Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G10550 AT5G65630 |
| fragaria_vesca | FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 FvH4_2g11150 |
| malus_domestica | MD05G1049900.v1.1 MD10G1057000.v1.1 |
| prunus_persica | Prupe.8G075200_v2.0.a1 |
| pyrus_communis | pycom05g04180 pycom10g04390 |
| rosa_chinensis | RchiOBHm_Chr6g0269471 |
| rosa_laevigata | RLG00000013850 |
| rosa_roxburghii | Rroxscaffold_7G00198710 |
| rosa_rugosa | Rorug06G0048300 Rorug06G0048400 |
| rosa_samantha | Rh6AG168300 Rh6BG173600 Rh6CG167900 Rh6DG159900 |
| rosa_wichuraiana | Rw6G014490 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1235 |
| Acc36I | ACCTGC | 2 cut(s) | 538, 1210 |
| AccB1I | GGYRCC | 1 cut(s) | 665 |
| AccI | GTMKAC | 1 cut(s) | 780 |
| AccII | CGCG | 2 cut(s) | 299, 366 |
| AciI | CCGC | 5 cut(s) | 9, 44, 337, 543, 754 |
| AclWI | GGATC | 2 cut(s) | 593, 666 |
| AcoI | YGGCCR | 2 cut(s) | 41, 189 |
| AcsI | RAATTY | 1 cut(s) | 1075 |
| AcyI | GRCGYC | 2 cut(s) | 5, 941 |
| AfaI | GTAC | 1 cut(s) | 758 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 59, 409 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 220 |
| AjnI | CCWGG | 2 cut(s) | 581, 899 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1160, 1192 |
| Alw21I | GWGCWC | 2 cut(s) | 330, 354 |
| Alw26I | GTCTC | 4 cut(s) | 698, 932, 1002, 1301 |
| AlwI | GGATC | 2 cut(s) | 593, 666 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 832, 1013 |
| Ama87I | CYCGRG | 1 cut(s) | 917 |
| AoxI | GGCC | 7 cut(s) | 41, 189, 458, 619, 769, 977, 1293 |
| ApeKI | GCWGC | 3 cut(s) | 46, 719, 1114 |
| ApoI | RAATTY | 1 cut(s) | 1075 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1019, 1051 |
| AspLEI | GCGC | 1 cut(s) | 1054 |
| AspS9I | GGNCC | 4 cut(s) | 459, 619, 861, 1135 |
| AsuHPI | GGTGA | 1 cut(s) | 177 |
| AvaI | CYCGRG | 1 cut(s) | 917 |
| AvaII | GGWCC | 2 cut(s) | 861, 1135 |
| AxyI | CCTNAGG | 1 cut(s) | 1203 |
| BanI | GGYRCC | 1 cut(s) | 665 |
| BanII | GRGCYC | 3 cut(s) | 330, 354, 918 |
| BauI | CACGAG | 1 cut(s) | 773 |
| Bbv12I | GWGCWC | 2 cut(s) | 330, 354 |
| BbvI | GCAGC | 3 cut(s) | 58, 731, 1126 |
| BccI | CCATC | 6 cut(s) | 243, 436, 649, 1207, 1259, 1349 |
| BceAI | ACGGC | 4 cut(s) | 176, 473, 493, 1280 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 975, 1009 |
| BciT130I | CCWGG | 2 cut(s) | 583, 901 |
| BcoDI | GTCTC | 4 cut(s) | 698, 932, 1002, 1301 |
