Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Reverse (-)

73413490 .. 73424717

Gene Structure 11228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0545400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGGTTTTGCTGCAATTCTTGAAGAGGAAGAAGCTGCTCAGATTGCTAGATGCAGAGGATCCAAATGTGATATCAATCTTCCTAAACAAGGGAAGAAAGCTGCAAACTACCCGGTCATGGAATTTTCTTGGATTAGAGAGAAATGGACTGATTCCTTCAGACTCCATTTGGAGGAAAGCAAGGTTTGGCGAAGATACAATAATTGCAAACATAGATACTGGTGTTTGGCCAGAATCCAAAAGCTTTAGTGATGAAGGGTTGGGACCTGTCCCTTCCAAGTGGCGTGGAACTTGTCAACATGATACAAAGCAAGTTCATTGCAACAGAAAGCTGATTGGAACTAGGTACTTTAATAATGGTCTTGCCATGTATGCCGGCCCTCTCAACTCGTCGTATTCCACTGTTCGCGACTACGATGGTCATGGATCACATACCCTATCCACGGCTGCGGGTGGATTTGTTCCAGGAGTTAGTGTTTTTGGCAATGGCAATGGAACCACCAAGGGTGGCTCTCCTCAAGCCCGTGTTGCTGCATATAAGGTATGCTGGCCACCATTTGAAGGTGTTGGGTGCTTCGAGGCAGACATCTTAGCTGCCTTTGATGCTGCAATAAGTGACGGTGTCGATGTAATCTCTGTGTCTCTTGGTGGAGGAACCGAGGAGTTTTTCAACAATGCAATTTCAATAGGGTCCTTCCATGCAGTTAAAAATGGCATTGTTGTGGTTAGTGCAGCTGGAAACTCTGGACCAAATCCAGGGACAGTATTAAACTTGTCGCCATGGTTAGTAACAGTTGGTGCTAGCACCATTGATCGAGAGTTCACAAGCTATGTTGTCCTCGGAAACAAAAAGCAATTGAAGGGAGCAAGCCTTTCAGCTAAAGGCTTACCATTTGAAATGTTTTACCCGTTGATCAGTGCTGCAGATGCGAGAGATGCTGATGCATCCACTGGAGAAGCTGAAATTTGCAATGTTGGAGCCCTCGATCCTAGGAAAGTAAAAGGAAAGATTTTGGTGTGCGTTCGAGAATACAACGATAATGAAAGAACCGAGAAGAGCCTGCAGGCTGATATTGCAGGTGCTGTAGGAATGATCTTGGTTAATGATAAGCAAAGTGGAAACGATGTTGTAGCCGATCCTCATGTGCTCCTTGTTTCACATCTCAATTACACCGACGGCAAACATGTCTTTGATTACATTAAATCTACCAAAACTCCTGTGGCTTACCTTACTCCAGTAAAGACTGAATTGGGAACAAAGCCAGCTCCGCATGTAGCTCCATTTTCATCAAGGGGGCCTAATCTTCTGGAGCAGGCAATCTTTAAGCCTGATATCATTGCACCAGGGGTGAGTATAATTGCTGCTTATACTGAAGCAACAGGGCCAACTTATCAATTATCTGATACTCGCCGGGTTTCTTTTAATGTTCAAACTGGCACTTCAATGGCGTGCCCTCATGTATCCGGAATTGCAGGGCTTCTGAGGAAACTCCATCCAGATTGGAGCCCAGCAGCTATTAAATCTGCAATCATGACAACTGCTACAACACAAGATGACAGCAATGAACCGATGCTTGACTCGTCTTATTTGAAGGCAACACCATTTGCTTATGGTGCAGGACACATTCAACCAAACAACGCAATGGACCCAGGGCTAATTTATAACCTAACAACACTTGATTACTTGAATTTCTTATGTGCTCGAGGATACAATGAAACAATGATCAAATCATTCTCCAATCCACCTTTCAAATGTCCCAAGTCTTTCAGTCTAGGAGACTTCAACTACCCAGCAATTGCAATTCCTAATCTCGGTGCAGAGTTAGTGACCGTTACTAGAAGAAAAGTTACAAATGTCGGATCACCTGGCACGTACAAAGTGTGCGTCAAGGCACCACCAGAAGTAATGGTTTTGGTTAAACCTAGAAGCTTGAAATTTGAGAGTATTGGTGAAGTGAAAAAGTTCAAAGTTATATTCAAAGCTAAGGTTAAGGGTAAGCCTCGAGGGTATGCATTTGGAGAGTTGATGTGGTCAGATGGCAATCACCATGTAAAGAGTCCTCTTGCAATGAAGCACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

