Rh6CG167900

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
22766942 .. 22770893
3952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG167900.1

Sequence Viewer

Length: 1473 bp
ATGGCGTCCGCCGTCTTAGCGAATCGGAACGAACCCAATTGGCCACAGCAGCCCAGAGGCGGCGGCGGAGGCGGAGGATTCATGGGAAAAGTCCCTTTCTCAAACCCTAACCGTAACAACCCTAACCCTAAGACCAAATTCCAAGCTCATCATCATCATCATGCCGCCGATTTCAATGACGAGTCACCCGCCGTGACCCAGACGGCGTCCGACGACGCTTCGTCGATCAACCACCATCGGCGATCAAACACAACGAACACCGCCGCTGCCGATTTCAACCTCATTCAGTCCCAATACGTCAGCTTCAACGTCGCAACCTATTCAAGAAAAGAGCTCGTCGAGCTCAAGAATCGCCTTCTCTCTGAGCTCGACCAGATTCGTGTGCTCAAGAATCGAATCGAAGCCGGCGACTTCAATCCCAGGCCGGCCCAGCCCAAAAAGCCCAACACCACCAAGAAGATTGCTGGCTCGAAGCGGCCCTTGCCGATCGCCCCCGGCAAGGATTCGAATTCCAATTTGAAGCGATCGCATTCGGAGAATGTCAATTTGATGAAGAATTGTGGGCAGATTTTGTCCAAGCTGATGAAGCACAAGCACGCCTGGATCTTCAAAAAGCCGGTTGATGTGGTGACACTGAAGCTTCATGATTACCATGATATAATCAAGCACCCCATGGATCTGGGCACTGTCAAAATGAATCTATCCAAGAATTTGTATTCGACGCCATTGGAATTTGCTGCTGATGTGCGATTGACCTTTGAAAATGCCATGCGGTATAATCCCCGAGGCCATGATGTCTACAACTACGCCAATCAGCTTCGCTCTTTGTTTGAGGAGCTCTTCCAGCCCCTGATTGACAAATTGGGGGATGGGTTTGGTGGGGATCGAGGAGCTTCCGATGAGGAGGAATTGCAGGCCAGTTCTTGGAACCATGTTGAGCCTGAGAGGCATCCTCCTCCTCCGCCCAGGAGGGAAGACCCAATGCCCATGAAGATCGATAAGAAGACTGAGGTGGTTCGGCCCCCTCCGGCTTCAACCCCAGCTCCAGTCCCAGCCCCAGTGAGCTCATCAAATCCACCATTAGCTAATTCTCCAGTGAGGACAAGTTCGCAAGTGAAGGGGCCGCCGCAAGTGAAGCCCTTGAAGCAGCCGAAGCCAAAAGCAAAGGACCCAAACAAGAGGGATATGAGCATGGAGGAGAAGCATAAGCTGGGACTTGGGTTGCAGAGCTTGCCTCAGGAGAAAATGGAGCAAGTTGTGCAGATTATTAGAAAGAGGAATGGGCATTTAAAGCAGGATGGGGATGAGATTGAGCTTGACATTGAGGCTGTAGATACAGAAACCCTTTGGGAGCTTGATCGGCTTGTTACAAATTACAAAAAGATGGTTAGCAAGATTAAGCGTCAAGCACTGATGGGCAACAACAGCAATAGCAACATTGCTTCGAACAGAGGAGGTCAAGAGGTAAATTAG

Protein Analysis

490

Amino Acids

54.85

Weight (kDa)