| BfuAI | ACCTGC | 2 cut(s) | 538, 1210 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 976 |
| BisI | GCNGC | 4 cut(s) | 44, 47, 720, 1115 |
| BlsI | GCNGC | 4 cut(s) | 45, 48, 721, 1116 |
| Bme1390I | CCNGG | 2 cut(s) | 583, 901 |
| Bme18I | GGWCC | 2 cut(s) | 861, 1135 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 220 |
| BmeT110I | CYCGRG | 1 cut(s) | 917 |
| BmgT120I | GGNCC | 4 cut(s) | 459, 619, 861, 1135 |
| BmiI | GGNNCC | 4 cut(s) | 67, 667, 905, 1137 |
| BmrFI | CCNGG | 2 cut(s) | 583, 901 |
| BmsI | GCATC | 1 cut(s) | 215 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1186, 1218 |
| Bpu10I | CCTNAGC | 1 cut(s) | 966 |
| BpuEI | CTTGAG | 2 cut(s) | 314, 356 |
| Bsa29I | ATCGAT | 1 cut(s) | 1327 |
| BsaHI | GRCGYC | 2 cut(s) | 5, 941 |
| BsaI | GGTCTC | 2 cut(s) | 698, 1301 |
| BsaJI | CCNNGG | 2 cut(s) | 687, 766 |
| BsaWI | WCCGGW | 2 cut(s) | 24, 858 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 59, 409 |
| Bse118I | RCCGGY | 4 cut(s) | 187, 389, 466, 970 |
| Bse1I | ACTGG | 1 cut(s) | 599 |
| Bse21I | CCTNAGG | 1 cut(s) | 1203 |
| BseBI | CCWGG | 2 cut(s) | 583, 901 |
| BseCI | ATCGAT | 1 cut(s) | 1327 |
| BseDI | CCNNGG | 2 cut(s) | 687, 766 |
| BseGI | GGATG | 3 cut(s) | 163, 1270, 1276 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 59, 409 |
| BseMII | CTCAG | 3 cut(s) | 212, 957, 1217 |
| BseNI | ACTGG | 1 cut(s) | 599 |
| BseRI | GAGGAG | 5 cut(s) | 78, 93, 332, 830, 1178 |
| BseX3I | CGGCCG | 1 cut(s) | 189 |
| BseXI | GCAGC | 3 cut(s) | 58, 731, 1126 |
| BseYI | CCCAGC | 1 cut(s) | 446 |
| BsgI | GTGCAG | 1 cut(s) | 1247 |
| Bsh1236I | CGCG | 2 cut(s) | 299, 366 |
| Bsh1285I | CGRYCG | 6 cut(s) | 192, 245, 429, 471, 995, 1331 |
| BshFI | GGCC | 7 cut(s) | 43, 191, 460, 621, 771, 979, 1295 |
| BshNI | GGYRCC | 1 cut(s) | 665 |
| BshVI | ATCGAT | 1 cut(s) | 1327 |
| BsiEI | CGRYCG | 6 cut(s) | 192, 245, 429, 471, 995, 1331 |
| BsiHKAI | GWGCWC | 2 cut(s) | 330, 354 |
| BsiHKCI | CYCGRG | 1 cut(s) | 917 |
| BsiSI | CCGG | 8 cut(s) | 25, 69, 188, 390, 467, 859, 971, 983 |
| BslFI | GGGAC | 1 cut(s) | 83 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 59, 409 |
| BsmAI | GTCTC | 4 cut(s) | 698, 932, 1002, 1301 |
| BsmBI | CGTCTC | 2 cut(s) | 932, 1002 |
| BsmFI | GGGAC | 1 cut(s) | 83 |
| BsmI | GAATGC | 2 cut(s) | 751, 1054 |
| BsnI | GGCC | 7 cut(s) | 43, 191, 460, 621, 771, 979, 1295 |
| Bso31I | GGTCTC | 2 cut(s) | 698, 1301 |
| BsoBI | CYCGRG | 1 cut(s) | 917 |