693

Amino Acids

74.78

Weight (kDa)

9.03

Isoelectric Point (pI)

25.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	63 - 527	1e-40	Subtilase family
PA	PF02225	315 - 394	5.8e-10	PA domain
fn3_6	PF17766	593 - 689	2.2e-24	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1662
AarI	CACCTGC	1 cut(s)	1067
AbsI	CCTCGAGG	1 cut(s)	2001
Acc36I	ACCTGC	1 cut(s)	1067
AccB1I	GGYRCC	1 cut(s)	1891
AccII	CGCG	1 cut(s)	408
AccIII	TCCGGA	1 cut(s)	1463
AciI	CCGC	2 cut(s)	449, 1268
AclWI	GGATC	6 cut(s)	53, 66, 433, 980, 1130, 1867
AcoI	YGGCCR	2 cut(s)	227, 548
AcsI	RAATTY	4 cut(s)	121, 963, 1687, 1934
AcuI	CTGAAG	2 cut(s)	141, 1392
AfaI	GTAC	2 cut(s)	347, 1874
AfiI	CCNNNNNNNGG	7 cut(s)	88, 117, 171, 442, 560, 755, 1811
AflIII	ACRYGT	1 cut(s)	1183
AjnI	CCWGG	5 cut(s)	463, 754, 1342, 1648, 1864
AjuI	GAANNNNNNNTTGG	2 cut(s)	1730, 1762
Alw21I	GWGCWC	2 cut(s)	1149, 1702
Alw26I	GTCTC	2 cut(s)	645, 1770
AlwI	GGATC	6 cut(s)	53, 66, 433, 980, 1130, 1867
AlwNI	CAGNNNCTG	1 cut(s)	1082
Ama87I	CYCGRG	2 cut(s)	1701, 2001
Aor13HI	TCCGGA	1 cut(s)	1463
AoxI	GGCC	5 cut(s)	227, 376, 548, 1295, 1382
ApoI	RAATTY	4 cut(s)	121, 963, 1687, 1934
ArsI	GACNNNNNNTTYG	2 cut(s)	1869, 1901
Asp700I	GAANNNNTTC	1 cut(s)	1961
AspA2I	CCTAGG	1 cut(s)	989
AspS9I	GGNCC	7 cut(s)	263, 377, 690, 746, 1295, 1382, 1645
AsuC2I	CCSGG	2 cut(s)	112, 1412
AsuHPI	GGTGA	4 cut(s)	1360, 1854, 1961, 2036
AsuNHI	GCTAGC	1 cut(s)	800
AvaI	CYCGRG	2 cut(s)	1701, 2001
AvaII	GGWCC	4 cut(s)	263, 690, 746, 1645
AvrII	CCTAGG	1 cut(s)	989
BaeGI	GKGCMC	1 cut(s)	1454
BaeI	ACNNNNGTAYC	2 cut(s)	207, 240
BalI	TGGCCA	2 cut(s)	229, 550
BamHI	GGATCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	1891
BanII	GRGCYC	2 cut(s)	982, 1508
BarI	GAAGNNNNNNTAC	2 cut(s)	1831, 1863
Bbv12I	GWGCWC	2 cut(s)	1149, 1702
BccI	CCATC	3 cut(s)	410, 1500, 2030
BceAI	ACGGC	2 cut(s)	459, 1192
BciT130I	CCWGG	5 cut(s)	465, 756, 1344, 1650, 1866
BciVI	GTATCC	2 cut(s)	1471, 1700
BclI	TGATCA	2 cut(s)	912, 1722
BcnI	CCSGG	2 cut(s)	112, 1412
BcoDI	GTCTC	2 cut(s)	645, 1770
BfaI	CTAG	8 cut(s)	47, 342, 801, 990, 1772, 1836, 1923, 2080
BfmI	CTRYAG	3 cut(s)	921, 1061, 1083
BfuAI	ACCTGC	1 cut(s)	1067
BfuI	GTATCC	2 cut(s)	1471, 1700