9.58

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 187 - 271 1.3e-21 Bromodomain
BET PF17035 396 - 457 9.3e-22 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 924
AccI GTMKAC 1 cut(s) 798
AclWI GGATC 3 cut(s) 611, 684, 891
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 4 cut(s) 137, 508, 709, 731
AcuI CTGAAG 1 cut(s) 656
AcyI GRCGYC 3 cut(s) 5, 206, 722
AfiI CCNNNNNNNGG 3 cut(s) 59, 499, 924
AhdI GACNNNNNGTC 1 cut(s) 220
AjnI CCWGG 3 cut(s) 419, 599, 965
Alw21I GWGCWC 6 cut(s) 336, 345, 369, 387, 840, 1067
AlwI GGATC 3 cut(s) 611, 684, 891
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 783
AoxI GGCC 8 cut(s) 41, 422, 426, 476, 787, 915, 1019, 1121
ApeKI GCWGC 4 cut(s) 49, 266, 737, 1147
ApoI RAATTY 4 cut(s) 137, 508, 709, 731
AsiSI GCGATCGC 1 cut(s) 527
AspS9I GGNCC 5 cut(s) 427, 477, 1020, 1121, 1168
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 2 cut(s) 177, 640
AsuII TTCGAA 2 cut(s) 506, 1445
AvaI CYCGRG 1 cut(s) 783
AvaII GGWCC 1 cut(s) 1168
AxyI CCTNAGG 1 cut(s) 1236
BaeGI GKGCMC 1 cut(s) 686
BalI TGGCCA 1 cut(s) 43
BanII GRGCYC 5 cut(s) 336, 345, 369, 840, 1067
BbsI GAAGAC 2 cut(s) 981, 1010
Bbv12I GWGCWC 6 cut(s) 336, 345, 369, 387, 840, 1067
BbvI GCAGC 4 cut(s) 61, 253, 724, 1159
BccI CCATC 5 cut(s) 243, 863, 1292, 1378, 1408
BceAI ACGGC 2 cut(s) 176, 219
BciT130I CCWGG 3 cut(s) 421, 601, 967
BcnI CCSGG 1 cut(s) 495
BfmI CTRYAG 1 cut(s) 1329
BglI GCCNNNNNGGC 1 cut(s) 946
Bme1390I CCNGG 4 cut(s) 421, 495, 601, 967
Bme18I GGWCC 1 cut(s) 1168
BmeRI GACNNNNNGTC 1 cut(s) 220
BmeT110I CYCGRG 1 cut(s) 783
BmgT120I GGNCC 5 cut(s) 427, 477, 1020, 1121, 1168
BmiI GGNNCC 4 cut(s) 929, 1022, 1122, 1170
BmrFI CCNGG 4 cut(s) 421, 495, 601, 967
BmrI ACTGGG 1 cut(s) 1052
BmsI GCATC 1 cut(s) 958
BmuI ACTGGG 1 cut(s) 1052
BpiI GAAGAC 2 cut(s) 981, 1010
BplI GAGNNNNNCTC 4 cut(s) 937, 969, 1219, 1251
BpmI CTGGAG 2 cut(s) 1029, 1077
Bpu14I TTCGAA 2 cut(s) 506, 1445
BpuEI CTTGAG 2 cut(s) 329, 371
BpuMI CCSGG 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 996
BsaHI GRCGYC 3 cut(s) 5, 206, 722
BsaJI CCNNGG 5 cut(s) 419, 493, 672, 784, 965
BsaXI ACNNNNNCTCC 2 cut(s) 1027, 1057
Bsc4I CCNNNNNNNGG 3 cut(s) 59, 499, 924
Bse118I RCCGGY 3 cut(s) 404, 424, 616
Bse1I ACTGG 4 cut(s) 918, 1046, 1058, 1094
Bse21I CCTNAGG 1 cut(s) 1236
Bse3DI GCAATG 1 cut(s) 1437
BseBI CCWGG 3 cut(s) 421, 601, 967
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 5 cut(s) 419, 493, 672, 784, 965
BseGI GGATG 4 cut(s) 874, 949, 1303, 1309
BseLI CCNNNNNNNGG 3 cut(s) 59, 499, 924
BseMI GCAATG 1 cut(s) 1437
BseMII CTCAG 4 cut(s) 354, 933, 999, 1250
BseNI ACTGG 4 cut(s) 918, 1046, 1058, 1094
BseRI GAGGAG 7 cut(s) 848, 903, 917, 945, 948, 1211, 1467
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 4 cut(s) 61, 253, 724, 1159
BseYI CCCAGC 4 cut(s) 429, 1039, 1051, 1210
BsgI GTGCAG 1 cut(s) 1280
