Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012663

Physical Location & Seq

Genomic Coordinates Forward (+)

9322764 .. 9323243

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATCAACGAAAGCAAAATTTGATTACATCAATCTTTACTTTTCTCATCGTTCTTCTTCTCTGTGTAGCAAATGAGATCAAGTCGGCACCTACAAATCCTAGCAAGCAGCAGCACTTTGTGTTAGTTCATGGGTCATGCTTCGGTGCTTGGTCTTGGTACAAGCTTGTAACCCTAGTTAGATCATCCGGTCACAACGTCACTGCCCTAGACCTAGCTGCTTCTGGGGTCGACCCACAGCAGGCAAAGAATTTGCAATCGATTTCCGACTACTTGAAGCCCTTGAGGGATTTCATGGAAGCTATTGATGGAAAGGTGATTCTTGTTGGTCATAGTCTTGGTGGGTTGGCCATTTCTCAAGCCATGGAAAGATTTCCAGGTAAGATATCTGTAGCTGTTTTTGTCACTGCCCTGATGCCAGGCCCGGCCCTCAACATTTCCAGCCTTAATAAAGAGGTACCTAGCTGCACATTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

160

Amino Acids

17.24

Weight (kDa)

8.86

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	37 - 139	2e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 144	1.8e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 143	1.2e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012663)

