Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008456

Physical Location & Seq

Genomic Coordinates Reverse (-)

8652116 .. 8654732

Gene Structure 2617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1713 bp

ATGGCGTCCGCCGTCTTAGCGAACCGGAACGAACCCAATTGGCCGCAGCAACCCAGAGGTGGAGGAGCCGGAGCCGGAGGAGGATTCATGGGGAAAGTTCCCTTTTCTTCTTCAAACACTCACCGTAACCCTAACCCTAAAAAGCGACAATTCCAAGCTCATCATTCCGATTTTAACGATGAGTCGCCGGCCGTCACTCAGACTGCATCAGACGACGCTTCGTCGATCAACCACCATCGGCGATCGAACACAAACGACGTCAATCCCGTTCAGTCCCAATACGTCAGCTTCAACATCGCGAGCTATTCGAGAAAAGAGCTGGTTGAGCTCAAGAACCGCCTCCTCTCTGAGCTCGACCAGATTCGCGTCCTCAAGAATCAAATTGAAGCCGGCGACTTCAACCCTAAGTCGGCTCACAAGAAGCCGATTGGCAATAAGAAGATGGCTGGGTCGAAACGGTCCTTACCGATCGCTCACGGCAAGGAATCGAGTTCTAATTCCAAGAGGTCGCATTTGGAAAACGGGGATTCGATGAAGAATTGTGGGCAGGTTTTATTCAAGCTGATGAAGCAGAAGTACGCCTGGATCTTCAACAGGCCGGTTGATGTGGTTACGTTGGGCCTTCATGATTACTACGACATCATCAAGAAGCCGATGGATCTCGGCACTGTCAAAACCAATCTTGCCAAGGGTCTCTATTCAACGCCTTCTGATTTCTCAGCTGATGTACGATTGACTTTCGAGAATGCCATGCGGTACAATCCCCAAGGCCACGAGGTGTATAATTATGCCAATCAGCTTCGTTCGAGGTTTGAGGAGTTGTTTCAGCCTCTGATTGACAAACATGGAGATGAATTCCGGTCCGAAAAGGGTTCTGATGAGGAATTGCAGGCGAGTTCCTGGAACCATGTTGAGCCCGAGAGGGTTTCAAGGAGGGAGGCGCCTGTTCGGATCGAGAAGAAACCTGAGCCAGTTCGGCCTCCGCCAGTCCAATCATCTCCCGTTCCAGCTCCTGTGAGCTCATCAAACCCGTTGTCAAATCCAGCATTGGCGCAATCTTCTCCTGTGAGGACGAACTCACAGTTGAAGGGGTCTGGAGTGAAGCCATTGAAGCAGCCGAAGCCAAAGGCGAAGGACCCAAACAAGAGGGATATGAGTATGGAGGAGAAGCAAAAGTTGGGAATTGGGTTGCAGAGTTTGCCTCAGGAGAAGATGGAGCAGGTTGTGCAGATTATAAGGAAGAGGAATGGGCATTTGAAGCAGGATGGGGATGAGATTGAGCTTGACATTGAGGCCGTCGATACGGAGACCCTTTGGGAGCTTGATCGGCTTGTGACGAATTGGAAGAAGATGGTTAGCAAGATAAAGCGGCAAGCATTGATGGGCAACACCAACAGCAACAGCAATAGCAACATTGCTTCAAACAGAGGCCACGGGGATCAACCTGCGAGTGAGAAAGTTGAAGTAGCAGCAACAGCAGAGCCAAAGAGGTCGAAAAAAGGCGAAGCAGGAGATGAAGATGTGGACATTGGCGATGACATGCCAATGAGCAGCTTCCCACCAGTGGAGATTGAGAAAGATGTAGGTGGCCATGCTAGCAGTGACAGTTCAAGCAGCTCTGGTAGTTCGAGCAGTGGCTCCTCCTCATCAAGCGATTCAGATTCTGGTACTTCTTCAGGGAGTGACTCAGATGACGATAACGCTCAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007346 GO:0008150 GO:0009292 GO:0009294 GO:0009987 GO:0022622 GO:0032501 GO:0032502 GO:0044764 GO:0045787 GO:0045931 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051704 GO:0051726 GO:0065007 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

571

Amino Acids

62.62

Weight (kDa)

8.25

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	181 - 265	2e-20	Bromodomain
BET	PF17035	385 - 446	1.7e-21	Bromodomain extra-terminal - transcription regulation