Bsh1285I CGRYCG 2 cut(s) 489, 527
BshFI GGCC 8 cut(s) 43, 424, 428, 478, 789, 917, 1021, 1123
BshVI ATCGAT 1 cut(s) 996
BsiEI CGRYCG 2 cut(s) 489, 527
BsiHKAI GWGCWC 6 cut(s) 336, 345, 369, 387, 840, 1067
BsiHKCI CYCGRG 1 cut(s) 783
BsiSI CCGG 5 cut(s) 405, 425, 495, 617, 1028
BslFI GGGAC 4 cut(s) 77, 274, 1034, 1227
BslI CCNNNNNNNGG 3 cut(s) 59, 499, 924
BsmFI GGGAC 4 cut(s) 77, 274, 1034, 1227
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 8 cut(s) 43, 424, 428, 478, 789, 917, 1021, 1123
BsoBI CYCGRG 1 cut(s) 783
Bsp119I TTCGAA 2 cut(s) 506, 1445
Bsp1286I GDGCHC 7 cut(s) 336, 345, 369, 387, 686, 840, 1067
Bsp143I GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
Bsp19I CCATGG 1 cut(s) 672
BspANI GGCC 8 cut(s) 43, 424, 428, 478, 789, 917, 1021, 1123
BspCNI CTCAG 4 cut(s) 355, 934, 1000, 1249
BspDI ATCGAT 1 cut(s) 996
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 4 cut(s) 929, 1022, 1122, 1170
BspPI GGATC 3 cut(s) 611, 684, 891
BspQI GCTCTTC 1 cut(s) 845
BspT104I TTCGAA 2 cut(s) 506, 1445
BsrDI GCAATG 1 cut(s) 1437
BsrFI RCCGGY 3 cut(s) 404, 424, 616
BsrI ACTGG 4 cut(s) 918, 1046, 1058, 1094
BssAI RCCGGY 3 cut(s) 404, 424, 616
BssECI CCNNGG 5 cut(s) 419, 493, 672, 784, 965
BssMI GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
BssNI GRCGYC 3 cut(s) 5, 206, 722
BssT1I CCWWGG 1 cut(s) 672
Bst2UI CCWGG 3 cut(s) 421, 601, 967
Bst4CI ACNGT 2 cut(s) 113, 688
Bst6I CTCTTC 1 cut(s) 845
BstACI GRCGYC 3 cut(s) 5, 206, 722
BstAPI GCANNNNNTGC 2 cut(s) 1231, 1258
BstBI TTCGAA 2 cut(s) 506, 1445
BstC8I GCNNGC 6 cut(s) 406, 426, 466, 597, 915, 1232
BstDEI CTNAG 6 cut(s) 16, 129, 363, 942, 1008, 1236
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 4 cut(s) 874, 949, 1303, 1309
BstKTI GATC 9 cut(s) 228, 245, 489, 527, 606, 679, 886, 996, 1360
BstMBI GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
BstMCI CGRYCG 2 cut(s) 489, 527
BstNI CCWGG 3 cut(s) 421, 601, 967
BstSCI CCNGG 4 cut(s) 419, 493, 599, 965
BstSFI CTRYAG 1 cut(s) 1329
BstSLI GKGCMC 1 cut(s) 686
BstV1I GCAGC 4 cut(s) 61, 253, 724, 1159
BstV2I GAAGAC 2 cut(s) 981, 1010
BstX2I RGATCY 2 cut(s) 603, 676
BstXI CCANNNNNNTGG 1 cut(s) 679
BstYI RGATCY 2 cut(s) 603, 676
Bsu15I ATCGAT 1 cut(s) 996
Bsu36I CCTNAGG 1 cut(s) 1236
BsuRI GGCC 8 cut(s) 43, 424, 428, 478, 789, 917, 1021, 1123
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 4 cut(s) 874, 949, 1303, 1309
BtsIMutI CAGTG 5 cut(s) 632, 684, 1065, 1101, 1409
Cac8I GCNNGC 6 cut(s) 406, 426, 466, 597, 915, 1232
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 1 cut(s) 643
Cfr10I RCCGGY 3 cut(s) 404, 424, 616
Cfr13I GGNCC 5 cut(s) 427, 477, 1020, 1121, 1168
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 4 cut(s) 195, 224, 730, 1391
DdeI CTNAG 6 cut(s) 16, 129, 363, 942, 1008, 1236
DpnI GATC 9 cut(s) 227, 244, 488, 526, 605, 678, 885, 995, 1359