| Bsp1286I | GDGCHC | 3 cut(s) | 330, 354, 918 |
| Bsp143I | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| Bsp68I | TCGCGA | 1 cut(s) | 299 |
| BspACI | CCGC | 5 cut(s) | 9, 44, 337, 543, 754 |
| BspANI | GGCC | 7 cut(s) | 43, 191, 460, 621, 771, 979, 1295 |
| BspCNI | CTCAG | 3 cut(s) | 211, 958, 1216 |
| BspDI | ATCGAT | 1 cut(s) | 1327 |
| BspFNI | CGCG | 2 cut(s) | 299, 366 |
| BspLI | GGNNCC | 4 cut(s) | 67, 667, 905, 1137 |
| BspMI | ACCTGC | 2 cut(s) | 538, 1210 |
| BspPI | GGATC | 2 cut(s) | 593, 666 |
| BspT107I | GGYRCC | 1 cut(s) | 665 |
| BspTNI | GGTCTC | 2 cut(s) | 698, 1301 |
| BsrFI | RCCGGY | 4 cut(s) | 187, 389, 466, 970 |
| BsrI | ACTGG | 1 cut(s) | 599 |
| BssAI | RCCGGY | 4 cut(s) | 187, 389, 466, 970 |
| BssECI | CCNNGG | 2 cut(s) | 687, 766 |
| BssMI | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| BssNI | GRCGYC | 2 cut(s) | 5, 941 |
| BssSI | CACGAG | 1 cut(s) | 773 |
| BssT1I | CCWWGG | 2 cut(s) | 687, 766 |
| Bst2BI | CACGAG | 1 cut(s) | 773 |
| Bst2UI | CCWGG | 2 cut(s) | 583, 901 |
| Bst4CI | ACNGT | 3 cut(s) | 125, 670, 1083 |
| Bst6I | CTCTTC | 1 cut(s) | 1235 |
| BstACI | GRCGYC | 2 cut(s) | 5, 941 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1198, 1225 |
| BstC8I | GCNNGC | 4 cut(s) | 301, 391, 545, 891 |
| BstDEI | CTNAG | 5 cut(s) | 16, 198, 405, 966, 1203 |
| BstF5I | GGATG | 3 cut(s) | 163, 1270, 1276 |
| BstFNI | CGCG | 2 cut(s) | 299, 366 |
| BstHHI | GCGC | 1 cut(s) | 1054 |
| BstKTI | GATC | 8 cut(s) | 228, 245, 429, 588, 661, 995, 1327, 1331 |
| BstMAI | GTCTC | 4 cut(s) | 698, 932, 1002, 1301 |
| BstMBI | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| BstMCI | CGRYCG | 6 cut(s) | 192, 245, 429, 471, 995, 1331 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258 |
| BstNI | CCWGG | 2 cut(s) | 583, 901 |
| BstSCI | CCNGG | 2 cut(s) | 581, 899 |
| BstUI | CGCG | 2 cut(s) | 299, 366 |
| BstV1I | GCAGC | 3 cut(s) | 58, 731, 1126 |
| BstX2I | RGATCY | 2 cut(s) | 585, 658 |
| BstYI | RGATCY | 2 cut(s) | 585, 658 |
| BstZI | CGGCCG | 1 cut(s) | 189 |
| Bsu15I | ATCGAT | 1 cut(s) | 1327 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1203 |
| BsuRI | GGCC | 7 cut(s) | 43, 191, 460, 621, 771, 979, 1295 |
| BsuTUI | ATCGAT | 1 cut(s) | 1327 |
| BtgZI | GCGATG | 1 cut(s) | 280 |
| BtsCI | GGATG | 3 cut(s) | 163, 1270, 1276 |
| BtuMI | TCGCGA | 1 cut(s) | 299 |
| BveI | ACCTGC | 2 cut(s) | 538, 1210 |
| Cac8I | GCNNGC | 4 cut(s) | 301, 391, 545, 891 |
