pycom10g04390

Transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
4615533 .. 4616894
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g04390.1

Sequence Viewer

Length: 1362 bp
ATGGCGTCCGCCGTCTTAGCGAACCGGAACGAACCCAATTGGCCGCAGCAACCCAGAGGTGGAGGAGCCGGAGCAGGAGGAGGATTCATGGGGAAAGTCCCCTTTTCTTCTTCAAACACTAACCGTAACCCTAACCCTAAAAAGCGACAATTCCAAGTTCATCATCCCGATTTCAACGATGAGTCACCGGCCGTCACTCAGACTGCATCAGATGACGCTTCGTCGATCAACCACCATCGGCGATCGAACACGAACGACGTAAATCTCGTTCACTCCCAATACGTCAGCTTCAACATCGCGAGCTATTCGGGAAAAGAGCTGGTTGAGCTCAAGAACCGCCTCCTCTTTGAGCTCGACCAGATTCGCGTTCTCAAGAACCGAATTGAAGCCGGCGACTTCAACCCTAAGTCGGCTCATAAGAAGCCGATCGGCAACAAGAAGATGGCTGGGTCGAAACGGCCCTTGCCGGTCGCTCACGGCAAGGAATCGAGTTCCAATTCCAAGAGGTCGCATTTGGAAAATGGGGATTTGATGAAGAATTGCGGGCAGGTATTATCCAAGCTGATGAAGCAGAAGTATGCCTGGATCTTCAACAAACCAGTTGATGTAGTTGCGTTGGGCCTTCACGATTACTACGACATCATCAAGAAACCGATGGATCTCGGCACCGTCAAAACCTATCTCGCCAAGGGTCTCTATCTAACGCCTTCTGATTTTGCAGCTGATGTGAGATTGACTTTCGAGAATGCCATGCGGTACAATCCCCAAGGCCACGAGGTCTACAATTTTGCCAATCAGCTTCGTTCGAGGTTCGAGGAGTTGTTTCAGCCTCTGATTGACAAACACGGAGATGAGTTCCGGTCCGAAAAGGGTTCTGATGAGGAATTGCAGGCGAGTTCCTGGAACCATGTTGAGCCCGAGAGGGTTTCAAGGAGGGAGACGCCTGTTCGGATAGAGAAGAAACCTGAGCCGGTTCGGCCTCCGGCAGTTCGATCGTCTCCCGTTCCAGCTCCTGTGAGTTCATCAAACCCGTCGTCAAATCCAGCATTGGCGCATTCTTCTCCTGTGAGGACGAATTCACAGTTGAAGGGGTCGGGAGTGAAGCCATTGAAGCAGCCGAAGCCAAAGGCGAAGGACCCAAACAAGAGGAATATGAGTATGGAGGAGAAGCAAAAGTTGGGAATTGGGTTGCAGAGTTTGCCTCAGGAGAAGATGGAGCAGGTTGTGCAGATTATAAGGAAGAGGAATGGGCATTTGAAGCAGGATGGGGATGAGATTGAGCTTGACATTGAGGCCGTTGATACGGAGACCCTTTGGGAGCTTGATCGATCGGCTTGTGACGAATTGGAAGAAGATGGTTAG

Protein Analysis

454

Amino Acids

50.72

Weight (kDa)