BlnI	CCTAGG	1 cut(s)	989
Bme1390I	CCNGG	7 cut(s)	112, 465, 756, 1344, 1412, 1650, 1866
Bme18I	GGWCC	4 cut(s)	263, 690, 746, 1645
BmeT110I	CYCGRG	2 cut(s)	1701, 2001
BmgT120I	GGNCC	7 cut(s)	263, 377, 690, 746, 1295, 1382, 1645
BmrFI	CCNGG	7 cut(s)	112, 465, 756, 1344, 1412, 1650, 1866
BmsI	GCATC	7 cut(s)	40, 592, 916, 925, 931, 953, 1560
BmtI	GCTAGC	1 cut(s)	804
BpmI	CTGGAG	3 cut(s)	972, 1218, 1328
Bpu10I	CCTNAGC	1 cut(s)	1983
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	2 cut(s)	112, 1412
BsaAI	YACGTR	1 cut(s)	1872
BsaBI	GATNNNNATC	2 cut(s)	74, 2040
BsaWI	WCCGGW	1 cut(s)	1463
BsaXI	ACNNNNNCTCC	4 cut(s)	459, 489, 1198, 1228
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 117, 171, 442, 560, 755, 1811
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	4 cut(s)	223, 955, 1235, 1438
Bse3DI	GCAATG	8 cut(s)	316, 490, 496, 976, 1335, 1567, 1647, 2073
Bse8I	GATNNNNATC	2 cut(s)	74, 2040
BseAI	TCCGGA	1 cut(s)	1463
BseBI	CCWGG	5 cut(s)	465, 756, 1344, 1650, 1866
BseGI	GGATG	2 cut(s)	944, 1492
BseJI	GATNNNNATC	2 cut(s)	74, 2040
BseLI	CCNNNNNNNGG	7 cut(s)	88, 117, 171, 442, 560, 755, 1811
BseMI	GCAATG	8 cut(s)	316, 490, 496, 976, 1335, 1567, 1647, 2073
BseMII	CTCAG	2 cut(s)	52, 1472
BseNI	ACTGG	4 cut(s)	223, 955, 1235, 1438
BseRI	GAGGAG	2 cut(s)	504, 674
BseSI	GKGCMC	1 cut(s)	1454
BseYI	CCCAGC	2 cut(s)	1507, 1789
BsgI	GTGCAG	3 cut(s)	750, 1635, 1836
Bsh1236I	CGCG	1 cut(s)	408
BshFI	GGCC	5 cut(s)	229, 378, 550, 1297, 1384
BshNI	GGYRCC	1 cut(s)	1891
BsiHKAI	GWGCWC	2 cut(s)	1149, 1702
BsiHKCI	CYCGRG	2 cut(s)	1701, 2001
BsiSI	CCGG	4 cut(s)	112, 375, 1411, 1464
BslFI	GGGAC	4 cut(s)	254, 276, 772, 1740
BslI	CCNNNNNNNGG	7 cut(s)	88, 117, 171, 442, 560, 755, 1811
BsmAI	GTCTC	2 cut(s)	645, 1770
BsmFI	GGGAC	4 cut(s)	254, 276, 772, 1740
BsnI	GGCC	5 cut(s)	229, 378, 550, 1297, 1384
BsoBI	CYCGRG	2 cut(s)	1701, 2001
Bsp1286I	GDGCHC	5 cut(s)	982, 1149, 1454, 1508, 1702
Bsp13I	TCCGGA	1 cut(s)	1463
Bsp143I	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
Bsp19I	CCATGG	1 cut(s)	779
Bsp68I	TCGCGA	1 cut(s)	408
BspACI	CCGC	2 cut(s)	449, 1268
BspANI	GGCC	5 cut(s)	229, 378, 550, 1297, 1384
BspCNI	CTCAG	2 cut(s)	51, 1473
BspEI	TCCGGA	1 cut(s)	1463