| CaiI | CAGNNNCTG | 2 cut(s) | 832, 1013 |
| CfoI | GCGC | 1 cut(s) | 1054 |
| Cfr10I | RCCGGY | 4 cut(s) | 187, 389, 466, 970 |
| Cfr13I | GGNCC | 4 cut(s) | 459, 619, 861, 1135 |
| ClaI | ATCGAT | 1 cut(s) | 1327 |
| CpoI | CGGWCCG | 1 cut(s) | 861 |
| CseI | GACGC | 2 cut(s) | 224, 949 |
| Csp6I | GTAC | 1 cut(s) | 757 |
| CspI | CGGWCCG | 1 cut(s) | 861 |
| CviAII | CATG | 3 cut(s) | 88, 751, 908 |
| CviQI | GTAC | 1 cut(s) | 757 |
| DdeI | CTNAG | 5 cut(s) | 16, 198, 405, 966, 1203 |
| DpnI | GATC | 8 cut(s) | 227, 244, 428, 587, 660, 994, 1326, 1330 |
| DpnII | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| DriI | GACNNNNNGTC | 1 cut(s) | 220 |
| EaeI | YGGCCR | 2 cut(s) | 41, 189 |
| EagI | CGGCCG | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 1 cut(s) | 1235 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 220 |
| EarI | CTCTTC | 1 cut(s) | 1235 |
| Ecl136II | GAGCTC | 2 cut(s) | 328, 352 |
| EclXI | CGGCCG | 1 cut(s) | 189 |
| Eco130I | CCWWGG | 2 cut(s) | 687, 766 |
| Eco24I | GRGCYC | 3 cut(s) | 330, 354, 918 |
| Eco31I | GGTCTC | 2 cut(s) | 698, 1301 |
| Eco47I | GGWCC | 2 cut(s) | 861, 1135 |
| Eco52I | CGGCCG | 1 cut(s) | 189 |
| Eco53kI | GAGCTC | 2 cut(s) | 328, 352 |
| Eco81I | CCTNAGG | 1 cut(s) | 1203 |
| Eco88I | CYCGRG | 1 cut(s) | 917 |
| EcoICRI | GAGCTC | 2 cut(s) | 328, 352 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1135 |
| EcoRI | GAATTC | 1 cut(s) | 1075 |
| EcoRII | CCWGG | 2 cut(s) | 581, 899 |
| EcoT14I | CCWWGG | 2 cut(s) | 687, 766 |
| EcoT38I | GRGCYC | 3 cut(s) | 330, 354, 918 |
| ErhI | CCWWGG | 2 cut(s) | 687, 766 |
| Esp3I | CGTCTC | 2 cut(s) | 932, 1002 |
| FaeI | CATG | 3 cut(s) | 91, 754, 911 |
| FaiI | YATR | 8 cut(s) | 89, 417, 579, 752, 909, 1154, 1160, 1235 |
| FaqI | GGGAC | 1 cut(s) | 83 |
| FatI | CATG | 3 cut(s) | 87, 750, 907 |
| FauI | CCCGC | 1 cut(s) | 536 |
| FblI | GTMKAC | 1 cut(s) | 780 |
| Fnu4HI | GCNGC | 4 cut(s) | 44, 47, 720, 1115 |
| FokI | GGATG | 3 cut(s) | 150, 1277, 1283 |
| FriOI | GRGCYC | 3 cut(s) | 330, 354, 918 |
| Fsp4HI | GCNGC | 4 cut(s) | 44, 47, 720, 1115 |
| GlaI | GCGC | 1 cut(s) | 1053 |
| GluI | GCNGC | 4 cut(s) | 44, 47, 720, 1115 |
| GsaI | CCCAGC | 1 cut(s) | 450 |
| HaeIII | GGCC | 7 cut(s) | 43, 191, 460, 621, 771, 979, 1295 |
| HapII | CCGG | 8 cut(s) | 25, 69, 188, 390, 467, 859, 971, 983 |
| HgaI | GACGC | 2 cut(s) | 224, 949 |
| HhaI | GCGC | 1 cut(s) | 1054 |
| Hin1I | GRCGYC | 2 cut(s) | 5, 941 |