9.14

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 181 - 265 1.5e-18 Bromodomain
BET PF17035 385 - 443 7.4e-21 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1235
Acc36I ACCTGC 2 cut(s) 538, 1210
AccB1I GGYRCC 1 cut(s) 665
AccI GTMKAC 1 cut(s) 780
AccII CGCG 2 cut(s) 299, 366
AciI CCGC 5 cut(s) 9, 44, 337, 543, 754
AclWI GGATC 2 cut(s) 593, 666
AcoI YGGCCR 2 cut(s) 41, 189
AcsI RAATTY 1 cut(s) 1075
AcyI GRCGYC 2 cut(s) 5, 941
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 2 cut(s) 59, 409
AhdI GACNNNNNGTC 1 cut(s) 220
AjnI CCWGG 2 cut(s) 581, 899
AjuI GAANNNNNNNTTGG 2 cut(s) 1160, 1192
Alw21I GWGCWC 2 cut(s) 330, 354
Alw26I GTCTC 4 cut(s) 698, 932, 1002, 1301
AlwI GGATC 2 cut(s) 593, 666
AlwNI CAGNNNCTG 2 cut(s) 832, 1013
Ama87I CYCGRG 1 cut(s) 917
AoxI GGCC 7 cut(s) 41, 189, 458, 619, 769, 977, 1293
ApeKI GCWGC 3 cut(s) 46, 719, 1114
ApoI RAATTY 1 cut(s) 1075
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AspLEI GCGC 1 cut(s) 1054
AspS9I GGNCC 4 cut(s) 459, 619, 861, 1135
AsuHPI GGTGA 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 917
AvaII GGWCC 2 cut(s) 861, 1135
AxyI CCTNAGG 1 cut(s) 1203
BanI GGYRCC 1 cut(s) 665
BanII GRGCYC 3 cut(s) 330, 354, 918
BauI CACGAG 1 cut(s) 773
Bbv12I GWGCWC 2 cut(s) 330, 354
BbvI GCAGC 3 cut(s) 58, 731, 1126
BccI CCATC 6 cut(s) 243, 436, 649, 1207, 1259, 1349
BceAI ACGGC 4 cut(s) 176, 473, 493, 1280
BcgI CGANNNNNNTGC 2 cut(s) 975, 1009
BciT130I CCWGG 2 cut(s) 583, 901
BcoDI GTCTC 4 cut(s) 698, 932, 1002, 1301
BfuAI ACCTGC 2 cut(s) 538, 1210
BglI GCCNNNNNGGC 1 cut(s) 976
BisI GCNGC 4 cut(s) 44, 47, 720, 1115
BlsI GCNGC 4 cut(s) 45, 48, 721, 1116
Bme1390I CCNGG 2 cut(s) 583, 901
Bme18I GGWCC 2 cut(s) 861, 1135
BmeRI GACNNNNNGTC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 917
BmgT120I GGNCC 4 cut(s) 459, 619, 861, 1135
BmiI GGNNCC 4 cut(s) 67, 667, 905, 1137
BmrFI CCNGG 2 cut(s) 583, 901
BmsI GCATC 1 cut(s) 215
BplI GAGNNNNNCTC 2 cut(s) 1186, 1218
Bpu10I CCTNAGC 1 cut(s) 966
BpuEI CTTGAG 2 cut(s) 314, 356
Bsa29I ATCGAT 1 cut(s) 1327
BsaHI GRCGYC 2 cut(s) 5, 941
BsaI GGTCTC 2 cut(s) 698, 1301
BsaJI CCNNGG 2 cut(s) 687, 766
BsaWI WCCGGW 2 cut(s) 24, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 409
Bse118I RCCGGY 4 cut(s) 187, 389, 466, 970
Bse1I ACTGG 1 cut(s) 599
Bse21I CCTNAGG 1 cut(s) 1203
BseBI CCWGG 2 cut(s) 583, 901
BseCI ATCGAT 1 cut(s) 1327
BseDI CCNNGG 2 cut(s) 687, 766
BseGI GGATG 3 cut(s) 163, 1270, 1276
BseLI CCNNNNNNNGG 2 cut(s) 59, 409
BseMII CTCAG 3 cut(s) 212, 957, 1217
BseNI ACTGG 1 cut(s) 599
BseRI GAGGAG 5 cut(s) 78, 93, 332, 830, 1178
BseX3I CGGCCG 1 cut(s) 189
BseXI GCAGC 3 cut(s) 58, 731, 1126
BseYI CCCAGC 1 cut(s) 446
BsgI GTGCAG 1 cut(s) 1247
Bsh1236I CGCG 2 cut(s) 299, 366
Bsh1285I CGRYCG 6 cut(s) 192, 245, 429, 471, 995, 1331
