Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012663

Physical Location & Seq

Genomic Coordinates Forward (+)

54411192 .. 54412474

Gene Structure 1283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014534

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATCAAAGAAAGCAGCACTTGATCACAGCAACCATTTCATTTCTGATCGCTCTTCTCTGTTTGGCAAACAAGACCTTAGCATCATCACAGTCCGATAAGAAGCACTTTGTGCTAGTTCATGGGTCATGCCATGGAGCTTGGTCCTGGTACAAGATCGTAACCCTAATTAGGTCATCTGATCACAATGTCACTGCTCTAGACCTAGCTGCTTCTGGTGTTGACCCACAGCAAGCTAATGATCTGCACTCAATTTCCAACTACTTCAAGCCCTTGAGGGATTTCATGGAAGCTCTTCCACAACATGAAAGGGTCATCCTTGTTGGTCATAGCCTTGGCGGGTTGGCCATTTCTCAAGCCATGGAGAGGTTTCCGAGTAAGATTTCTGTAGCTGTTTTTGTTGCTGCTTTGATGCCTGGTCCGAACCTCAACATTTCCACTCTTCAACAAGAGTCATTTCGGCGACAAGATTCTCAATTGGACAGCCGATTTACATATGACCAAGGGCCAAACAACCCTCCAACAACTTTCATCTTCGGCCCCGTGTATTTGGCAACTAAGGTCTACCAACTTAGCCCTAAGGAGGATATAGAACTGGCGACTATGTTAATGAGACCACTACGTTTGTTTAGTGAAGAAGACATGTCTAAGGAACTAAAGCTGTCCAAGGAGAAATACGGGTCGGTCAATCGGGTTTTCATAATCGCAGATGAAGATTTGGTCGGAAGGAAAGATTTTCAACTGTGGGTGATTGACAGAAATCGCCCAAATCGTGTGGTGGAAATGAGAGGATCAGATCACATGGTCATGATGTCAAAGCCATTAGAGCTTTGGGGGCTTCTTCAAAACCTTGCTACAAATTATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

290

Amino Acids

32.72

Weight (kDa)

7.82

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	33 - 141	4.2e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	36 - 274	7.5e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	37 - 276	3.3e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012663)