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10550 AT5G65630
fragaria_vesca	FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150
malus_domestica	MD05G1049900.v1.1 MD10G1057000.v1.1
prunus_persica	Prupe.8G075200_v2.0.a1
pyrus_communis	pycom05g04180 pycom10g04390
rosa_chinensis	RchiOBHm_Chr6g0269471
rosa_laevigata	RLG00000013850
rosa_roxburghii	Rroxscaffold_7G00198710
rosa_rugosa	Rorug06G0048300 Rorug06G0048400
rosa_samantha	Rh6AG168300 Rh6BG173600 Rh6CG167900 Rh6DG159900
rosa_wichuraiana	Rw6G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1235
AatII	GACGTC	1 cut(s)	261
Acc36I	ACCTGC	3 cut(s)	538, 1210, 1453
AccB1I	GGYRCC	1 cut(s)	940
AccII	CGCG	2 cut(s)	299, 366
AciI	CCGC	6 cut(s)	9, 44, 337, 754, 983, 1369
AclWI	GGATC	4 cut(s)	593, 666, 959, 1446
AcoI	YGGCCR	3 cut(s)	41, 189, 1588
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	1 cut(s)	1659
AcyI	GRCGYC	3 cut(s)	5, 258, 941
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	4 cut(s)	578, 729, 758, 1669
AfiI	CCNNNNNNNGG	3 cut(s)	59, 409, 1564
AhdI	GACNNNNNGTC	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	581, 899
AjuI	GAANNNNNNNTTGG	2 cut(s)	1160, 1192
Alw21I	GWGCWC	3 cut(s)	330, 354, 1022
Alw26I	GTCTC	2 cut(s)	698, 1301
AlwI	GGATC	4 cut(s)	593, 666, 959, 1446
AlwNI	CAGNNNCTG	3 cut(s)	832, 1013, 1664
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	9 cut(s)	41, 189, 596, 619, 769, 977, 1293, 1429, 1588
ApeKI	GCWGC	5 cut(s)	46, 1114, 1469, 1551, 1614
ApoI	RAATTY	1 cut(s)	854
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
AspLEI	GCGC	2 cut(s)	943, 1054
AspS9I	GGNCC	4 cut(s)	459, 619, 861, 1135
AsuHPI	GGTGA	1 cut(s)	113
AsuNHI	GCTAGC	1 cut(s)	1595
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	3 cut(s)	459, 861, 1135
AxyI	CCTNAGG	1 cut(s)	1203
BalI	TGGCCA	1 cut(s)	1590
BanI	GGYRCC	1 cut(s)	940
BanII	GRGCYC	4 cut(s)	330, 354, 918, 1022
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BauI	CACGAG	1 cut(s)	773
Bbv12I	GWGCWC	3 cut(s)	330, 354, 1022
BbvI	GCAGC	5 cut(s)	58, 1126, 1481, 1563, 1626
BccI	CCATC	7 cut(s)	243, 436, 649, 1207, 1259, 1345, 1375
BceAI	ACGGC	3 cut(s)	176, 493, 1280
BciT130I	CCWGG	2 cut(s)	583, 901
BcoDI	GTCTC	2 cut(s)	698, 1301
BfaI	CTAG	2 cut(s)	1596, 1711
BfoI	RGCGCY	1 cut(s)	944
BfuAI	ACCTGC	3 cut(s)	538, 1210, 1453
BglI	GCCNNNNNGGC	1 cut(s)	976
BisI	GCNGC	7 cut(s)	44, 47, 1115, 1370, 1470, 1552, 1615
BlsI	GCNGC	7 cut(s)	45, 48, 1116, 1371, 1471, 1553, 1616
Bme1390I	CCNGG	2 cut(s)	583, 901
Bme18I	GGWCC	3 cut(s)	459, 861, 1135
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	4 cut(s)	459, 619, 861, 1135
BmiI	GGNNCC	6 cut(s)	67, 73, 905, 942, 1137, 1639
BmrFI	CCNGG	2 cut(s)	583, 901
BmsI	GCATC	1 cut(s)	215