| Hin1II | CATG | 3 cut(s) | 91, 754, 911 |
| Hin6I | GCGC | 1 cut(s) | 1052 |
| HinP1I | GCGC | 1 cut(s) | 1052 |
| HinfI | GANTC | 4 cut(s) | 84, 182, 361, 485 |
| HpaII | CCGG | 8 cut(s) | 25, 69, 188, 390, 467, 859, 971, 983 |
| HphI | GGTGA | 1 cut(s) | 177 |
| Hpy166II | GTNNAC | 2 cut(s) | 271, 781 |
| Hpy188I | TCNGA | 7 cut(s) | 201, 211, 712, 834, 865, 877, 951 |
| Hpy8I | GTNNAC | 2 cut(s) | 271, 781 |
| Hpy99I | CGWCG | 3 cut(s) | 226, 260, 1036 |
| HpyAV | CCTTC | 4 cut(s) | 632, 717, 1081, 1126 |
| HpyCH4III | ACNGT | 3 cut(s) | 125, 670, 1083 |
| HpyCH4IV | ACGT | 2 cut(s) | 258, 282 |
| HpyCH4V | TGCA | 5 cut(s) | 206, 719, 889, 1192, 1228 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258 |
| HpyF3I | CTNAG | 5 cut(s) | 16, 198, 405, 966, 1203 |
| HpySE526I | ACGT | 2 cut(s) | 258, 282 |
| Hsp92I | GRCGYC | 2 cut(s) | 5, 941 |
| Hsp92II | CATG | 3 cut(s) | 91, 754, 911 |
| HspAI | GCGC | 1 cut(s) | 1052 |
| KroI | GCCGGC | 1 cut(s) | 389 |
| KroNI | GCCGGC | 1 cut(s) | 391 |
| Kzo9I | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| LmnI | GCTCC | 5 cut(s) | 65, 71, 1015, 1216, 1318 |
| Lsp1109I | GCAGC | 3 cut(s) | 58, 731, 1126 |
| LweI | GCATC | 1 cut(s) | 215 |
| MaeII | ACGT | 2 cut(s) | 258, 282 |
| MaeIII | GTNAC | 4 cut(s) | 125, 183, 193, 1337 |
| MalI | GATC | 8 cut(s) | 227, 244, 428, 587, 660, 994, 1326, 1330 |
| MboI | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| MfeI | CAATTG | 1 cut(s) | 37 |
| MflI | RGATCY | 2 cut(s) | 585, 658 |
| MhlI | GDGCHC | 3 cut(s) | 330, 354, 918 |
| MlyI | GAGTC | 1 cut(s) | 191 |
| MroNI | GCCGGC | 1 cut(s) | 389 |
| MslI | CAYNNNNRTG | 1 cut(s) | 849 |
| MspA1I | CMGCKG | 1 cut(s) | 722 |
| MspI | CCGG | 8 cut(s) | 25, 69, 188, 390, 467, 859, 971, 983 |
| MspR9I | CCNGG | 2 cut(s) | 583, 901 |
| MunI | CAATTG | 1 cut(s) | 37 |
| Mva1269I | GAATGC | 2 cut(s) | 751, 1054 |
| MvaI | CCWGG | 2 cut(s) | 583, 901 |
| MvnI | CGCG | 2 cut(s) | 299, 366 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 17, 325, 568, 976, 1111, 1120, 1198, 1225, 1258 |
| NaeI | GCCGGC | 1 cut(s) | 391 |
| NdeII | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| NgoMIV | GCCGGC | 1 cut(s) | 389 |
| NlaIII | CATG | 3 cut(s) | 91, 754, 911 |
| NlaIV | GGNNCC | 4 cut(s) | 67, 667, 905, 1137 |
| NmeAIII | GCCGAG | 1 cut(s) | 642 |
| NmuCI | GTSAC | 3 cut(s) | 183, 193, 1337 |
| NruI | TCGCGA | 1 cut(s) | 299 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 264, 633 |