Species	Orthologous Gene IDs
malus_domestica	MD05G1074300.v1.1
prunus_persica	Prupe.8G114700_v2.0.a1 Prupe.8G115000_v2.0.a1 Prupe.8G115300_v2.0.a1
pyrus_communis	pycom05g06700
rosa_chinensis	RchiOBHm_Chr4g0407461 RchiOBHm_Chr6g0259411 RchiOBHm_Chr6g0259431
rosa_laevigata	RLG00000014534
rosa_multiflora	Rmu_sc0006836.1_g000015 Rmu_ssc0000050.1_g000045
rosa_roxburghii	Rroxscaffold_7G00206700
rosa_rugosa	Rorug05G0588800 Rorug06G0097000
rosa_samantha	Rh6AG104500 Rh6BG097700 Rh6CG093600 Rh6DG087500
rosa_wichuraiana	Rw6G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	478
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	2 cut(s)	88, 457
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	19, 250
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	2 cut(s)	161, 459
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	2 cut(s)	376, 418
AluBI	AGCT	5 cut(s)	166, 218, 302, 395, 465
AluI	AGCT	5 cut(s)	166, 218, 302, 395, 465
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	348, 421, 426
ApeKI	GCWGC	4 cut(s)	109, 112, 218, 465
ApoI	RAATTY	2 cut(s)	19, 250
Asp700I	GAANNNNTTC	1 cut(s)	372
Asp718I	GGTACC	1 cut(s)	457
AspS9I	GGNCC	2 cut(s)	422, 427
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	350
BanI	GGYRCC	2 cut(s)	88, 457
BbvI	GCAGC	4 cut(s)	121, 124, 205, 452
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	378, 420
BcnI	CCSGG	1 cut(s)	425
BfaI	CTAG	5 cut(s)	102, 176, 209, 215, 462
BfmI	CTRYAG	1 cut(s)	390
BisI	GCNGC	4 cut(s)	110, 113, 219, 466
BlsI	GCNGC	4 cut(s)	111, 114, 220, 467
Bme1390I	CCNGG	3 cut(s)	378, 420, 425
BmgT120I	GGNCC	2 cut(s)	422, 427
BmiI	GGNNCC	2 cut(s)	90, 459
BmrFI	CCNGG	3 cut(s)	378, 420, 425
BmsI	GCATC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	304, 342
BpuMI	CCSGG	1 cut(s)	425
Bsa29I	ATCGAT	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	378, 420
BseCI	ATCGAT	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	121, 124, 205, 452
BsgI	GTGCAG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	350, 423, 428
BshNI	GGYRCC	2 cut(s)	88, 457
BshVI	ATCGAT	1 cut(s)	260
BsiSI	CCGG	2 cut(s)	189, 425
BslI	CCNNNNNNNGG	1 cut(s)	241
BsnI	GGCC	3 cut(s)	350, 423, 428
Bsp143I	GATC	3 cut(s)	4, 78, 182
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	3 cut(s)	350, 423, 428
BspDI	ATCGAT	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	90, 459
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	2 cut(s)	88, 457
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	4, 78, 182
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	378, 420
BstC8I	GCNNGC	2 cut(s)	107, 243
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	3 cut(s)	7, 81, 185
BstMBI	GATC	3 cut(s)	4, 78, 182
BstNI	CCWGG	2 cut(s)	378, 420
BstSCI	CCNGG	3 cut(s)	376, 418, 423
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	121, 124, 205, 452
Bsu15I	ATCGAT	1 cut(s)	260
BsuRI	GGCC	3 cut(s)	350, 423, 428
BsuTUI	ATCGAT	1 cut(s)	260
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	2 cut(s)	201, 405
BtsIMutI	CAGTG	2 cut(s)	201, 405
Cac8I	GCNNGC	2 cut(s)	107, 243
Cfr13I	GGNCC	2 cut(s)	422, 427
ClaI	ATCGAT	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	160, 458
CviAII	CATG	4 cut(s)	131, 138, 295, 364
CviQI	GTAC	2 cut(s)	160, 458
DpnI	GATC	3 cut(s)	6, 80, 184
DpnII	GATC	3 cut(s)	4, 78, 182
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	376, 418
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	4 cut(s)	134, 141, 298, 367
FaiI	YATR	6 cut(s)	132, 139, 296, 333, 365, 478
FatI	CATG	4 cut(s)	130, 137, 294, 363
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	110, 113, 219, 466
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	4 cut(s)	110, 113, 219, 466
FspBI	CTAG	5 cut(s)	102, 176, 209, 215, 462
GluI	GCNGC	4 cut(s)	110, 113, 219, 466
HaeIII	GGCC	3 cut(s)	350, 423, 428
HapII	CCGG	2 cut(s)	189, 425
Hin1II	CATG	4 cut(s)	134, 141, 298, 367
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	1 cut(s)	319
HpaII	CCGG	2 cut(s)	189, 425
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	2 cut(s)	256, 468
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	4 cut(s)	134, 141, 298, 367
KpnI	GGTACC	1 cut(s)	461
Kzo9I	GATC	3 cut(s)	4, 78, 182
Lsp1109I	GCAGC	4 cut(s)	121, 124, 205, 452
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	5 cut(s)	102, 176, 209, 215, 462
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	4 cut(s)	169, 191, 199, 403
MalI	GATC	3 cut(s)	6, 80, 184
MboI	GATC	3 cut(s)	4, 78, 182
MboII	GAAGA	2 cut(s)	47, 50
MlsI	TGGCCA	1 cut(s)	350
MluCI	AATT	2 cut(s)	19, 250
MluNI	TGGCCA	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	3 cut(s)	279, 440, 448
Mox20I	TGGCCA	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	372
MscI	TGGCCA	1 cut(s)	350
MseI	TTAA	1 cut(s)	447
Msp20I	TGGCCA	1 cut(s)	350
MspI	CCGG	2 cut(s)	189, 425
MspR9I	CCNGG	3 cut(s)	378, 420, 425
MvaI	CCWGG	2 cut(s)	378, 420
NciI	CCSGG	1 cut(s)	425
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	4, 78, 182
NlaIII	CATG	4 cut(s)	134, 141, 298, 367
NlaIV	GGNNCC	2 cut(s)	90, 459
NmuCI	GTSAC	3 cut(s)	191, 199, 403
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	111, 114, 220, 467
PsiI	TTATAA	1 cut(s)	478
Psp6I	CCWGG	2 cut(s)	376, 418
PspGI	CCWGG	2 cut(s)	376, 418
PspN4I	GGNNCC	2 cut(s)	90, 459
PspPI	GGNCC	2 cut(s)	422, 427
RsaI	GTAC	2 cut(s)	161, 459
RsaNI	GTAC	2 cut(s)	160, 458
SalI	GTCGAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	4 cut(s)	110, 113, 219, 466
Sau3AI	GATC	3 cut(s)	4, 78, 182
Sau96I	GGNCC	2 cut(s)	422, 427
ScrFI	CCNGG	3 cut(s)	378, 420, 425
SfaNI	GCATC	1 cut(s)	405
SfcI	CTRYAG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	283, 357
SmoI	CTYRAG	2 cut(s)	283, 357
Sse9I	AATT	2 cut(s)	19, 250
SspMI	CTAG	5 cut(s)	102, 176, 209, 215, 462
StyD4I	CCNGG	3 cut(s)	376, 418, 423
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	2 cut(s)	231, 260
TasI	AATT	2 cut(s)	19, 250
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	208, 412
TseFI	GTSAC	3 cut(s)	191, 199, 403
TseI	GCWGC	4 cut(s)	109, 112, 218, 465
Tsp45I	GTSAC	3 cut(s)	191, 199, 403
TspDTI	ATGAA	2 cut(s)	119, 283
TspRI	CASTG	2 cut(s)	208, 412
XapI	RAATTY	2 cut(s)	19, 250
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	5 cut(s)	102, 176, 209, 215, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.