTG	2 cut(s)	585, 763
CfoI	GCGC	5 cut(s)	663, 685, 722, 730, 847
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	2 cut(s)	689, 789
Csp6I	GTAC	3 cut(s)	173, 646, 817
CviAII	CATG	8 cut(s)	140, 161, 214, 235, 308, 642, 655, 742
CviQI	GTAC	3 cut(s)	173, 646, 817
DdeI	CTNAG	3 cut(s)	756, 870, 915
DpnI	GATC	2 cut(s)	50, 233
DpnII	GATC	2 cut(s)	48, 231
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	6 cut(s)	195, 272, 297, 519, 557, 670
EarI	CTCTTC	6 cut(s)	195, 272, 297, 519, 557, 670
Ecl136II	GAGCTC	2 cut(s)	205, 505
Eco130I	CCWWGG	2 cut(s)	160, 723
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	2 cut(s)	207, 507
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	2 cut(s)	205, 505
Eco88I	CYCGRG	3 cut(s)	44, 101, 500
EcoICRI	GAGCTC	2 cut(s)	205, 505
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	578, 834
EcoT14I	CCWWGG	2 cut(s)	160, 723
EcoT38I	GRGCYC	2 cut(s)	207, 507
ErhI	CCWWGG	2 cut(s)	160, 723
FaeI	CATG	8 cut(s)	143, 164, 217, 238, 311, 645, 658, 745
FatI	CATG	8 cut(s)	139, 160, 213, 234, 307, 641, 654, 741
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	2 cut(s)	273, 794
FriOI	GRGCYC	2 cut(s)	207, 507
Fsp4HI	GCNGC	2 cut(s)	273, 794
FspBI	CTAG	3 cut(s)	72, 131, 354
FspI	TGCGCA	1 cut(s)	846
GlaI	GCGC	5 cut(s)	662, 684, 721, 729, 846
GluI	GCNGC	2 cut(s)	273, 794
GsaI	CCCAGC	1 cut(s)	909
HaeII	RGCGCY	1 cut(s)	731
HaeIII	GGCC	3 cut(s)	383, 606, 740
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	2 cut(s)	689, 789
HhaI	GCGC	5 cut(s)	663, 685, 722, 730, 847
Hin1II	CATG	8 cut(s)	143, 164, 217, 238, 311, 645, 658, 745
Hin6I	GCGC	5 cut(s)	661, 683, 720, 728, 845
HinP1I	GCGC	5 cut(s)	661, 683, 720, 728, 845
HincII	GTYRAC	2 cut(s)	679, 926
HindII	GTYRAC	2 cut(s)	679, 926
HinfI	GANTC	6 cut(s)	120, 165, 413, 465, 748, 922
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	74, 412, 478
Hpy166II	GTNNAC	4 cut(s)	679, 716, 817, 926
Hpy188I	TCNGA	1 cut(s)	736
Hpy188III	TCNNGA	3 cut(s)	46, 262, 348
Hpy8I	GTNNAC	4 cut(s)	679, 716, 817, 926
Hpy99I	CGWCG	3 cut(s)	599, 683, 863
HpyAV	CCTTC	6 cut(s)	3, 105, 144, 582, 706, 844
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	2 cut(s)	312, 813
HpyCH4V	TGCA	5 cut(s)	77, 86, 211, 716, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 502, 707, 902, 911
HpyF3I	CTNAG	3 cut(s)	756, 870, 915
HpySE526I	ACGT	2 cut(s)	312, 813
Hsp92II	CATG	8 cut(s)	143, 164, 217, 238, 311, 645, 658, 745
HspAI	GCGC	5 cut(s)	661, 683, 720, 728, 845
Kpn2I	TCCGGA	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	48, 231
LguI	GCTCTTC	4 cut(s)	195, 297, 519, 670
LmnI	GCTCC	3 cut(s)	441, 501, 698
Lsp1109I	GCAGC	2 cut(s)	259, 780
MaeI	CTAG	3 cut(s)	72, 131, 354
MaeII	ACGT	2 cut(s)	312, 813
MaeIII	GTNAC	3 cut(s)	39, 399, 637
MalI	GATC	2 cut(s)	50, 233
MboI	GATC	2 cut(s)	48, 231
MboII	GAAGA	9 cut(s)	129, 160, 212, 250, 289, 314, 506, 544, 657
MhlI	GDGCHC	4 cut(s)	207, 507, 514, 718
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	2 cut(s)	78, 155
MluNI	TGGCCA	1 cut(s)	383
MlyI	GAGTC	2 cut(s)	407, 931
