Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012663

Physical Location & Seq

Genomic Coordinates Reverse (-)

56469127 .. 56470577

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATCAAAGAAAGCAGCACTTGATCACAGCAACGGTAGCAACCATTCCATTTCTGATCATTCTTCTCTGTTTGGCAAACAAGACCTTAGCATCATCACTGTCCGATAAGAAGCACTTTGTGCTAGTTCATGGGTCATGCCATGGAGCTTGGTCCTGGTACAAGATCGTAACCCTAATTAGGTCATCTGGTCACAACGTCACTGCTCTAGACCTAGCTGCTTCTGGCGTTGACCCACAGCAAGCTAATGATCTGCAATCAATTTCGGACTACTTCAAGCCCTTCAGGGATTTCATGGAAGCTCTTCCACAACATGAAAGGGCCATCCTTGTTGGTCATAGCCTCGGCGGGTTGGCCATTTCTCAAGCCATGGAGAGGTTTCCGAGTAAGATTTCTGTGGCTGTTTTTGTTGCTGCTTTGATGCCTGGTCCGAACCTCAACATTTCCACTCTTCAACAAGAGTCATTTCGGCGGCAAGATTCTCAATTGGACAGCCGATTTACATATGACCAAGGGCCAAACAACCCTCCAACAACTTTCATCTTCGGTCCCGTGTATTTGGCAACTAAGGTCTACCAACTCAGCCCTAAGGAGGATATAGAACTGGCCACCATGTTAATGAGACCACTACGTTTGTTTAGTGAAGAAGACATGTCTAAGGAACTAAAGCTGTCCAAGGAGAAATACGGGTCGGTCAATCGGGTTTTCATAATCGCAGATGAAGATTTGATCGGAAGGAAAGATTTTCAACTGTGGGTGATTGAGAGAAATCGCCCAAATCGTGTGGTGGAAATGAGAGGATCAGATCACATGGTCATGATGTCAAAGCCATTAGAGCTTTGGGGGCTTCTTCAAAACCTTGCTACAAATTATTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

292

Amino Acids

33.0

Weight (kDa)

7.81

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	37 - 144	1.4e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	39 - 277	5.2e-17	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	40 - 279	8.2e-19	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012663)

