Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012663

Physical Location & Seq

Genomic Coordinates Forward (+)

15664430 .. 15666512

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1074300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATCAACGAAAGCCAAATTTGATTACATCAATCTCTACTTTTCTCATCGTTCTTCTTCTCTGTGTAGCAAATGAAATCGAGTCGGCACCTACAAATCCAAGCAAGCAGCAGCACTTTGTGTTAGTTCATGGGTCATGCTTCGGTGCTTGGTCTTGGTACAAGCTTGTAACCCTAGTTAGATCATCCGGTCACAACGTCACTGCCCTAGACCTAGCTGCTTCCGGGGTCGACCCACTGCAGGCAAAGAATCTGCGATCGATTTCCGACTACTTGAAGCCCTTGAGGGATTTCATGGAAGCTATTGATGGAAAGGTGATTCTTGTTGGTCACAGTCTTGGTGGGTTGGCCATTTCTCAAGCCATGGAAAGATTTCCAGGTAAGATATCTGTAGCTGTTTTTGTCACTGCCCTGATGCCAGGCCCGGCCCTCAACATTTCCAGCCTTAATAAAGAGTCTTTCAGGAGACAAGATTCTCTATTAGACAGTCGATACACATACGACCAAGGCCCAAGCAATCCTCCGACCACTCTCATATTTGGCCCGTTGTATTTGGTATCAAGAGTGTACCAACTTAGCCCAATTGAGGATGTTGCTTTAGGCAGCATGCTAATGAGACCAATACGTTTGTTCAGTGAAGAGGACTTGTCCAAGAAACTCAAGCTAACCAACGAGAATTACGGGTCGGTCAATCGGGTTTACGTAATATCGGAAGGAGATTTAGTCGGAAAGAAGGACTTTCAACGGTGGATGATCAAGAAAAATCGGCCAAACAATGTGGTGGAAATCACAGGATCTGATCACATGGTCATGATATCCAAGCCATTGGAACTTTGGCTGCATCTCCAAATAATTATTAAAAAGTATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

291

Amino Acids

32.43

Weight (kDa)

9.21

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	37 - 140	4.4e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 147	1.9e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 277	3.7e-20	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012663)