BspFNI	CGCG	1 cut(s)	408
BspHI	TCATGA	1 cut(s)	1530
BspMAI	CTGCAG	2 cut(s)	925, 1065
BspMI	ACCTGC	1 cut(s)	1067
BspOI	GCTAGC	1 cut(s)	804
BspPI	GGATC	6 cut(s)	53, 66, 433, 980, 1130, 1867
BspQI	GCTCTTC	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	1891
BsrDI	GCAATG	8 cut(s)	316, 490, 496, 976, 1335, 1567, 1647, 2073
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	4 cut(s)	223, 955, 1235, 1438
BssAI	RCCGGY	1 cut(s)	374
BssMI	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
BssT1I	CCWWGG	3 cut(s)	501, 779, 989
Bst2UI	CCWGG	5 cut(s)	465, 756, 1344, 1650, 1866
Bst4CI	ACNGT	5 cut(s)	403, 620, 763, 793, 1831
Bst6I	CTCTTC	2 cut(s)	17, 1049
BstBAI	YACGTR	1 cut(s)	1872
BstC8I	GCNNGC	9 cut(s)	376, 548, 802, 868, 1061, 1065, 1263, 1314, 1450
BstDEI	CTNAG	4 cut(s)	38, 589, 1481, 1983
BstDSI	CCRYGG	2 cut(s)	441, 779
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	944, 1492
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	9 cut(s)	61, 428, 814, 915, 988, 1095, 1138, 1725, 1862
BstMAI	GTCTC	2 cut(s)	645, 1770
BstMBI	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
BstMWI	GCNNNNNNNGC	9 cut(s)	43, 371, 527, 602, 926, 935, 1073, 1267, 1613
BstNI	CCWGG	5 cut(s)	465, 756, 1344, 1650, 1866
BstNSI	RCATGY	2 cut(s)	1187, 1274
BstSCI	CCNGG	7 cut(s)	110, 463, 754, 1342, 1410, 1648, 1864
BstSFI	CTRYAG	3 cut(s)	921, 1061, 1083
BstSLI	GKGCMC	1 cut(s)	1454
BstUI	CGCG	1 cut(s)	408
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuI	GTATCC	2 cut(s)	1471, 1700
BsuRI	GGCC	5 cut(s)	229, 378, 550, 1297, 1384
BtgI	CCRYGG	2 cut(s)	441, 779
BtsCI	GGATG	2 cut(s)	944, 1492
BtsIMutI	CAGTG	3 cut(s)	399, 922, 948
BtuMI	TCGCGA	1 cut(s)	408
BveI	ACCTGC	1 cut(s)	1067
Cac8I	GCNNGC	9 cut(s)	376, 548, 802, 868, 1061, 1065, 1263, 1314, 1450
CaiI	CAGNNNCTG	1 cut(s)	1082
CciI	TCATGA	1 cut(s)	1530
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	7 cut(s)	263, 377, 690, 746, 1295, 1382, 1645
CseI	GACGC	1 cut(s)	1873
Csp6I	GTAC	2 cut(s)	346, 1873
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviQI	GTAC	2 cut(s)	346, 1873
DdeI	CTNAG	4 cut(s)	38, 589, 1481, 1983
DpnI	GATC	9 cut(s)	60, 427, 813, 914, 987, 1094, 1137, 1724, 1861
