MD05G1099200.v1.1

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013102
Physical Location & Seq
Reverse (-)
20654992 .. 20655315
324 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1099200.v1.1.491

Sequence Viewer

Length: 324 bp
ATGTTTGCTTCTTTGCATCAAGAACAAGATAAAATGGTGTTTTGCAACCAGTTGCTACTTGGGCAGCTGATATTCGTCGAAAAGTTGGAGGCAGCGCATTCGGTGCTAGTGCTTAAAGGTATAAGGCCTATTTCGGGTCGATTTCCTTGTGTTAGAAACCTTGAAGATCTTTTTGCAAAGGAGAAGAGTAGAGATGTGGAGAAGAAGCCTCAGTGTAGATATCGATCTTTAATCCTATCAAAGTCCAACTCGAGTGAGAAAAAATGGGCCTTATGCAGCTCTGGAAGCGATGATGTTTTTTTTAGAGGGAAATGTGTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

108

Amino Acids

12.22

Weight (kDa)

9.25

Isoelectric Point (pI)

25.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 2 - 58 1.7e-12 Plant protein of unknown function (DUF936)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19610
fragaria_vesca FvH4_2g04240
malus_domestica MD05G1099200.v1.1
prunus_persica Prupe.8G143800_v2.0.a1 Prupe.8G143800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253661
rosa_laevigata RLG00000014995
rosa_multiflora Rmu_co8217522.1_g000001 Rmu_sc0001351.1_g000001
rosa_roxburghii Rroxscaffold_7G00211720
rosa_rugosa Rorug05G0545400
rosa_samantha Rh6AG061100 Rh6BG054900 Rh6CG054500 Rh6CG054600 Rh6DG052000 Rh6DG052100
rosa_wichuraiana Rw6G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 2 cut(s) 67, 279
AluI AGCT 2 cut(s) 67, 279
Ama87I CYCGRG 1 cut(s) 250
AoxI GGCC 2 cut(s) 125, 267
ApeKI GCWGC 3 cut(s) 64, 92, 276
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 250
BbvI GCAGC 3 cut(s) 76, 104, 288
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BfaI CTAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 166
BisI GCNGC 3 cut(s) 65, 93, 277
BlsI GCNGC 3 cut(s) 66, 94, 278
BmeT110I CYCGRG 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 267
BmsI GCATC 1 cut(s) 25
Bsa29I ATCGAT 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 49
Bse8I GATNNNNATC 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 223
BseJI GATNNNNATC 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 3 cut(s) 76, 104, 288
BshFI GGCC 2 cut(s) 127, 269
BshVI ATCGAT 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 134
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 127, 269
BsoBI CYCGRG 1 cut(s) 250
Bsp143I GATC 2 cut(s) 166, 224
BspANI GGCC 2 cut(s) 127, 269
BspCNI CTCAG 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 223
BsrI ACTGG 1 cut(s) 49
BssMI GATC 2 cut(s) 166, 224
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 103
BstDEI CTNAG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 2 cut(s) 169, 227
BstMBI GATC 2 cut(s) 166, 224
BstMWI GCNNNNNNNGC 3 cut(s) 61, 103, 285
BstV1I GCAGC 3 cut(s) 76, 104, 288
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 223
BsuRI GGCC 2 cut(s) 127, 269
BsuTUI ATCGAT 1 cut(s) 223
BtgZI GCGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 218
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 223
CviJI RGCY 5 cut(s) 67, 127, 208, 269, 279
CviKI_1 RGCY 5 cut(s) 67, 127, 208, 269, 279
DdeI CTNAG 1 cut(s) 210
DpnI GATC 2 cut(s) 168, 226
DpnII GATC 2 cut(s) 166, 224
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 127
Eco32I GATATC 1 cut(s) 221
Eco88I CYCGRG 1 cut(s) 250
EcoRV GATATC 1 cut(s) 221
FaiI YATR 2 cut(s) 122, 274
Fnu4HI GCNGC 3 cut(s) 65, 93, 277
Fsp4HI GCNGC 3 cut(s) 65, 93, 277
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 96
GluI GCNGC 3 cut(s) 65, 93, 277
HaeIII GGCC 2 cut(s) 127, 269
HhaI GCGC 1 cut(s) 97
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 20, 282
Hpy99I CGWCG 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 16, 45, 176, 276
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 103, 285
HpyF3I CTNAG 1 cut(s) 210
HspAI GCGC 1 cut(s) 95
Kzo9I GATC 2 cut(s) 166, 224
LpnPI CCDG 2 cut(s) 62, 267
Lsp1109I GCAGC 3 cut(s) 76, 104, 288
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 107
MalI GATC 2 cut(s) 168, 226
MboI GATC 2 cut(s) 166, 224
MboII GAAGA 3 cut(s) 176, 196, 214
MflI RGATCY 1 cut(s) 166
MmeI TCCRAC 2 cut(s) 66, 270
MnlI CCTC 3 cut(s) 82, 219, 299
MseI TTAA 2 cut(s) 114, 230
MspA1I CMGCKG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 3 cut(s) 61, 103, 285
NdeII GATC 2 cut(s) 166, 224
PaeR7I CTCGAG 1 cut(s) 250
PceI AGGCCT 1 cut(s) 127
PctI GAATGC 1 cut(s) 97
PkrI GCNGC 3 cut(s) 66, 94, 278
PspPI GGNCC 1 cut(s) 267
PspXI VCTCGAGB 1 cut(s) 250
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 67
SaqAI TTAA 2 cut(s) 114, 230
SatI GCNGC 3 cut(s) 65, 93, 277
Sau3AI GATC 2 cut(s) 166, 224
Sau96I GGNCC 1 cut(s) 267
SetI ASST 4 cut(s) 69, 121, 162, 281
SfaNI GCATC 1 cut(s) 25
Sfr274I CTCGAG 1 cut(s) 250
SlaI CTCGAG 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 250
SmoI CTYRAG 1 cut(s) 250
SseBI AGGCCT 1 cut(s) 127
SspMI CTAG 1 cut(s) 107
StuI AGGCCT 1 cut(s) 127
TaqI TCGA 4 cut(s) 78, 139, 223, 251
Tru1I TTAA 2 cut(s) 114, 230
Tru9I TTAA 2 cut(s) 114, 230
TscAI CASTG 1 cut(s) 218
TseI GCWGC 3 cut(s) 64, 92, 276
TspRI CASTG 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 250
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.