BshFI GGCC 7 cut(s) 43, 191, 460, 621, 771, 979, 1295
BshNI GGYRCC 1 cut(s) 665
BshVI ATCGAT 1 cut(s) 1327
BsiEI CGRYCG 6 cut(s) 192, 245, 429, 471, 995, 1331
BsiHKAI GWGCWC 2 cut(s) 330, 354
BsiHKCI CYCGRG 1 cut(s) 917
BsiSI CCGG 8 cut(s) 25, 69, 188, 390, 467, 859, 971, 983
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 59, 409
BsmAI GTCTC 4 cut(s) 698, 932, 1002, 1301
BsmBI CGTCTC 2 cut(s) 932, 1002
BsmFI GGGAC 1 cut(s) 83
BsmI GAATGC 2 cut(s) 751, 1054
BsnI GGCC 7 cut(s) 43, 191, 460, 621, 771, 979, 1295
Bso31I GGTCTC 2 cut(s) 698, 1301
BsoBI CYCGRG 1 cut(s) 917
Bsp1286I GDGCHC 3 cut(s) 330, 354, 918
Bsp143I GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
Bsp68I TCGCGA 1 cut(s) 299
BspACI CCGC 5 cut(s) 9, 44, 337, 543, 754
BspANI GGCC 7 cut(s) 43, 191, 460, 621, 771, 979, 1295
BspCNI CTCAG 3 cut(s) 211, 958, 1216
BspDI ATCGAT 1 cut(s) 1327
BspFNI CGCG 2 cut(s) 299, 366
BspLI GGNNCC 4 cut(s) 67, 667, 905, 1137
BspMI ACCTGC 2 cut(s) 538, 1210
BspPI GGATC 2 cut(s) 593, 666
BspT107I GGYRCC 1 cut(s) 665
BspTNI GGTCTC 2 cut(s) 698, 1301
BsrFI RCCGGY 4 cut(s) 187, 389, 466, 970
BsrI ACTGG 1 cut(s) 599
BssAI RCCGGY 4 cut(s) 187, 389, 466, 970
BssECI CCNNGG 2 cut(s) 687, 766
BssMI GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
BssNI GRCGYC 2 cut(s) 5, 941
BssSI CACGAG 1 cut(s) 773
BssT1I CCWWGG 2 cut(s) 687, 766
Bst2BI CACGAG 1 cut(s) 773
Bst2UI CCWGG 2 cut(s) 583, 901
Bst4CI ACNGT 3 cut(s) 125, 670, 1083
Bst6I CTCTTC 1 cut(s) 1235
BstACI GRCGYC 2 cut(s) 5, 941
BstAPI GCANNNNNTGC 2 cut(s) 1198, 1225
BstC8I GCNNGC 4 cut(s) 301, 391, 545, 891
BstDEI CTNAG 5 cut(s) 16, 198, 405, 966, 1203
BstF5I GGATG 3 cut(s) 163, 1270, 1276
BstFNI CGCG 2 cut(s) 299, 366
BstHHI GCGC 1 cut(s) 1054
BstKTI GATC 8 cut(s) 228, 245, 429, 588, 661, 995, 1327, 1331
BstMAI GTCTC 4 cut(s) 698, 932, 1002, 1301
BstMBI GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
BstMCI CGRYCG 6 cut(s) 192, 245, 429, 471, 995, 1331
BstMWI GCNNNNNNNGC 9 cut(s) 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258
BstNI CCWGG 2 cut(s) 583, 901
BstSCI CCNGG 2 cut(s) 581, 899
BstUI CGCG 2 cut(s) 299, 366
BstV1I GCAGC 3 cut(s) 58, 731, 1126
BstX2I RGATCY 2 cut(s) 585, 658
BstYI RGATCY 2 cut(s) 585, 658
BstZI CGGCCG 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 1327
Bsu36I CCTNAGG 1 cut(s) 1203
BsuRI GGCC 7 cut(s) 43, 191, 460, 621, 771, 979, 1295
BsuTUI ATCGAT 1 cut(s) 1327
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 3 cut(s) 163, 1270, 1276
BtuMI TCGCGA 1 cut(s) 299
BveI ACCTGC 2 cut(s) 538, 1210
Cac8I GCNNGC 4 cut(s) 301, 391, 545, 891
CaiI CAGNNNCTG 2 cut(s) 832, 1013
CfoI GCGC 1 cut(s) 1054
Cfr10I RCCGGY 4 cut(s) 187, 389, 466, 970
Cfr13I GGNCC 4 cut(s) 459, 619, 861, 1135
ClaI ATCGAT 1 cut(s) 1327
CpoI CGGWCCG 1 cut(s) 861
CseI GACGC 2 cut(s) 224, 949