Species	Orthologous Gene IDs
malus_domestica	MD05G1074300.v1.1
prunus_persica	Prupe.8G114700_v2.0.a1 Prupe.8G115000_v2.0.a1 Prupe.8G115300_v2.0.a1
pyrus_communis	pycom05g06700
rosa_chinensis	RchiOBHm_Chr4g0407461 RchiOBHm_Chr6g0259411 RchiOBHm_Chr6g0259431
rosa_laevigata	RLG00000014534
rosa_multiflora	Rmu_sc0006836.1_g000015 Rmu_ssc0000050.1_g000045
rosa_roxburghii	Rroxscaffold_7G00206700
rosa_rugosa	Rorug05G0588800 Rorug06G0097000
rosa_samantha	Rh6AG104500 Rh6BG097700 Rh6CG093600 Rh6DG087500
rosa_wichuraiana	Rw6G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	564
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	2 cut(s)	12, 799
AcoI	YGGCCR	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	171, 366, 583
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	4 cut(s)	268, 446, 740, 845
AjnI	CCWGG	2 cut(s)	146, 415
AluBI	AGCT	7 cut(s)	140, 209, 236, 293, 392, 661, 829
AluI	AGCT	7 cut(s)	140, 209, 236, 293, 392, 661, 829
Alw26I	GTCTC	1 cut(s)	607
AlwI	GGATC	2 cut(s)	12, 799
AoxI	GGCC	3 cut(s)	345, 506, 538
ApeKI	GCWGC	3 cut(s)	16, 209, 404
Asp700I	GAANNNNTTC	1 cut(s)	294
AspS9I	GGNCC	4 cut(s)	144, 419, 506, 539
AsuHPI	GGTGA	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	144, 419
AxyI	CCTNAGG	1 cut(s)	579
BalI	TGGCCA	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	645
BbvI	GCAGC	3 cut(s)	28, 196, 391
BciT130I	CCWGG	2 cut(s)	148, 417
BclI	TGATCA	2 cut(s)	24, 181
BcoDI	GTCTC	1 cut(s)	607
BfaI	CTAG	3 cut(s)	116, 200, 206
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	3 cut(s)	17, 210, 405
BlsI	GCNGC	3 cut(s)	18, 211, 406
Bme1390I	CCNGG	2 cut(s)	148, 417
Bme18I	GGWCC	2 cut(s)	144, 419
BmgT120I	GGNCC	4 cut(s)	144, 419, 506, 539
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	2 cut(s)	148, 417
BmsI	GCATC	2 cut(s)	92, 402
BpiI	GAAGAC	1 cut(s)	645
Bpu10I	CCTNAGC	1 cut(s)	79
BpuEI	CTTGAG	2 cut(s)	295, 339
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	5 cut(s)	133, 334, 360, 502, 666
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 366, 583
Bse1I	ACTGG	1 cut(s)	600
Bse21I	CCTNAGG	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	148, 417
BseDI	CCNNGG	5 cut(s)	133, 334, 360, 502, 666
BseGI	GGATG	1 cut(s)	315
BseLI	CCNNNNNNNGG	3 cut(s)	171, 366, 583
BseNI	ACTGG	1 cut(s)	600
BseXI	GCAGC	3 cut(s)	28, 196, 391
BsgI	GTGCAG	1 cut(s)	230
BshFI	GGCC	3 cut(s)	347, 508, 540
BslI	CCNNNNNNNGG	3 cut(s)	171, 366, 583
BsmAI	GTCTC	1 cut(s)	607
BsnI	GGCC	3 cut(s)	347, 508, 540
Bso31I	GGTCTC	1 cut(s)	607
Bsp143I	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
Bsp19I	CCATGG	2 cut(s)	133, 360
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	3 cut(s)	347, 508, 540
BspHI	TCATGA	1 cut(s)	807
BspLI	GGNNCC	1 cut(s)	541
BspPI	GGATC	2 cut(s)	12, 799
BspQI	GCTCTTC	2 cut(s)	60, 300
BspTNI	GGTCTC	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	5 cut(s)	133, 334, 360, 502, 666
BssMI	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
BssT1I	CCWWGG	5 cut(s)	133, 334, 360, 502, 666
Bst2UI	CCWGG	2 cut(s)	148, 417
Bst4CI	ACNGT	2 cut(s)	93, 744
Bst6I	CTCTTC	3 cut(s)	60, 300, 447
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	5 cut(s)	79, 558, 572, 579, 648
BstDSI	CCRYGG	2 cut(s)	133, 360
BstF5I	GGATG	1 cut(s)	315
BstKTI	GATC	8 cut(s)	7, 27, 51, 159, 184, 244, 794, 799
BstMAI	GTCTC	1 cut(s)	607
BstMBI	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 826, 835
BstNI	CCWGG	2 cut(s)	148, 417
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	2 cut(s)	146, 415
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	3 cut(s)	28, 196, 391
BstV2I	GAAGAC	1 cut(s)	645
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	347, 508, 540
BtgI	CCRYGG	2 cut(s)	133, 360
BtsCI	GGATG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	1 cut(s)	234
CciI	TCATGA	1 cut(s)	807
Cfr13I	GGNCC	4 cut(s)	144, 419, 506, 539
Csp6I	GTAC	1 cut(s)	151
CspCI	CAANNNNNGTGG	4 cut(s)	606, 641, 756, 791
CviAII	CATG	9 cut(s)	122, 129, 134, 286, 305, 361, 643, 802, 808
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	5 cut(s)	79, 558, 572, 579, 648
DpnI	GATC	8 cut(s)	6, 26, 50, 158, 183, 243, 793, 798
DpnII	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
DraIII	CACNNNGTG	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	60, 300, 447
EarI	CTCTTC	3 cut(s)	60, 300, 447
Eco130I	CCWWGG	5 cut(s)	133, 334, 360, 502, 666