MmeI	TCCRAC	3 cut(s)	493, 646, 869
Mox20I	TGGCCA	1 cut(s)	383
MroI	TCCGGA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	854
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	3 cut(s)	14, 81, 452
MslI	CAYNNNNRTG	1 cut(s)	372
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	2 cut(s)	580, 836
Mva1269I	GAATGC	1 cut(s)	898
MvaI	CCWGG	2 cut(s)	580, 836
MvnI	CGCG	5 cut(s)	661, 683, 720, 783, 821
MwoI	GCNNNNNNNGC	5 cut(s)	83, 502, 707, 902, 911
NcoI	CCATGG	1 cut(s)	160
NdeII	GATC	2 cut(s)	48, 231
NlaIII	CATG	8 cut(s)	143, 164, 217, 238, 311, 645, 658, 745
NlaIV	GGNNCC	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	637
NsbI	TGCGCA	1 cut(s)	846
NspV	TTCGAA	1 cut(s)	123
PaeR7I	CTCGAG	3 cut(s)	44, 101, 500
PceI	AGGCCT	1 cut(s)	606
PciSI	GCTCTTC	4 cut(s)	195, 297, 519, 670
PctI	GAATGC	1 cut(s)	898
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	4 cut(s)	120, 165, 465, 748
PflMI	CCANNNNNTGG	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	274, 795
PleI	GAGTC	2 cut(s)	407, 930
PpsI	GAGTC	2 cut(s)	407, 930
PshBI	ATTAAT	1 cut(s)	81
Psp124BI	GAGCTC	2 cut(s)	207, 507
Psp6I	CCWGG	2 cut(s)	578, 834
PspFI	CCCAGC	1 cut(s)	905
PspGI	CCWGG	2 cut(s)	578, 834
PspN4I	GGNNCC	1 cut(s)	833
PspPI	GGNCC	1 cut(s)	350
PspXI	VCTCGAGB	2 cut(s)	101, 500
PstNI	CAGNNNCTG	2 cut(s)	585, 763
RsaI	GTAC	3 cut(s)	174, 647, 818
RsaNI	GTAC	3 cut(s)	173, 646, 817
RseI	CAYNNNNRTG	1 cut(s)	372
SacI	GAGCTC	2 cut(s)	207, 507
SalI	GTCGAC	1 cut(s)	677
SapI	GCTCTTC	4 cut(s)	195, 297, 519, 670
SaqAI	TTAA	3 cut(s)	14, 81, 452
SatI	GCNGC	2 cut(s)	273, 794
Sau3AI	GATC	2 cut(s)	48, 231
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	2 cut(s)	407, 931
ScrFI	CCNGG	2 cut(s)	580, 836
SduI	GDGCHC	4 cut(s)	207, 507, 514, 718
Sfr274I	CTCGAG	3 cut(s)	44, 101, 500
SfuI	TTCGAA	1 cut(s)	123
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	3 cut(s)	44, 101, 500
SmiMI	CAYNNNNRTG	1 cut(s)	372
SmlI	CTYRAG	4 cut(s)	44, 101, 262, 500
SmoI	CTYRAG	4 cut(s)	44, 101, 262, 500
Sse9I	AATT	2 cut(s)	78, 155
SseBI	AGGCCT	1 cut(s)	606
SsiI	CCGC	1 cut(s)	223
SspI	AATATT	1 cut(s)	68
SspMI	CTAG	3 cut(s)	72, 131, 354
SstI	GAGCTC	2 cut(s)	207, 507
StuI	AGGCCT	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	578, 834
StyI	CCWWGG	2 cut(s)	160, 723
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	2 cut(s)	315, 816
TaqI	TCGA	7 cut(s)	45, 102, 123, 501, 601, 678, 858
TasI	AATT	2 cut(s)	78, 155
TfiI	GAWTC	4 cut(s)	120, 165, 465, 748
Tru1I	TTAA	3 cut(s)	14, 81, 452
Tru9I	TTAA	3 cut(s)	14, 81, 452
TscAI	CASTG	3 cut(s)	331, 590, 937
TseFI	GTSAC	1 cut(s)	637
TseI	GCWGC	2 cut(s)	272, 793
Tsp45I	GTSAC	1 cut(s)	637
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	3 cut(s)	331, 590, 937
Van91I	CCANNNNNTGG	1 cut(s)	585
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	1 cut(s)	350
VspI	ATTAAT	1 cut(s)	81
XapI	RAATTY	1 cut(s)	155
XhoI	CTCGAG	3 cut(s)	44, 101, 500
XmiI	GTMKAC	1 cut(s)	678
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	3 cut(s)	72, 131, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.