Csp6I GTAC 1 cut(s) 757
CspI CGGWCCG 1 cut(s) 861
CviAII CATG 3 cut(s) 88, 751, 908
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 5 cut(s) 16, 198, 405, 966, 1203
DpnI GATC 8 cut(s) 227, 244, 428, 587, 660, 994, 1326, 1330
DpnII GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
DriI GACNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 41, 189
EagI CGGCCG 1 cut(s) 189
Eam1104I CTCTTC 1 cut(s) 1235
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 1235
Ecl136II GAGCTC 2 cut(s) 328, 352
EclXI CGGCCG 1 cut(s) 189
Eco130I CCWWGG 2 cut(s) 687, 766
Eco24I GRGCYC 3 cut(s) 330, 354, 918
Eco31I GGTCTC 2 cut(s) 698, 1301
Eco47I GGWCC 2 cut(s) 861, 1135
Eco52I CGGCCG 1 cut(s) 189
Eco53kI GAGCTC 2 cut(s) 328, 352
Eco81I CCTNAGG 1 cut(s) 1203
Eco88I CYCGRG 1 cut(s) 917
EcoICRI GAGCTC 2 cut(s) 328, 352
EcoO109I RGGNCCY 1 cut(s) 1135
EcoRI GAATTC 1 cut(s) 1075
EcoRII CCWGG 2 cut(s) 581, 899
EcoT14I CCWWGG 2 cut(s) 687, 766
EcoT38I GRGCYC 3 cut(s) 330, 354, 918
ErhI CCWWGG 2 cut(s) 687, 766
Esp3I CGTCTC 2 cut(s) 932, 1002
FaeI CATG 3 cut(s) 91, 754, 911
FaiI YATR 8 cut(s) 89, 417, 579, 752, 909, 1154, 1160, 1235
FaqI GGGAC 1 cut(s) 83
FatI CATG 3 cut(s) 87, 750, 907
FauI CCCGC 1 cut(s) 536
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 44, 47, 720, 1115
FokI GGATG 3 cut(s) 150, 1277, 1283
FriOI GRGCYC 3 cut(s) 330, 354, 918
Fsp4HI GCNGC 4 cut(s) 44, 47, 720, 1115
GlaI GCGC 1 cut(s) 1053
GluI GCNGC 4 cut(s) 44, 47, 720, 1115
GsaI CCCAGC 1 cut(s) 450
HaeIII GGCC 7 cut(s) 43, 191, 460, 621, 771, 979, 1295
HapII CCGG 8 cut(s) 25, 69, 188, 390, 467, 859, 971, 983
HgaI GACGC 2 cut(s) 224, 949
HhaI GCGC 1 cut(s) 1054
Hin1I GRCGYC 2 cut(s) 5, 941
Hin1II CATG 3 cut(s) 91, 754, 911
Hin6I GCGC 1 cut(s) 1052
HinP1I GCGC 1 cut(s) 1052
HinfI GANTC 4 cut(s) 84, 182, 361, 485
HpaII CCGG 8 cut(s) 25, 69, 188, 390, 467, 859, 971, 983
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 2 cut(s) 271, 781
Hpy188I TCNGA 7 cut(s) 201, 211, 712, 834, 865, 877, 951
Hpy8I GTNNAC 2 cut(s) 271, 781
Hpy99I CGWCG 3 cut(s) 226, 260, 1036
HpyAV CCTTC 4 cut(s) 632, 717, 1081, 1126
HpyCH4III ACNGT 3 cut(s) 125, 670, 1083
HpyCH4IV ACGT 2 cut(s) 258, 282
HpyCH4V TGCA 5 cut(s) 206, 719, 889, 1192, 1228
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258
HpyF3I CTNAG 5 cut(s) 16, 198, 405, 966, 1203
HpySE526I ACGT 2 cut(s) 258, 282
Hsp92I GRCGYC 2 cut(s) 5, 941
Hsp92II CATG 3 cut(s) 91, 754, 911
HspAI GCGC 1 cut(s) 1052
KroI GCCGGC 1 cut(s) 389
KroNI GCCGGC 1 cut(s) 391
Kzo9I GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
LmnI GCTCC 5 cut(s) 65, 71, 1015, 1216, 1318
Lsp1109I GCAGC 3 cut(s) 58, 731, 1126
LweI GCATC 1 cut(s) 215
MaeII ACGT 2 cut(s) 258, 282
MaeIII GTNAC 4 cut(s) 125, 183, 193, 1337
MalI GATC 8 cut(s) 227, 244, 428, 587, 660, 994, 1326, 1330
