Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008456

Physical Location & Seq

Genomic Coordinates Reverse (-)

6416710 .. 6417442

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTAACAACCCCACCACTAATCATGAACAAGAAAGGGAGATTAACCAAAAGGAGGAAAAGATCAAAGAGCTAGAAACTAGAATTGGTGAGCAGGATAGCCGCCTCAGTTATCTCCAATCCAGTGGCTTCCAGCTTGCAAACTTCTACTTCGTCTTTCAAGGAGTTATTCTGACAGCGATCGTTAATGGCAACTCATCCCTCAGATGCAAAGACATCTGGTTCCTCTTGAGTCTCTCTCTCTTAGCAGCCATGCTTAATTTGGTCTCGTTGCTCATAATTGGTCGCAATTATCTCCGAAGCTACGTCCAGCGAGACCAAACCTGGGTTGAGTGCAATAAATTACAAAGTGATGTGGAACGTCTTAAGTCTTCACATCACTCCAGAAGGCTCGGTTATGAACTTGAATTGACATCTTCGCCGTTAACACCGCTGACTGAACATCACAATTCTACAAGCCAGGAATCAGTTGATGAACGTGAACGTGAACAAGGGCAGAGCAGCATTATCCATGCTGATCCTTGGGAACAAGGAAAGATGATCAATGTAAACACCCAATGTCGAATAATGATAAATGCATTAGGCTTTGTGAAGGTGCAAAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0007346 GO:0008150 GO:0009292 GO:0009294 GO:0009987 GO:0022622 GO:0032501 GO:0032502 GO:0044764 GO:0045787 GO:0045931 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051704 GO:0051726 GO:0065007 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

202

Amino Acids

23.22

Weight (kDa)