| PctI | GAATGC | 2 cut(s) | 751, 1054 |
| PdiI | GCCGGC | 1 cut(s) | 391 |
| PfeI | GAWTC | 3 cut(s) | 84, 361, 485 |
| PfoI | TCCNGGA | 1 cut(s) | 899 |
| PkrI | GCNGC | 4 cut(s) | 45, 48, 721, 1116 |
| Ple19I | CGATCG | 4 cut(s) | 245, 429, 995, 1331 |
| PleI | GAGTC | 1 cut(s) | 190 |
| PpsI | GAGTC | 1 cut(s) | 190 |
| PpuMI | RGGWCCY | 1 cut(s) | 1135 |
| PsiI | TTATAA | 1 cut(s) | 1235 |
| Psp124BI | GAGCTC | 2 cut(s) | 330, 354 |
| Psp5II | RGGWCCY | 1 cut(s) | 1135 |
| Psp6I | CCWGG | 2 cut(s) | 581, 899 |
| PspFI | CCCAGC | 1 cut(s) | 446 |
| PspGI | CCWGG | 2 cut(s) | 581, 899 |
| PspN4I | GGNNCC | 4 cut(s) | 67, 667, 905, 1137 |
| PspPI | GGNCC | 4 cut(s) | 459, 619, 861, 1135 |
| PspPPI | RGGWCCY | 1 cut(s) | 1135 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 252, 284 |
| PstNI | CAGNNNCTG | 2 cut(s) | 832, 1013 |
| PsuI | RGATCY | 2 cut(s) | 585, 658 |
| PvuI | CGATCG | 4 cut(s) | 245, 429, 995, 1331 |
| PvuII | CAGCTG | 1 cut(s) | 722 |
| RruI | TCGCGA | 1 cut(s) | 299 |
| RsaI | GTAC | 1 cut(s) | 758 |
| RsaNI | GTAC | 1 cut(s) | 757 |
| RseI | CAYNNNNRTG | 1 cut(s) | 849 |
| Rsr2I | CGGWCCG | 1 cut(s) | 861 |
| RsrII | CGGWCCG | 1 cut(s) | 861 |
| SacI | GAGCTC | 2 cut(s) | 330, 354 |
| SatI | GCNGC | 4 cut(s) | 44, 47, 720, 1115 |
| Sau3AI | GATC | 8 cut(s) | 225, 242, 426, 585, 658, 992, 1324, 1328 |
| Sau96I | GGNCC | 4 cut(s) | 459, 619, 861, 1135 |
| SchI | GAGTC | 1 cut(s) | 191 |
| ScrFI | CCNGG | 2 cut(s) | 583, 901 |
| SduI | GDGCHC | 3 cut(s) | 330, 354, 918 |
| SfaNI | GCATC | 1 cut(s) | 215 |
| SinI | GGWCC | 2 cut(s) | 861, 1135 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 849 |
| SmlI | CTYRAG | 2 cut(s) | 329, 371 |
| SmoI | CTYRAG | 2 cut(s) | 329, 371 |
| SsiI | CCGC | 5 cut(s) | 9, 44, 337, 543, 754 |
| SstI | GAGCTC | 2 cut(s) | 330, 354 |
| StyD4I | CCNGG | 2 cut(s) | 581, 899 |
| StyI | CCWWGG | 2 cut(s) | 687, 766 |
| TaaI | ACNGT | 3 cut(s) | 125, 670, 1083 |
| TaiI | ACGT | 2 cut(s) | 261, 285 |
| TauI | GCSGC | 1 cut(s) | 46 |
| TfiI | GAWTC | 3 cut(s) | 84, 361, 485 |
| TseFI | GTSAC | 3 cut(s) | 183, 193, 1337 |
| TseI | GCWGC | 3 cut(s) | 46, 719, 1114 |
| Tsp45I | GTSAC | 3 cut(s) | 183, 193, 1337 |
| TspDTI | ATGAA | 5 cut(s) | 76, 149, 548, 581, 1011 |
| TspGWI | ACGGA | 2 cut(s) | 861, 1319 |
| VpaK11BI | GGWCC | 2 cut(s) | 861, 1135 |
| XapI | RAATTY | 1 cut(s) | 1075 |
| XmiI | GTMKAC | 1 cut(s) | 780 |