MboI GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
MfeI CAATTG 1 cut(s) 37
MflI RGATCY 2 cut(s) 585, 658
MhlI GDGCHC 3 cut(s) 330, 354, 918
MlyI GAGTC 1 cut(s) 191
MroNI GCCGGC 1 cut(s) 389
MslI CAYNNNNRTG 1 cut(s) 849
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 8 cut(s) 25, 69, 188, 390, 467, 859, 971, 983
MspR9I CCNGG 2 cut(s) 583, 901
MunI CAATTG 1 cut(s) 37
Mva1269I GAATGC 2 cut(s) 751, 1054
MvaI CCWGG 2 cut(s) 583, 901
MvnI CGCG 2 cut(s) 299, 366
MwoI GCNNNNNNNGC 9 cut(s) 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258
NaeI GCCGGC 1 cut(s) 391
NdeII GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
NgoMIV GCCGGC 1 cut(s) 389
NlaIII CATG 3 cut(s) 91, 754, 911
NlaIV GGNNCC 4 cut(s) 67, 667, 905, 1137
NmeAIII GCCGAG 1 cut(s) 642
NmuCI GTSAC 3 cut(s) 183, 193, 1337
NruI TCGCGA 1 cut(s) 299
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 633
PctI GAATGC 2 cut(s) 751, 1054
PdiI GCCGGC 1 cut(s) 391
PfeI GAWTC 3 cut(s) 84, 361, 485
PfoI TCCNGGA 1 cut(s) 899
PkrI GCNGC 4 cut(s) 45, 48, 721, 1116
Ple19I CGATCG 4 cut(s) 245, 429, 995, 1331
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 1135
PsiI TTATAA 1 cut(s) 1235
Psp124BI GAGCTC 2 cut(s) 330, 354
Psp5II RGGWCCY 1 cut(s) 1135
Psp6I CCWGG 2 cut(s) 581, 899
PspFI CCCAGC 1 cut(s) 446
PspGI CCWGG 2 cut(s) 581, 899
PspN4I GGNNCC 4 cut(s) 67, 667, 905, 1137
PspPI GGNCC 4 cut(s) 459, 619, 861, 1135
PspPPI RGGWCCY 1 cut(s) 1135
PsrI GAACNNNNNNTAC 2 cut(s) 252, 284
PstNI CAGNNNCTG 2 cut(s) 832, 1013
PsuI RGATCY 2 cut(s) 585, 658
PvuI CGATCG 4 cut(s) 245, 429, 995, 1331
PvuII CAGCTG 1 cut(s) 722
RruI TCGCGA 1 cut(s) 299
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
RseI CAYNNNNRTG 1 cut(s) 849
Rsr2I CGGWCCG 1 cut(s) 861
RsrII CGGWCCG 1 cut(s) 861
SacI GAGCTC 2 cut(s) 330, 354
SatI GCNGC 4 cut(s) 44, 47, 720, 1115
Sau3AI GATC 8 cut(s) 225, 242, 426, 585, 658, 992, 1324, 1328
Sau96I GGNCC 4 cut(s) 459, 619, 861, 1135
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 2 cut(s) 583, 901
SduI GDGCHC 3 cut(s) 330, 354, 918
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 2 cut(s) 861, 1135
SmiMI CAYNNNNRTG 1 cut(s) 849
SmlI CTYRAG 2 cut(s) 329, 371
SmoI CTYRAG 2 cut(s) 329, 371
SsiI CCGC 5 cut(s) 9, 44, 337, 543, 754
SstI GAGCTC 2 cut(s) 330, 354
StyD4I CCNGG 2 cut(s) 581, 899
StyI CCWWGG 2 cut(s) 687, 766
TaaI ACNGT 3 cut(s) 125, 670, 1083
TaiI ACGT 2 cut(s) 261, 285
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 3 cut(s) 84, 361, 485
TseFI GTSAC 3 cut(s) 183, 193, 1337
TseI GCWGC 3 cut(s) 46, 719, 1114
Tsp45I GTSAC 3 cut(s) 183, 193, 1337
TspDTI ATGAA 5 cut(s) 76, 149, 548, 581, 1011
TspGWI ACGGA 2 cut(s) 861, 1319
VpaK11BI GGWCC 2 cut(s) 861, 1135
XapI RAATTY 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.