BmtI	GCTAGC	1 cut(s)	1599
BplI	GAGNNNNNCTC	2 cut(s)	1186, 1218
BpmI	CTGGAG	1 cut(s)	1116
Bpu10I	CCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	2 cut(s)	314, 356
BsaHI	GRCGYC	3 cut(s)	5, 258, 941
BsaI	GGTCTC	2 cut(s)	698, 1301
BsaJI	CCNNGG	3 cut(s)	687, 766, 1432
BsaWI	WCCGGW	2 cut(s)	24, 858
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 409, 1564
Bse118I	RCCGGY	3 cut(s)	187, 389, 598
Bse1I	ACTGG	3 cut(s)	971, 986, 1562
Bse21I	CCTNAGG	1 cut(s)	1203
Bse3DI	GCAATG	1 cut(s)	1413
BseBI	CCWGG	2 cut(s)	583, 901
BseDI	CCNNGG	3 cut(s)	687, 766, 1432
BseGI	GGATG	2 cut(s)	1270, 1276
BseLI	CCNNNNNNNGG	3 cut(s)	59, 409, 1564
BseMI	GCAATG	1 cut(s)	1413
BseMII	CTCAG	6 cut(s)	212, 339, 732, 957, 1217, 1701
BseNI	ACTGG	3 cut(s)	971, 986, 1562
BseRI	GAGGAG	7 cut(s)	78, 93, 332, 830, 1178, 1630, 1633
BseX3I	CGGCCG	1 cut(s)	189
BseXI	GCAGC	5 cut(s)	58, 1126, 1481, 1563, 1626
BseYI	CCCAGC	1 cut(s)	446
BsgI	GTGCAG	1 cut(s)	1247
Bsh1236I	CGCG	2 cut(s)	299, 366
Bsh1285I	CGRYCG	3 cut(s)	192, 245, 471
BshFI	GGCC	9 cut(s)	43, 191, 598, 621, 771, 979, 1295, 1431, 1590
BshNI	GGYRCC	1 cut(s)	940
BsiEI	CGRYCG	3 cut(s)	192, 245, 471
BsiHKAI	GWGCWC	3 cut(s)	330, 354, 1022
BsiHKCI	CYCGRG	1 cut(s)	917
BsiSI	CCGG	7 cut(s)	25, 69, 75, 188, 390, 599, 859
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	3 cut(s)	59, 409, 1564
BsmAI	GTCTC	2 cut(s)	698, 1301
BsmFI	GGGAC	1 cut(s)	259
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	9 cut(s)	43, 191, 598, 621, 771, 979, 1295, 1431, 1590
Bso31I	GGTCTC	2 cut(s)	698, 1301
BsoBI	CYCGRG	1 cut(s)	917
Bsp1286I	GDGCHC	4 cut(s)	330, 354, 918, 1022
Bsp143I	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
Bsp68I	TCGCGA	1 cut(s)	299
BspACI	CCGC	6 cut(s)	9, 44, 337, 754, 983, 1369
BspANI	GGCC	9 cut(s)	43, 191, 598, 621, 771, 979, 1295, 1431, 1590
BspCNI	CTCAG	6 cut(s)	211, 340, 731, 958, 1216, 1700
BspFNI	CGCG	2 cut(s)	299, 366
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	6 cut(s)	67, 73, 905, 942, 1137, 1639
BspMI	ACCTGC	3 cut(s)	538, 1210, 1453
BspOI	GCTAGC	1 cut(s)	1599
BspPI	GGATC	4 cut(s)	593, 666, 959, 1446
BspT107I	GGYRCC	1 cut(s)	940
BspTNI	GGTCTC	2 cut(s)	698, 1301
BsrDI	GCAATG	1 cut(s)	1413
BsrFI	RCCGGY	3 cut(s)	187, 389, 598
BsrI	ACTGG	3 cut(s)	971, 986, 1562
BssAI	RCCGGY	3 cut(s)	187, 389, 598
BssECI	CCNNGG	3 cut(s)	687, 766, 1432
BssMI	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
BssNI	GRCGYC	3 cut(s)	5, 258, 941
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	2 cut(s)	687, 766
Bst2BI	CACGAG	1 cut(s)	773
Bst2UI	CCWGG	2 cut(s)	583, 901
Bst4CI	ACNGT	5 cut(s)	125, 459, 670, 1083, 1607
Bst6I	CTCTTC	1 cut(s)	1235
BstACI	GRCGYC	3 cut(s)	5, 258, 941
BstAPI	GCANNNNNTGC	2 cut(s)	1198, 1225