Species	Orthologous Gene IDs
malus_domestica	MD05G1074300.v1.1
prunus_persica	Prupe.8G114700_v2.0.a1 Prupe.8G115000_v2.0.a1 Prupe.8G115300_v2.0.a1
pyrus_communis	pycom05g06700
rosa_chinensis	RchiOBHm_Chr4g0407461 RchiOBHm_Chr6g0259411 RchiOBHm_Chr6g0259431
rosa_laevigata	RLG00000014534
rosa_multiflora	Rmu_sc0006836.1_g000015 Rmu_ssc0000050.1_g000045
rosa_roxburghii	Rroxscaffold_7G00206700
rosa_rugosa	Rorug05G0588800 Rorug06G0097000
rosa_samantha	Rh6AG104500 Rh6BG097700 Rh6CG093600 Rh6DG087500
rosa_wichuraiana	Rw6G009030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	573
AciI	CCGC	2 cut(s)	348, 472
AclWI	GGATC	2 cut(s)	12, 808
AcoI	YGGCCR	2 cut(s)	354, 606
AcuI	CTGAAG	1 cut(s)	268
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	180, 375, 592
AflIII	ACRYGT	1 cut(s)	651
AgsI	TTSAA	4 cut(s)	277, 455, 749, 854
AjnI	CCWGG	2 cut(s)	155, 424
AluBI	AGCT	6 cut(s)	149, 218, 245, 302, 670, 838
AluI	AGCT	6 cut(s)	149, 218, 245, 302, 670, 838
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	2 cut(s)	12, 808
AoxI	GGCC	4 cut(s)	321, 354, 515, 606
ApeKI	GCWGC	3 cut(s)	16, 218, 413
Asp700I	GAANNNNTTC	1 cut(s)	303
AspS9I	GGNCC	5 cut(s)	153, 321, 428, 515, 548
AsuHPI	GGTGA	1 cut(s)	769
AvaII	GGWCC	3 cut(s)	153, 428, 548
AxyI	CCTNAGG	1 cut(s)	588
BalI	TGGCCA	2 cut(s)	356, 608
BbsI	GAAGAC	1 cut(s)	654
BbvI	GCAGC	3 cut(s)	28, 205, 400
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	2 cut(s)	157, 426
BclI	TGATCA	2 cut(s)	24, 57
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	3 cut(s)	125, 209, 215
BisI	GCNGC	4 cut(s)	17, 219, 414, 473
BlsI	GCNGC	4 cut(s)	18, 220, 415, 474
Bme1390I	CCNGG	2 cut(s)	157, 426
Bme18I	GGWCC	3 cut(s)	153, 428, 548
BmgT120I	GGNCC	5 cut(s)	153, 321, 428, 515, 548
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	2 cut(s)	157, 426
BmsI	GCATC	2 cut(s)	101, 411
BpiI	GAAGAC	1 cut(s)	654
Bpu10I	CCTNAGC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	5 cut(s)	142, 343, 369, 511, 675
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 375, 592
Bse1I	ACTGG	1 cut(s)	609
Bse21I	CCTNAGG	1 cut(s)	588
BseBI	CCWGG	2 cut(s)	157, 426
BseDI	CCNNGG	5 cut(s)	142, 343, 369, 511, 675
BseGI	GGATG	1 cut(s)	324
BseLI	CCNNNNNNNGG	3 cut(s)	180, 375, 592
BseMII	CTCAG	1 cut(s)	595
BseNI	ACTGG	1 cut(s)	609
BseXI	GCAGC	3 cut(s)	28, 205, 400
BshFI	GGCC	4 cut(s)	323, 356, 517, 608
BslFI	GGGAC	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	180, 375, 592
BsmAI	GTCTC	1 cut(s)	616
BsmFI	GGGAC	1 cut(s)	534
BsnI	GGCC	4 cut(s)	323, 356, 517, 608
Bso31I	GGTCTC	1 cut(s)	616
Bsp143I	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
Bsp19I	CCATGG	2 cut(s)	142, 369
BspACI	CCGC	2 cut(s)	348, 472
BspANI	GGCC	4 cut(s)	323, 356, 517, 608
BspCNI	CTCAG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	2 cut(s)	12, 808
BspQI	GCTCTTC	1 cut(s)	309
BspTNI	GGTCTC	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	609
BssECI	CCNNGG	5 cut(s)	142, 343, 369, 511, 675
BssMI	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
BssT1I	CCWWGG	4 cut(s)	142, 369, 511, 675
Bst2UI	CCWGG	2 cut(s)	157, 426
Bst4CI	ACNGT	3 cut(s)	37, 102, 753
Bst6I	CTCTTC	2 cut(s)	309, 456
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	5 cut(s)	88, 567, 581, 588, 657
BstDSI	CCRYGG	2 cut(s)	142, 369
BstF5I	GGATG	1 cut(s)	324
BstKTI	GATC	8 cut(s)	7, 27, 60, 168, 253, 732, 803, 808
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 121, 835, 844
BstNI	CCWGG	2 cut(s)	157, 426
BstNSI	RCATGY	1 cut(s)	655
BstSCI	CCNGG	2 cut(s)	155, 424
BstV1I	GCAGC	3 cut(s)	28, 205, 400
BstV2I	GAAGAC	1 cut(s)	654
Bsu36I	CCTNAGG	1 cut(s)	588
BsuRI	GGCC	4 cut(s)	323, 356, 517, 608
BtgI	CCRYGG	2 cut(s)	142, 369
BtsCI	GGATG	1 cut(s)	324
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	2 cut(s)	98, 201
Cac8I	GCNNGC	1 cut(s)	243
CciI	TCATGA	1 cut(s)	816
Cfr13I	GGNCC	5 cut(s)	153, 321, 428, 515, 548
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	4 cut(s)	615, 650, 765, 800
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	5 cut(s)	88, 567, 581, 588, 657
DpnI	GATC	8 cut(s)	6, 26, 59, 167, 252, 731, 802, 807
DpnII	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
DraIII	CACNNNGTG	1 cut(s)	121
EaeI	YGGCCR	2 cut(s)	354, 606