6.08

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008456)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10550 AT5G65630
fragaria_vesca	FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150
malus_domestica	MD05G1049900.v1.1 MD10G1057000.v1.1
prunus_persica	Prupe.8G075200_v2.0.a1
pyrus_communis	pycom05g04180 pycom10g04390
rosa_chinensis	RchiOBHm_Chr6g0269471
rosa_laevigata	RLG00000013850
rosa_roxburghii	Rroxscaffold_7G00198710
rosa_rugosa	Rorug06G0048300 Rorug06G0048400
rosa_samantha	Rh6AG168300 Rh6BG173600 Rh6CG167900 Rh6DG159900
rosa_wichuraiana	Rw6G014490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	103, 431
AclWI	GGATC	1 cut(s)	512
AfiI	CCNNNNNNNGG	2 cut(s)	55, 325
AflII	CTTAAG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	161, 407
AjnI	CCWGG	2 cut(s)	323, 459
AjuI	GAANNNNNNNTTGG	2 cut(s)	69, 101
AluBI	AGCT	3 cut(s)	73, 136, 303
AluI	AGCT	3 cut(s)	73, 136, 303
Alw26I	GTCTC	3 cut(s)	239, 271, 309
AlwI	GGATC	1 cut(s)	512
ApeKI	GCWGC	2 cut(s)	248, 501
AsuHPI	GGTGA	1 cut(s)	101
BbsI	GAAGAC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	260, 513
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	2 cut(s)	325, 461
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	3 cut(s)	239, 271, 309
BfaI	CTAG	2 cut(s)	74, 81
BfrI	CTTAAG	1 cut(s)	365
BisI	GCNGC	3 cut(s)	103, 249, 502
BlsI	GCNGC	3 cut(s)	104, 250, 503
Bme1390I	CCNGG	2 cut(s)	325, 461
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	2 cut(s)	325, 461
BmsI	GCATC	1 cut(s)	197
BpiI	GAAGAC	1 cut(s)	363
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
BpmI	CTGGAG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	250
BsaI	GGTCTC	2 cut(s)	271, 309
BsaJI	CCNNGG	2 cut(s)	324, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 325
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	2 cut(s)	325, 461
BseDI	CCNNGG	2 cut(s)	324, 521
BseGI	GGATG	1 cut(s)	197
BseLI	CCNNNNNNNGG	2 cut(s)	55, 325
BseMII	CTCAG	2 cut(s)	121, 217
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	260, 513
Bsh1285I	CGRYCG	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	55, 325
BsmAI	GTCTC	3 cut(s)	239, 271, 309
Bso31I	GGTCTC	2 cut(s)	271, 309
Bsp143I	GATC	4 cut(s)	63, 180, 517, 540
BspACI	CCGC	2 cut(s)	103, 431
BspCNI	CTCAG	2 cut(s)	120, 216
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	512
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	2 cut(s)	271, 309
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	2 cut(s)	324, 521
BssMI	GATC	4 cut(s)	63, 180, 517, 540
BssT1I	CCWWGG	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	325, 461
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	107, 203, 244
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	4 cut(s)	66, 183, 520, 543
BstMAI	GTCTC	3 cut(s)	239, 271, 309
BstMBI	GATC	4 cut(s)	63, 180, 517, 540
BstMCI	CGRYCG	1 cut(s)	183
BstNI	CCWGG	2 cut(s)	325, 461
BstSCI	CCNGG	2 cut(s)	323, 459
BstV1I	GCAGC	2 cut(s)	260, 513
BstV2I	GAAGAC	1 cut(s)	363
BstXI	CCANNNNNNTGG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	25
CviAII	CATG	3 cut(s)	26, 253, 512
DdeI	CTNAG	3 cut(s)	107, 203, 244
DpnI	GATC	4 cut(s)	65, 182, 519, 542
DpnII	GATC	4 cut(s)	63, 180, 517, 540
Eco130I	CCWWGG	1 cut(s)	521
Eco31I	GGTCTC	2 cut(s)	271, 309
EcoRII	CCWGG	2 cut(s)	323, 459
EcoT14I	CCWWGG	1 cut(s)	521
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	29, 256, 515
FaiI	YATR	6 cut(s)	27, 254, 278, 399, 513, 607
FatI	CATG	3 cut(s)	25, 252, 511
FbaI	TGATCA	1 cut(s)	540
Fnu4HI	GCNGC	3 cut(s)	103, 249, 502
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	3 cut(s)	103, 249, 502
FspBI	CTAG	2 cut(s)	74, 81
GluI	GCNGC	3 cut(s)	103, 249, 502
GsuI	CTGGAG	1 cut(s)	367
Hin1II	CATG	3 cut(s)	29, 256, 515
HincII	GTYRAC	1 cut(s)	426
HindII	GTYRAC	1 cut(s)	426
HinfI	GANTC	2 cut(s)	232, 464
HpaI	GTTAAC	1 cut(s)	426
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	426, 482, 488, 550
Hpy188I	TCNGA	3 cut(s)	174, 206, 299
Hpy188III	TCNNGA	3 cut(s)	26, 229, 384
Hpy8I	GTNNAC	4 cut(s)	426, 482, 488, 550
HpyAV	CCTTC	2 cut(s)	381, 586
HpyCH4IV	ACGT	4 cut(s)	306, 361, 478, 484
HpyCH4V	TGCA	5 cut(s)	140, 210, 336, 578, 598
HpyF3I	CTNAG	3 cut(s)	107, 203, 244
HpySE526I	ACGT	4 cut(s)	306, 361, 478, 484
Hsp92II	CATG	3 cut(s)	29, 256, 515
Ksp22I	TGATCA	1 cut(s)	540
KspAI	GTTAAC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	63, 180, 517, 540
Lsp1109I	GCAGC	2 cut(s)	260, 513
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	74, 81
MaeII	ACGT	4 cut(s)	306, 361, 478, 484
MalI	GATC	4 cut(s)	65, 182, 519, 542
MboI	GATC	4 cut(s)	63, 180, 517, 540
MboII	GAAGA	2 cut(s)	363, 408
MluCI	AATT	7 cut(s)	84, 259, 279, 289, 341, 407, 448
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	4 cut(s)	49, 116, 212, 236
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	5 cut(s)	45, 186, 258, 366, 425
MspA1I	CMGCKG	1 cut(s)	433
MspCI	CTTAAG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	325, 461
MvaI	CCWGG	2 cut(s)	325, 461
NdeII	GATC	4 cut(s)	63, 180, 517, 540
NlaIII	CATG	3 cut(s)	29, 256, 515
NlaIV	GGNNCC	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	580
PagI	TCATGA	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	464
PkrI	GCNGC	3 cut(s)	104, 250, 503
Ple19I	CGATCG	1 cut(s)	183
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	323, 459
PspGI	CCWGG	2 cut(s)	323, 459
PspN4I	GGNNCC	1 cut(s)	224
PvuI	CGATCG	1 cut(s)	183
SaqAI	TTAA	5 cut(s)	45, 186, 258, 366, 425
SatI	GCNGC	3 cut(s)	103, 249, 502
Sau3AI	GATC	4 cut(s)	63, 180, 517, 540
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	325, 461
SetI	ASST	9 cut(s)	75, 138, 305, 309, 326, 364, 481, 487, 597
SfaNI	GCATC	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	229, 365
SmoI	CTYRAG	2 cut(s)	229, 365
Sse9I	AATT	7 cut(s)	84, 259, 279, 289, 341, 407, 448
SsiI	CCGC	2 cut(s)	103, 431
SspMI	CTAG	2 cut(s)	74, 81
StyD4I	CCNGG	2 cut(s)	323, 459
StyI	CCWWGG	1 cut(s)	521
TaiI	ACGT	4 cut(s)	309, 364, 481, 487
TaqI	TCGA	1 cut(s)	562
TasI	AATT	7 cut(s)	84, 259, 279, 289, 341, 407, 448
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	5 cut(s)	45, 186, 258, 366, 425
Tru9I	TTAA	5 cut(s)	45, 186, 258, 366, 425
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	248, 501
TspDTI	ATGAA	3 cut(s)	42, 414, 489
TspRI	CASTG	1 cut(s)	130
Vha464I	CTTAAG	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	2 cut(s)	74, 81
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.