BstC8I	GCNNGC	6 cut(s)	189, 301, 391, 891, 1374, 1597
BstDEI	CTNAG	8 cut(s)	16, 198, 348, 405, 718, 966, 1203, 1687
BstDSI	CCRYGG	1 cut(s)	1432
BstF5I	GGATG	2 cut(s)	1270, 1276
BstFNI	CGCG	2 cut(s)	299, 366
BstH2I	RGCGCY	1 cut(s)	944
BstHHI	GCGC	2 cut(s)	943, 1054
BstKTI	GATC	8 cut(s)	228, 245, 471, 588, 661, 954, 1327, 1441
BstMAI	GTCTC	2 cut(s)	698, 1301
BstMBI	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
BstMCI	CGRYCG	3 cut(s)	192, 245, 471
BstNI	CCWGG	2 cut(s)	583, 901
BstNSI	RCATGY	1 cut(s)	1543
BstSCI	CCNGG	2 cut(s)	581, 899
BstUI	CGCG	2 cut(s)	299, 366
BstV1I	GCAGC	5 cut(s)	58, 1126, 1481, 1563, 1626
BstX2I	RGATCY	2 cut(s)	585, 658
BstYI	RGATCY	2 cut(s)	585, 658
BstZI	CGGCCG	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	1203
BsuRI	GGCC	9 cut(s)	43, 191, 598, 621, 771, 979, 1295, 1431, 1590
BtgI	CCRYGG	1 cut(s)	1432
BtgZI	GCGATG	2 cut(s)	280, 1548
BtsCI	GGATG	2 cut(s)	1270, 1276
BtsI	GCAGTG	2 cut(s)	1606, 1639
BtsIMutI	CAGTG	4 cut(s)	666, 1569, 1606, 1639
BtuMI	TCGCGA	1 cut(s)	299
BveI	ACCTGC	3 cut(s)	538, 1210, 1453
Cac8I	GCNNGC	6 cut(s)	189, 301, 391, 891, 1374, 1597
CaiI	CAGNNNCTG	3 cut(s)	832, 1013, 1664
CciI	TCATGA	1 cut(s)	625
CfoI	GCGC	2 cut(s)	943, 1054
Cfr10I	RCCGGY	3 cut(s)	187, 389, 598
Cfr13I	GGNCC	4 cut(s)	459, 619, 861, 1135
CpoI	CGGWCCG	1 cut(s)	861
CseI	GACGC	2 cut(s)	224, 355
Csp6I	GTAC	4 cut(s)	577, 728, 757, 1668
CspI	CGGWCCG	1 cut(s)	861
CviAII	CATG	7 cut(s)	88, 626, 751, 845, 908, 1540, 1592
CviQI	GTAC	4 cut(s)	577, 728, 757, 1668
DdeI	CTNAG	8 cut(s)	16, 198, 348, 405, 718, 966, 1203, 1687
DinI	GGCGCC	1 cut(s)	942
DpnI	GATC	8 cut(s)	227, 244, 470, 587, 660, 953, 1326, 1440
DpnII	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
DraIII	CACNNNGTG	1 cut(s)	778
DriI	GACNNNNNGTC	1 cut(s)	220
EaeI	YGGCCR	3 cut(s)	41, 189, 1588
EagI	CGGCCG	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	1235
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	1235
EciI	GGCGGA	1 cut(s)	972
Ecl136II	GAGCTC	3 cut(s)	328, 352, 1020
EclXI	CGGCCG	1 cut(s)	189
Eco130I	CCWWGG	2 cut(s)	687, 766
Eco24I	GRGCYC	4 cut(s)	330, 354, 918, 1022
Eco31I	GGTCTC	2 cut(s)	698, 1301
Eco47I	GGWCC	3 cut(s)	459, 861, 1135
Eco52I	CGGCCG	1 cut(s)	189
Eco53kI	GAGCTC	3 cut(s)	328, 352, 1020
Eco57I	CTGAAG	1 cut(s)	1659
Eco81I	CCTNAGG	1 cut(s)	1203
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	3 cut(s)	328, 352, 1020
EcoO109I	RGGNCCY	1 cut(s)	1135
EcoRI	GAATTC	1 cut(s)	854
EcoRII	CCWGG	2 cut(s)	581, 899
EcoT14I	CCWWGG	2 cut(s)	687, 766
EcoT38I	GRGCYC	4 cut(s)	330, 354, 918, 1022
EgeI	GGCGCC	1 cut(s)	942
EheI	GGCGCC	1 cut(s)	942
ErhI	CCWWGG	2 cut(s)	687, 766
FaeI	CATG	7 cut(s)	91, 629, 754, 848, 911, 1543, 1595