Species	Orthologous Gene IDs
malus_domestica	MD05G1074300.v1.1
prunus_persica	Prupe.8G114700_v2.0.a1 Prupe.8G115000_v2.0.a1 Prupe.8G115300_v2.0.a1
pyrus_communis	pycom05g06700
rosa_chinensis	RchiOBHm_Chr4g0407461 RchiOBHm_Chr6g0259411 RchiOBHm_Chr6g0259431
rosa_laevigata	RLG00000014534
rosa_multiflora	Rmu_sc0006836.1_g000015 Rmu_ssc0000050.1_g000045
rosa_roxburghii	Rroxscaffold_7G00206700
rosa_rugosa	Rorug05G0588800 Rorug06G0097000
rosa_samantha	Rh6AG104500 Rh6BG097700 Rh6CG093600 Rh6DG087500
rosa_wichuraiana	Rw6G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	88
AccI	GTMKAC	2 cut(s)	231, 866
AclWI	GGATC	2 cut(s)	12, 802
AcoI	YGGCCR	2 cut(s)	348, 767
AcsI	RAATTY	1 cut(s)	19
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	161, 569
AfiI	CCNNNNNNNGG	2 cut(s)	241, 586
AgsI	TTSAA	2 cut(s)	277, 743
AjnI	CCWGG	2 cut(s)	376, 418
AluBI	AGCT	5 cut(s)	166, 218, 302, 395, 664
AluI	AGCT	5 cut(s)	166, 218, 302, 395, 664
Alw26I	GTCTC	2 cut(s)	460, 610
AlwI	GGATC	2 cut(s)	12, 802
AlwNI	CAGNNNCTG	1 cut(s)	797
AoxI	GGCC	6 cut(s)	348, 421, 426, 508, 541, 767
ApeKI	GCWGC	5 cut(s)	109, 112, 218, 603, 838
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	372
AspS9I	GGNCC	4 cut(s)	422, 427, 509, 542
AsuC2I	CCSGG	2 cut(s)	226, 425
AsuHPI	GGTGA	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	1 cut(s)	88
BbvI	GCAGC	5 cut(s)	121, 124, 205, 615, 825
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	378, 420
BclI	TGATCA	2 cut(s)	753, 799
BcnI	CCSGG	2 cut(s)	226, 425
BcoDI	GTCTC	2 cut(s)	460, 610
BfaI	CTAG	3 cut(s)	176, 209, 215
BfmI	CTRYAG	2 cut(s)	239, 390
BisI	GCNGC	5 cut(s)	110, 113, 219, 604, 839
BlsI	GCNGC	5 cut(s)	111, 114, 220, 605, 840
Bme1390I	CCNGG	4 cut(s)	226, 378, 420, 425
BmgT120I	GGNCC	4 cut(s)	422, 427, 509, 542
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	4 cut(s)	226, 378, 420, 425
BmsI	GCATC	2 cut(s)	405, 850
BpuEI	CTTGAG	3 cut(s)	304, 342, 644
BpuMI	CCSGG	2 cut(s)	226, 425
Bsa29I	ATCGAT	1 cut(s)	260
BsaAI	YACGTR	1 cut(s)	703
BsaI	GGTCTC	1 cut(s)	610
BsaJI	CCNNGG	3 cut(s)	225, 363, 505
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 586
BseBI	CCWGG	2 cut(s)	378, 420
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	3 cut(s)	225, 363, 505
BseGI	GGATG	3 cut(s)	185, 595, 756
BseLI	CCNNNNNNNGG	2 cut(s)	241, 586
BseXI	GCAGC	5 cut(s)	121, 124, 205, 615, 825
Bsh1285I	CGRYCG	1 cut(s)	260
BshFI	GGCC	6 cut(s)	350, 423, 428, 510, 543, 769
BshNI	GGYRCC	1 cut(s)	88
BshVI	ATCGAT	1 cut(s)	260
BsiEI	CGRYCG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	189, 225, 425
BslI	CCNNNNNNNGG	2 cut(s)	241, 586
BsmAI	GTCTC	2 cut(s)	460, 610
BsnI	GGCC	6 cut(s)	350, 423, 428, 510, 543, 769
Bso31I	GGTCTC	1 cut(s)	610
Bsp143I	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	6 cut(s)	350, 423, 428, 510, 543, 769
BspDI	ATCGAT	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	90
BspMAI	CTGCAG	1 cut(s)	243
BspPI	GGATC	2 cut(s)	12, 802
BspT107I	GGYRCC	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	610
BssECI	CCNNGG	3 cut(s)	225, 363, 505
BssMI	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
BssNAI	GTATAC	1 cut(s)	867