Eco31I	GGTCTC	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	144, 419
Eco81I	CCTNAGG	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	146, 415
EcoT14I	CCWWGG	5 cut(s)	133, 334, 360, 502, 666
ErhI	CCWWGG	5 cut(s)	133, 334, 360, 502, 666
FaeI	CATG	9 cut(s)	125, 132, 137, 289, 308, 364, 646, 805, 811
FalI	AAGNNNNNCTT	3 cut(s)	37, 92, 124
FatI	CATG	9 cut(s)	121, 128, 133, 285, 304, 360, 642, 801, 807
FauI	CCCGC	1 cut(s)	332
FauNDI	CATATG	1 cut(s)	496
FbaI	TGATCA	2 cut(s)	24, 181
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	3 cut(s)	17, 210, 405
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	17, 210, 405
FspBI	CTAG	3 cut(s)	116, 200, 206
GluI	GCNGC	3 cut(s)	17, 210, 405
HaeIII	GGCC	3 cut(s)	347, 508, 540
Hin1II	CATG	9 cut(s)	125, 132, 137, 289, 308, 364, 646, 805, 811
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	452, 470
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	2 cut(s)	223, 565
Hpy188I	TCNGA	7 cut(s)	48, 97, 181, 375, 423, 725, 796
Hpy188III	TCNNGA	2 cut(s)	200, 808
Hpy8I	GTNNAC	2 cut(s)	223, 565
HpyAV	CCTTC	1 cut(s)	720
HpyCH4III	ACNGT	2 cut(s)	93, 744
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 826, 835
HpyF3I	CTNAG	5 cut(s)	79, 558, 572, 579, 648
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	9 cut(s)	125, 132, 137, 289, 308, 364, 646, 805, 811
Ksp22I	TGATCA	2 cut(s)	24, 181
Kzo9I	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
LguI	GCTCTTC	2 cut(s)	60, 300
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	6 cut(s)	133, 160, 201, 402, 429, 581
Lsp1109I	GCAGC	3 cut(s)	28, 196, 391
LweI	GCATC	2 cut(s)	92, 402
MaeI	CTAG	3 cut(s)	116, 200, 206
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	2 cut(s)	160, 190
MalI	GATC	8 cut(s)	6, 26, 50, 158, 183, 243, 793, 798
MboI	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
MboII	GAAGA	8 cut(s)	47, 287, 434, 526, 647, 650, 725, 833
MfeI	CAATTG	1 cut(s)	476
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	4 cut(s)	168, 252, 476, 859
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	3 cut(s)	282, 545, 703
MnlI	CCTC	6 cut(s)	270, 360, 437, 528, 577, 782
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	1 cut(s)	608
MslI	CAYNNNNRTG	1 cut(s)	806
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	148, 417
MunI	CAATTG	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	148, 417
MwoI	GCNNNNNNNGC	3 cut(s)	112, 826, 835
NcoI	CCATGG	2 cut(s)	133, 360
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
NlaIII	CATG	9 cut(s)	125, 132, 137, 289, 308, 364, 646, 805, 811
NlaIV	GGNNCC	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	646
PagI	TCATGA	1 cut(s)	807
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	2 cut(s)	60, 300
PcsI	WCGNNNNNNNCGW	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	18, 211, 406
PleI	GAGTC	1 cut(s)	460
PpsI	GAGTC	1 cut(s)	460
PscI	ACATGT	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	146, 415
PspGI	CCWGG	2 cut(s)	146, 415
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	4 cut(s)	144, 419, 506, 539
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	806
SapI	GCTCTTC	2 cut(s)	60, 300
SaqAI	TTAA	1 cut(s)	608
SatI	GCNGC	3 cut(s)	17, 210, 405
Sau3AI	GATC	8 cut(s)	4, 24, 48, 156, 181, 241, 791, 796
Sau96I	GGNCC	4 cut(s)	144, 419, 506, 539
SchI	GAGTC	1 cut(s)	461
ScrFI	CCNGG	2 cut(s)	148, 417
SfaNI	GCATC	2 cut(s)	92, 402
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	144, 419
SmiMI	CAYNNNNRTG	1 cut(s)	806
SmlI	CTYRAG	2 cut(s)	274, 354
SmoI	CTYRAG	2 cut(s)	274, 354
Sse9I	AATT	4 cut(s)	168, 252, 476, 859
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	3 cut(s)	116, 200, 206
StyD4I	CCNGG	2 cut(s)	146, 415
StyI	CCWWGG	5 cut(s)	133, 334, 360, 502, 666
TaaI	ACNGT	2 cut(s)	93, 744
TaiI	ACGT	1 cut(s)	625
TaqII	GACCGA	1 cut(s)	673
TasI	AATT	4 cut(s)	168, 252, 476, 859
TfiI	GAWTC	1 cut(s)	470
Tru1I	TTAA	1 cut(s)	608
Tru9I	TTAA	1 cut(s)	608
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	16, 209, 404
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	7 cut(s)	30, 110, 274, 321, 520, 688, 726
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	2 cut(s)	144, 419
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	646
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	1 cut(s)	294
XspI	CTAG	3 cut(s)	116, 200, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.