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	7 cut(s)	87, 625, 750, 844, 907, 1539, 1591
Fnu4HI	GCNGC	7 cut(s)	44, 47, 1115, 1370, 1470, 1552, 1615
FokI	GGATG	2 cut(s)	1277, 1283
FriOI	GRGCYC	4 cut(s)	330, 354, 918, 1022
Fsp4HI	GCNGC	7 cut(s)	44, 47, 1115, 1370, 1470, 1552, 1615
FspBI	CTAG	2 cut(s)	1596, 1711
GlaI	GCGC	2 cut(s)	942, 1053
GluI	GCNGC	7 cut(s)	44, 47, 1115, 1370, 1470, 1552, 1615
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	1116
HaeII	RGCGCY	1 cut(s)	944
HaeIII	GGCC	9 cut(s)	43, 191, 598, 621, 771, 979, 1295, 1431, 1590
HapII	CCGG	7 cut(s)	25, 69, 75, 188, 390, 599, 859
HgaI	GACGC	2 cut(s)	224, 355
HhaI	GCGC	2 cut(s)	943, 1054
Hin1I	GRCGYC	3 cut(s)	5, 258, 941
Hin1II	CATG	7 cut(s)	91, 629, 754, 848, 911, 1543, 1595
Hin6I	GCGC	2 cut(s)	941, 1052
HinP1I	GCGC	2 cut(s)	941, 1052
HinfI	GANTC	9 cut(s)	84, 182, 361, 376, 485, 527, 1655, 1661, 1685
HpaII	CCGG	7 cut(s)	25, 69, 75, 188, 390, 599, 859
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	1525
Hpy8I	GTNNAC	1 cut(s)	1525
Hpy99I	CGWCG	4 cut(s)	218, 226, 260, 1301
HpyAV	CCTTC	4 cut(s)	632, 717, 1081, 1126
HpyCH4III	ACNGT	5 cut(s)	125, 459, 670, 1083, 1607
HpyCH4IV	ACGT	3 cut(s)	258, 282, 614
HpyCH4V	TGCA	4 cut(s)	206, 889, 1192, 1228
HpyF3I	CTNAG	8 cut(s)	16, 198, 348, 405, 718, 966, 1203, 1687
HpySE526I	ACGT	3 cut(s)	258, 282, 614
Hsp92I	GRCGYC	3 cut(s)	5, 258, 941
Hsp92II	CATG	7 cut(s)	91, 629, 754, 848, 911, 1543, 1595
HspAI	GCGC	2 cut(s)	941, 1052
KasI	GGCGCC	1 cut(s)	940
KroI	GCCGGC	2 cut(s)	187, 389
KroNI	GCCGGC	2 cut(s)	189, 391
Kzo9I	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
LmnI	GCTCC	6 cut(s)	65, 71, 1015, 1216, 1318, 1643
Lsp1109I	GCAGC	5 cut(s)	58, 1126, 1481, 1563, 1626
LweI	GCATC	1 cut(s)	215
MaeI	CTAG	2 cut(s)	1596, 1711
MaeII	ACGT	3 cut(s)	258, 282, 614
MaeIII	GTNAC	6 cut(s)	125, 193, 610, 1333, 1601, 1682
MalI	GATC	8 cut(s)	227, 244, 470, 587, 660, 953, 1326, 1440
MboI	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	2 cut(s)	585, 658
MhlI	GDGCHC	4 cut(s)	330, 354, 918, 1022
MlsI	TGGCCA	1 cut(s)	1590
MluNI	TGGCCA	1 cut(s)	1590
Mly113I	GGCGCC	1 cut(s)	941
MlyI	GAGTC	2 cut(s)	191, 1679
Mox20I	TGGCCA	1 cut(s)	1590
MroNI	GCCGGC	2 cut(s)	187, 389
MscI	TGGCCA	1 cut(s)	1590
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	849, 1544
Msp20I	TGGCCA	1 cut(s)	1590
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	7 cut(s)	25, 69, 75, 188, 390, 599, 859
MspR9I	CCNGG	2 cut(s)	583, 901
MunI	CAATTG	1 cut(s)	37
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	2 cut(s)	583, 901
MvnI	CGCG	2 cut(s)	299, 366
NaeI	GCCGGC	2 cut(s)	189, 391
NarI	GGCGCC	1 cut(s)	941
NdeII	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
NgoMIV	GCCGGC	2 cut(s)	187, 389