BssT1I	CCWWGG	2 cut(s)	363, 505
Bst1107I	GTATAC	1 cut(s)	867
Bst2UI	CCWGG	2 cut(s)	378, 420
Bst4CI	ACNGT	3 cut(s)	335, 488, 747
Bst6I	CTCTTC	1 cut(s)	633
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	107, 243, 608
BstDEI	CTNAG	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	3 cut(s)	185, 595, 756
BstKTI	GATC	6 cut(s)	7, 185, 260, 756, 797, 802
BstMAI	GTCTC	2 cut(s)	460, 610
BstMBI	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
BstMCI	CGRYCG	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	378, 420
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	4 cut(s)	224, 376, 418, 423
BstSFI	CTRYAG	2 cut(s)	239, 390
BstSNI	TACGTA	1 cut(s)	703
BstV1I	GCAGC	5 cut(s)	121, 124, 205, 615, 825
BstX2I	RGATCY	1 cut(s)	794
BstXI	CCANNNNNNTGG	1 cut(s)	826
BstYI	RGATCY	1 cut(s)	794
BstZ17I	GTATAC	1 cut(s)	867
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	6 cut(s)	350, 423, 428, 510, 543, 769
BsuTUI	ATCGAT	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	3 cut(s)	185, 595, 756
BtsI	GCAGTG	3 cut(s)	201, 236, 405
BtsIMutI	CAGTG	4 cut(s)	201, 236, 405, 640
Cac8I	GCNNGC	3 cut(s)	107, 243, 608
CaiI	CAGNNNCTG	1 cut(s)	797
CciI	TCATGA	1 cut(s)	810
Cfr13I	GGNCC	4 cut(s)	422, 427, 509, 542
ClaI	ATCGAT	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	160, 568
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviAII	CATG	7 cut(s)	131, 138, 295, 364, 607, 805, 811
CviQI	GTAC	2 cut(s)	160, 568
DdeI	CTNAG	1 cut(s)	575
DpnI	GATC	6 cut(s)	6, 184, 259, 755, 796, 801
DpnII	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	2 cut(s)	348, 767
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco105I	TACGTA	1 cut(s)	703
Eco130I	CCWWGG	2 cut(s)	363, 505
Eco31I	GGTCTC	1 cut(s)	610
Eco32I	GATATC	2 cut(s)	387, 816
EcoRII	CCWGG	2 cut(s)	376, 418
EcoRV	GATATC	2 cut(s)	387, 816
EcoT14I	CCWWGG	2 cut(s)	363, 505
ErhI	CCWWGG	2 cut(s)	363, 505
FaeI	CATG	7 cut(s)	134, 141, 298, 367, 610, 808, 814
FalI	AAGNNNNNCTT	2 cut(s)	722, 754
FatI	CATG	7 cut(s)	130, 137, 294, 363, 606, 804, 810
FbaI	TGATCA	2 cut(s)	753, 799
FblI	GTMKAC	2 cut(s)	231, 866
Fnu4HI	GCNGC	5 cut(s)	110, 113, 219, 604, 839
FokI	GGATG	3 cut(s)	172, 602, 763
Fsp4HI	GCNGC	5 cut(s)	110, 113, 219, 604, 839
FspBI	CTAG	3 cut(s)	176, 209, 215
GluI	GCNGC	5 cut(s)	110, 113, 219, 604, 839
HaeIII	GGCC	6 cut(s)	350, 423, 428, 510, 543, 769
HapII	CCGG	3 cut(s)	189, 225, 425
Hin1II	CATG	7 cut(s)	134, 141, 298, 367, 610, 808, 814
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	83, 250, 319, 455, 473
HpaII	CCGG	3 cut(s)	189, 225, 425
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	4 cut(s)	232, 568, 700, 867
Hpy188I	TCNGA	5 cut(s)	268, 525, 712, 728, 799
Hpy188III	TCNNGA	4 cut(s)	463, 561, 757, 811
Hpy8I	GTNNAC	4 cut(s)	232, 568, 700, 867
HpyAV	CCTTC	2 cut(s)	707, 727
HpyCH4III	ACNGT	3 cut(s)	335, 488, 747
HpyCH4IV	ACGT	3 cut(s)	198, 625, 702
HpyCH4V	TGCA	2 cut(s)	241, 841
HpyF3I	CTNAG	1 cut(s)	575
HpySE526I	ACGT	3 cut(s)	198, 625, 702
Hsp92II	CATG	7 cut(s)	134, 141, 298, 367, 610, 808, 814
Ksp22I	TGATCA	2 cut(s)	753, 799
Kzo9I	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