DpnII GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
DraI TTTAAA 1 cut(s) 1290
DriI GACNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 41
Eam1104I CTCTTC 1 cut(s) 845
Eam1105I GACNNNNNGTC 1 cut(s) 220
EarI CTCTTC 1 cut(s) 845
EciI GGCGGA 3 cut(s) 81, 87, 951
Ecl136II GAGCTC 5 cut(s) 334, 343, 367, 838, 1065
Eco130I CCWWGG 1 cut(s) 672
Eco24I GRGCYC 5 cut(s) 336, 345, 369, 840, 1067
Eco47I GGWCC 1 cut(s) 1168
Eco53kI GAGCTC 5 cut(s) 334, 343, 367, 838, 1065
Eco57I CTGAAG 1 cut(s) 656
Eco81I CCTNAGG 1 cut(s) 1236
Eco88I CYCGRG 1 cut(s) 783
EcoICRI GAGCTC 5 cut(s) 334, 343, 367, 838, 1065
EcoO109I RGGNCCY 1 cut(s) 1168
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 419, 599, 965
EcoT14I CCWWGG 1 cut(s) 672
EcoT38I GRGCYC 5 cut(s) 336, 345, 369, 840, 1067
ErhI CCWWGG 1 cut(s) 672
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 4 cut(s) 77, 274, 1034, 1227
FauI CCCGC 1 cut(s) 196
FblI GTMKAC 1 cut(s) 798
FokI GGATG 4 cut(s) 881, 936, 1310, 1316
FriOI GRGCYC 5 cut(s) 336, 345, 369, 840, 1067
FseI GGCCGGCC 1 cut(s) 428
GsaI CCCAGC 4 cut(s) 433, 1043, 1055, 1214
GsuI CTGGAG 2 cut(s) 1029, 1077
HaeIII GGCC 8 cut(s) 43, 424, 428, 478, 789, 917, 1021, 1123
HapII CCGG 5 cut(s) 405, 425, 495, 617, 1028
HgaI GACGC 4 cut(s) 195, 224, 730, 1391
Hin1I GRCGYC 3 cut(s) 5, 206, 722
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 9 cut(s) 22, 78, 182, 349, 376, 391, 396, 503, 697
HpaII CCGG 5 cut(s) 405, 425, 495, 617, 1028
HphI GGTGA 2 cut(s) 177, 640
Hpy166II GTNNAC 1 cut(s) 799
Hpy188I TCNGA 5 cut(s) 27, 211, 364, 535, 898
Hpy188III TCNNGA 6 cut(s) 324, 346, 388, 644, 1238, 1460
Hpy8I GTNNAC 1 cut(s) 799
Hpy99I CGWCG 6 cut(s) 215, 218, 226, 314, 341, 724
HpyAV CCTTC 2 cut(s) 365, 1111
HpyCH4III ACNGT 2 cut(s) 113, 688
HpyCH4IV ACGT 2 cut(s) 297, 309
HpyCH4V TGCA 3 cut(s) 913, 1225, 1261
HpyF3I CTNAG 6 cut(s) 16, 129, 363, 942, 1008, 1236
HpySE526I ACGT 2 cut(s) 297, 309
Hsp92I GRCGYC 3 cut(s) 5, 206, 722
KroI GCCGGC 2 cut(s) 404, 424
KroNI GCCGGC 2 cut(s) 406, 426
Kzo9I GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
LguI GCTCTTC 1 cut(s) 845
LmnI GCTCC 5 cut(s) 835, 890, 1048, 1249, 1351
Lsp1109I GCAGC 4 cut(s) 61, 253, 724, 1159
LweI GCATC 1 cut(s) 958
MaeII ACGT 2 cut(s) 297, 309
MaeIII GTNAC 5 cut(s) 113, 183, 193, 628, 1366
MalI GATC 9 cut(s) 227, 244, 488, 526, 605, 678, 885, 995, 1359
MboI GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
MboII GAAGA 7 cut(s) 469, 565, 598, 832, 986, 1003, 1015
MfeI CAATTG 1 cut(s) 37
MflI RGATCY 2 cut(s) 603, 676
MhlI GDGCHC 7 cut(s) 336, 345, 369, 387, 686, 840, 1067
MlsI TGGCCA 1 cut(s) 43
MluNI TGGCCA 1 cut(s) 43
MlyI GAGTC 1 cut(s) 191
MmeI TCCRAC 1 cut(s) 234
Mox20I TGGCCA 1 cut(s) 43
MroNI GCCGGC 2 cut(s) 404, 424
MscI TGGCCA 1 cut(s) 43
MseI TTAA 2 cut(s) 1289, 1398
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 43