NheI	GCTAGC	1 cut(s)	1595
NlaIII	CATG	7 cut(s)	91, 629, 754, 848, 911, 1543, 1595
NlaIV	GGNNCC	6 cut(s)	67, 73, 905, 942, 1137, 1639
NmeAIII	GCCGAG	1 cut(s)	642
NmuCI	GTSAC	4 cut(s)	193, 1333, 1601, 1682
NruI	TCGCGA	1 cut(s)	299
NspI	RCATGY	1 cut(s)	1543
PagI	TCATGA	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	751
PdiI	GCCGGC	2 cut(s)	189, 391
PfeI	GAWTC	7 cut(s)	84, 361, 376, 485, 527, 1655, 1661
PfoI	TCCNGGA	1 cut(s)	899
PkrI	GCNGC	7 cut(s)	45, 48, 1116, 1371, 1471, 1553, 1616
Ple19I	CGATCG	2 cut(s)	245, 471
PleI	GAGTC	2 cut(s)	190, 1679
PluTI	GGCGCC	1 cut(s)	944
PpsI	GAGTC	2 cut(s)	190, 1679
PpuMI	RGGWCCY	1 cut(s)	1135
PsiI	TTATAA	1 cut(s)	1235
Psp124BI	GAGCTC	3 cut(s)	330, 354, 1022
Psp5II	RGGWCCY	1 cut(s)	1135
Psp6I	CCWGG	2 cut(s)	581, 899
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	581, 899
PspN4I	GGNNCC	6 cut(s)	67, 73, 905, 942, 1137, 1639
PspPI	GGNCC	4 cut(s)	459, 619, 861, 1135
PspPPI	RGGWCCY	1 cut(s)	1135
PstNI	CAGNNNCTG	3 cut(s)	832, 1013, 1664
PsuI	RGATCY	2 cut(s)	585, 658
PvuI	CGATCG	2 cut(s)	245, 471
PvuII	CAGCTG	1 cut(s)	722
RruI	TCGCGA	1 cut(s)	299
RsaI	GTAC	4 cut(s)	578, 729, 758, 1669
RsaNI	GTAC	4 cut(s)	577, 728, 757, 1668
RseI	CAYNNNNRTG	2 cut(s)	849, 1544
Rsr2I	CGGWCCG	1 cut(s)	861
RsrII	CGGWCCG	1 cut(s)	861
SacI	GAGCTC	3 cut(s)	330, 354, 1022
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	7 cut(s)	44, 47, 1115, 1370, 1470, 1552, 1615
Sau3AI	GATC	8 cut(s)	225, 242, 468, 585, 658, 951, 1324, 1438
Sau96I	GGNCC	4 cut(s)	459, 619, 861, 1135
SchI	GAGTC	2 cut(s)	191, 1679
ScrFI	CCNGG	2 cut(s)	583, 901
SduI	GDGCHC	4 cut(s)	330, 354, 918, 1022
SfaNI	GCATC	1 cut(s)	215
SfoI	GGCGCC	1 cut(s)	942
SinI	GGWCC	3 cut(s)	459, 861, 1135
SmiMI	CAYNNNNRTG	2 cut(s)	849, 1544
SmlI	CTYRAG	2 cut(s)	329, 371
SmoI	CTYRAG	2 cut(s)	329, 371
SsiI	CCGC	6 cut(s)	9, 44, 337, 754, 983, 1369
SspDI	GGCGCC	1 cut(s)	940
SspMI	CTAG	2 cut(s)	1596, 1711
SstI	GAGCTC	3 cut(s)	330, 354, 1022
StyD4I	CCNGG	2 cut(s)	581, 899
StyI	CCWWGG	2 cut(s)	687, 766
TaaI	ACNGT	5 cut(s)	125, 459, 670, 1083, 1607
TaiI	ACGT	3 cut(s)	261, 285, 617
TauI	GCSGC	2 cut(s)	46, 1372
TfiI	GAWTC	7 cut(s)	84, 361, 376, 485, 527, 1655, 1661
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	4 cut(s)	673, 1569, 1606, 1639
TseFI	GTSAC	4 cut(s)	193, 1333, 1601, 1682
TseI	GCWGC	5 cut(s)	46, 1114, 1469, 1551, 1614
Tsp45I	GTSAC	4 cut(s)	193, 1333, 1601, 1682
TspDTI	ATGAA	6 cut(s)	76, 548, 581, 614, 867, 1530
TspGWI	ACGGA	1 cut(s)	1319
TspRI	CASTG	4 cut(s)	673, 1569, 1606, 1639
VpaK11BI	GGWCC	3 cut(s)	459, 861, 1135
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	1543
XspI	CTAG	2 cut(s)	1596, 1711
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.