Eam1104I	CTCTTC	2 cut(s)	309, 456
EarI	CTCTTC	2 cut(s)	309, 456
Eco130I	CCWWGG	4 cut(s)	142, 369, 511, 675
Eco31I	GGTCTC	1 cut(s)	616
Eco47I	GGWCC	3 cut(s)	153, 428, 548
Eco57I	CTGAAG	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	588
EcoRII	CCWGG	2 cut(s)	155, 424
EcoT14I	CCWWGG	4 cut(s)	142, 369, 511, 675
ErhI	CCWWGG	4 cut(s)	142, 369, 511, 675
FalI	AAGNNNNNCTT	3 cut(s)	37, 101, 133
FaqI	GGGAC	1 cut(s)	534
FauI	CCCGC	1 cut(s)	341
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	2 cut(s)	24, 57
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	4 cut(s)	17, 219, 414, 473
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	17, 219, 414, 473
FspBI	CTAG	3 cut(s)	125, 209, 215
GluI	GCNGC	4 cut(s)	17, 219, 414, 473
HaeIII	GGCC	4 cut(s)	323, 356, 517, 608
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	2 cut(s)	461, 479
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	2 cut(s)	232, 574
Hpy188I	TCNGA	7 cut(s)	57, 106, 268, 384, 432, 734, 805
Hpy188III	TCNNGA	2 cut(s)	209, 817
Hpy8I	GTNNAC	2 cut(s)	232, 574
HpyAV	CCTTC	2 cut(s)	292, 729
HpyCH4III	ACNGT	3 cut(s)	37, 102, 753
HpyCH4IV	ACGT	2 cut(s)	198, 631
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 121, 835, 844
HpyF3I	CTNAG	5 cut(s)	88, 567, 581, 588, 657
HpySE526I	ACGT	2 cut(s)	198, 631
Ksp22I	TGATCA	2 cut(s)	24, 57
Kzo9I	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	8 cut(s)	142, 169, 174, 210, 271, 411, 438, 590
Lsp1109I	GCAGC	3 cut(s)	28, 205, 400
LweI	GCATC	2 cut(s)	101, 411
MaeI	CTAG	3 cut(s)	125, 209, 215
MaeII	ACGT	2 cut(s)	198, 631
MaeIII	GTNAC	3 cut(s)	169, 191, 199
MalI	GATC	8 cut(s)	6, 26, 59, 167, 252, 731, 802, 807
MboI	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
MboII	GAAGA	8 cut(s)	56, 296, 443, 535, 656, 659, 734, 842
MfeI	CAATTG	1 cut(s)	485
MlsI	TGGCCA	2 cut(s)	356, 608
MluCI	AATT	4 cut(s)	177, 261, 485, 868
MluNI	TGGCCA	2 cut(s)	356, 608
MlyI	GAGTC	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	6 cut(s)	353, 369, 446, 537, 586, 791
Mox20I	TGGCCA	2 cut(s)	356, 608
MroXI	GAANNNNTTC	1 cut(s)	303
MscI	TGGCCA	2 cut(s)	356, 608
MseI	TTAA	1 cut(s)	617
MslI	CAYNNNNRTG	2 cut(s)	617, 815
Msp20I	TGGCCA	2 cut(s)	356, 608
MspR9I	CCNGG	2 cut(s)	157, 426
MunI	CAATTG	1 cut(s)	485
MvaI	CCWGG	2 cut(s)	157, 426
MwoI	GCNNNNNNNGC	4 cut(s)	38, 121, 835, 844
NcoI	CCATGG	2 cut(s)	142, 369
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
NlaIV	GGNNCC	1 cut(s)	550
NmeAIII	GCCGAG	1 cut(s)	324
NmuCI	GTSAC	2 cut(s)	191, 199
NspI	RCATGY	1 cut(s)	655
PagI	TCATGA	1 cut(s)	816
PciI	ACATGT	1 cut(s)	651
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	4 cut(s)	18, 220, 415, 474
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PscI	ACATGT	1 cut(s)	651
Psp6I	CCWGG	2 cut(s)	155, 424
PspGI	CCWGG	2 cut(s)	155, 424
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	5 cut(s)	153, 321, 428, 515, 548
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	617, 815
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	617
SatI	GCNGC	4 cut(s)	17, 219, 414, 473
Sau3AI	GATC	8 cut(s)	4, 24, 57, 165, 250, 729, 800, 805
Sau96I	GGNCC	5 cut(s)	153, 321, 428, 515, 548
SchI	GAGTC	1 cut(s)	470
ScrFI	CCNGG	2 cut(s)	157, 426
SfaNI	GCATC	2 cut(s)	101, 411
SinI	GGWCC	3 cut(s)	153, 428, 548
SmiMI	CAYNNNNRTG	2 cut(s)	617, 815
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	177, 261, 485, 868
SsiI	CCGC	2 cut(s)	348, 472
SspMI	CTAG	3 cut(s)	125, 209, 215
StyD4I	CCNGG	2 cut(s)	155, 424
StyI	CCWWGG	4 cut(s)	142, 369, 511, 675
TaaI	ACNGT	3 cut(s)	37, 102, 753
TaiI	ACGT	2 cut(s)	201, 634
TaqII	GACCGA	2 cut(s)	536, 682
TasI	AATT	4 cut(s)	177, 261, 485, 868
TauI	GCSGC	1 cut(s)	475
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	617
Tru9I	TTAA	1 cut(s)	617
TscAI	CASTG	2 cut(s)	105, 208
TseFI	GTSAC	2 cut(s)	191, 199
TseI	GCWGC	3 cut(s)	16, 218, 413
Tsp45I	GTSAC	2 cut(s)	191, 199
TspDTI	ATGAA	6 cut(s)	119, 283, 330, 529, 697, 735
TspRI	CASTG	2 cut(s)	105, 208
VpaK11BI	GGWCC	3 cut(s)	153, 428, 548
XbaI	TCTAGA	1 cut(s)	208
XceI	RCATGY	1 cut(s)	655
XcmI	CCANNNNNNNNNTGG	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	1 cut(s)	303
XspI	CTAG	3 cut(s)	125, 209, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.