Lsp1109I	GCAGC	5 cut(s)	121, 124, 205, 615, 825
LweI	GCATC	2 cut(s)	405, 850
MaeI	CTAG	3 cut(s)	176, 209, 215
MaeII	ACGT	3 cut(s)	198, 625, 702
MaeIII	GTNAC	5 cut(s)	169, 191, 199, 329, 403
MalI	GATC	6 cut(s)	6, 184, 259, 755, 796, 801
MboI	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
MboII	GAAGA	3 cut(s)	47, 50, 650
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	1 cut(s)	794
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	4 cut(s)	19, 582, 676, 852
MluNI	TGGCCA	1 cut(s)	350
MlyI	GAGTC	2 cut(s)	92, 464
MmeI	TCCRAC	3 cut(s)	291, 548, 706
MnlI	CCTC	5 cut(s)	279, 440, 531, 580, 634
Mox20I	TGGCCA	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	2 cut(s)	447, 858
MslI	CAYNNNNRTG	2 cut(s)	611, 809
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	3 cut(s)	189, 225, 425
MspR9I	CCNGG	4 cut(s)	226, 378, 420, 425
MunI	CAATTG	1 cut(s)	582
MvaI	CCWGG	2 cut(s)	378, 420
NciI	CCSGG	2 cut(s)	226, 425
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
NlaIII	CATG	7 cut(s)	134, 141, 298, 367, 610, 808, 814
NlaIV	GGNNCC	1 cut(s)	90
NmuCI	GTSAC	4 cut(s)	191, 199, 329, 403
NspI	RCATGY	1 cut(s)	610
PaeI	GCATGC	1 cut(s)	610
PagI	TCATGA	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	250, 319, 473
PkrI	GCNGC	5 cut(s)	111, 114, 220, 605, 840
Ple19I	CGATCG	1 cut(s)	260
PleI	GAGTC	2 cut(s)	91, 463
PpsI	GAGTC	2 cut(s)	91, 463
Ppu21I	YACGTR	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	376, 418
PspGI	CCWGG	2 cut(s)	376, 418
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	4 cut(s)	422, 427, 509, 542
PstI	CTGCAG	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	794
PvuI	CGATCG	1 cut(s)	260
RsaI	GTAC	2 cut(s)	161, 569
RsaNI	GTAC	2 cut(s)	160, 568
RseI	CAYNNNNRTG	2 cut(s)	611, 809
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	2 cut(s)	447, 858
SatI	GCNGC	5 cut(s)	110, 113, 219, 604, 839
Sau3AI	GATC	6 cut(s)	4, 182, 257, 753, 794, 799
Sau96I	GGNCC	4 cut(s)	422, 427, 509, 542
SchI	GAGTC	2 cut(s)	92, 464
ScrFI	CCNGG	4 cut(s)	226, 378, 420, 425
SfaNI	GCATC	2 cut(s)	405, 850
SfcI	CTRYAG	2 cut(s)	239, 390
SmiMI	CAYNNNNRTG	2 cut(s)	611, 809
SmlI	CTYRAG	3 cut(s)	283, 357, 659
SmoI	CTYRAG	3 cut(s)	283, 357, 659
SnaBI	TACGTA	1 cut(s)	703
SphI	GCATGC	1 cut(s)	610
Sse9I	AATT	4 cut(s)	19, 582, 676, 852
SspMI	CTAG	3 cut(s)	176, 209, 215
StyD4I	CCNGG	4 cut(s)	224, 376, 418, 423
StyI	CCWWGG	2 cut(s)	363, 505
TaaI	ACNGT	3 cut(s)	335, 488, 747
TaiI	ACGT	3 cut(s)	201, 628, 705
TaqI	TCGA	4 cut(s)	81, 231, 260, 490
TaqII	GACCGA	1 cut(s)	676
TasI	AATT	4 cut(s)	19, 582, 676, 852
TfiI	GAWTC	3 cut(s)	250, 319, 473
Tru1I	TTAA	2 cut(s)	447, 858
Tru9I	TTAA	2 cut(s)	447, 858
TscAI	CASTG	4 cut(s)	208, 243, 412, 640
TseFI	GTSAC	4 cut(s)	191, 199, 329, 403
TseI	GCWGC	5 cut(s)	109, 112, 218, 603, 838
Tsp45I	GTSAC	4 cut(s)	191, 199, 329, 403
TspDTI	ATGAA	3 cut(s)	90, 119, 283
TspRI	CASTG	4 cut(s)	208, 243, 412, 640
XapI	RAATTY	1 cut(s)	19
XceI	RCATGY	1 cut(s)	610
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XmiI	GTMKAC	2 cut(s)	231, 866
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	3 cut(s)	176, 209, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.