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 5 cut(s) 405, 425, 495, 617, 1028
MspR9I CCNGG 4 cut(s) 421, 495, 601, 967
MunI CAATTG 1 cut(s) 37
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 3 cut(s) 421, 601, 967
NaeI GCCGGC 2 cut(s) 406, 426
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 1 cut(s) 672
NdeII GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
NgoMIV GCCGGC 2 cut(s) 404, 424
NlaIV GGNNCC 4 cut(s) 929, 1022, 1122, 1170
NmuCI GTSAC 3 cut(s) 183, 193, 628
NspV TTCGAA 2 cut(s) 506, 1445
PagI TCATGA 1 cut(s) 643
PciSI GCTCTTC 1 cut(s) 845
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PctI GAATGC 1 cut(s) 529
PdiI GCCGGC 2 cut(s) 406, 426
PfeI GAWTC 8 cut(s) 22, 78, 349, 376, 391, 396, 503, 697
PflFI GACNNNGTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 924
Ple19I CGATCG 2 cut(s) 489, 527
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 1168
Psp124BI GAGCTC 5 cut(s) 336, 345, 369, 840, 1067
Psp5II RGGWCCY 1 cut(s) 1168
Psp6I CCWGG 3 cut(s) 419, 599, 965
PspFI CCCAGC 4 cut(s) 429, 1039, 1051, 1210
PspGI CCWGG 3 cut(s) 419, 599, 965
PspN4I GGNNCC 4 cut(s) 929, 1022, 1122, 1170
PspPI GGNCC 5 cut(s) 427, 477, 1020, 1121, 1168
PspPPI RGGWCCY 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 850
PsuI RGATCY 2 cut(s) 603, 676
PsyI GACNNNGTC 1 cut(s) 205
PvuI CGATCG 2 cut(s) 489, 527
RgaI GCGATCGC 1 cut(s) 527
RigI GGCCGGCC 1 cut(s) 428
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 5 cut(s) 336, 345, 369, 840, 1067
SapI GCTCTTC 1 cut(s) 845
SaqAI TTAA 2 cut(s) 1289, 1398
Sau3AI GATC 9 cut(s) 225, 242, 486, 524, 603, 676, 883, 993, 1357
Sau96I GGNCC 5 cut(s) 427, 477, 1020, 1121, 1168
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 421, 495, 601, 967
SduI GDGCHC 7 cut(s) 336, 345, 369, 387, 686, 840, 1067
SfaAI GCGATCGC 1 cut(s) 527
SfaNI GCATC 1 cut(s) 958
SfcI CTRYAG 1 cut(s) 1329
SfuI TTCGAA 2 cut(s) 506, 1445
SgfI GCGATCGC 1 cut(s) 527
SinI GGWCC 1 cut(s) 1168
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 2 cut(s) 344, 386
SmoI CTYRAG 2 cut(s) 344, 386
SstI GAGCTC 5 cut(s) 336, 345, 369, 840, 1067
StyD4I CCNGG 4 cut(s) 419, 493, 599, 965
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 2 cut(s) 113, 688
TaiI ACGT 2 cut(s) 300, 312
TauI GCSGC 7 cut(s) 63, 66, 167, 266, 478, 1126, 1129
TfiI GAWTC 8 cut(s) 22, 78, 349, 376, 391, 396, 503, 697
Tru1I TTAA 2 cut(s) 1289, 1398
Tru9I TTAA 2 cut(s) 1289, 1398
TscAI CASTG 5 cut(s) 639, 691, 1065, 1101, 1416
TseFI GTSAC 3 cut(s) 183, 193, 628
TseI GCWGC 4 cut(s) 49, 266, 737, 1147
Tsp45I GTSAC 3 cut(s) 183, 193, 628
TspDTI ATGAA 6 cut(s) 70, 566, 599, 632, 710, 1004
TspRI CASTG 5 cut(s) 639, 691, 1065, 1101, 1416
Tth111I GACNNNGTC 1 cut(s) 205
Van91I CCANNNNNTGG 1 cut(s) 924
VpaK11BI GGWCC 1 cut(s) 1168
XapI RAATTY 4 cut(s) 137, 508, 709, 731
XmiI GTMKAC 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.