DpnII	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
EaeI	YGGCCR	2 cut(s)	227, 548
Eam1104I	CTCTTC	2 cut(s)	17, 1049
EarI	CTCTTC	2 cut(s)	17, 1049
Eco130I	CCWWGG	3 cut(s)	501, 779, 989
Eco24I	GRGCYC	2 cut(s)	982, 1508
Eco32I	GATATC	2 cut(s)	72, 1333
Eco47I	GGWCC	4 cut(s)	263, 690, 746, 1645
Eco57I	CTGAAG	2 cut(s)	141, 1392
Eco88I	CYCGRG	2 cut(s)	1701, 2001
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	3 cut(s)	263, 690, 1295
EcoRII	CCWGG	5 cut(s)	463, 754, 1342, 1648, 1864
EcoRV	GATATC	2 cut(s)	72, 1333
EcoT14I	CCWWGG	3 cut(s)	501, 779, 989
EcoT22I	ATGCAT	2 cut(s)	946, 2014
EcoT38I	GRGCYC	2 cut(s)	982, 1508
ErhI	CCWWGG	3 cut(s)	501, 779, 989
FaqI	GGGAC	4 cut(s)	254, 276, 772, 1740
FauI	CCCGC	1 cut(s)	442
FbaI	TGATCA	2 cut(s)	912, 1722
FokI	GGATG	2 cut(s)	931, 1479
FriOI	GRGCYC	2 cut(s)	982, 1508
FspBI	CTAG	8 cut(s)	47, 342, 801, 990, 1772, 1836, 1923, 2080
GsaI	CCCAGC	2 cut(s)	1511, 1793
GsuI	CTGGAG	3 cut(s)	972, 1218, 1328
HaeIII	GGCC	5 cut(s)	229, 378, 550, 1297, 1384
HapII	CCGG	4 cut(s)	112, 375, 1411, 1464
HgaI	GACGC	1 cut(s)	1873
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HindIII	AAGCTT	2 cut(s)	241, 1927
HinfI	GANTC	5 cut(s)	151, 161, 233, 1577, 2056
HpaII	CCGG	4 cut(s)	112, 375, 1411, 1464
HphI	GGTGA	4 cut(s)	1360, 1854, 1961, 2036
Hpy166II	GTNNAC	2 cut(s)	296, 822
Hpy188I	TCNGA	7 cut(s)	41, 160, 842, 1402, 1482, 1859, 2035
Hpy188III	TCNNGA	9 cut(s)	19, 407, 744, 815, 1025, 1307, 1464, 1496, 1531
Hpy8I	GTNNAC	2 cut(s)	296, 822
Hpy99I	CGWCG	2 cut(s)	394, 1178
HpyAV	CCTTC	7 cut(s)	165, 248, 282, 554, 703, 853, 1585
HpyCH4III	ACNGT	5 cut(s)	403, 620, 763, 793, 1831
HpyCH4IV	ACGT	1 cut(s)	1871
HpyF10VI	GCNNNNNNNGC	9 cut(s)	43, 371, 527, 602, 926, 935, 1073, 1267, 1613
HpyF3I	CTNAG	4 cut(s)	38, 589, 1481, 1983
HpySE526I	ACGT	1 cut(s)	1871
Kpn2I	TCCGGA	1 cut(s)	1463
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
Ksp22I	TGATCA	2 cut(s)	912, 1722
Kzo9I	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
LguI	GCTCTTC	1 cut(s)	1049
LmnI	GCTCC	7 cut(s)	863, 977, 1152, 1270, 1282, 1309, 1503
LweI	GCATC	7 cut(s)	40, 592, 916, 925, 931, 953, 1560
MaeI	CTAG	8 cut(s)	47, 342, 801, 990, 1772, 1836, 1923, 2080
MaeII	ACGT	1 cut(s)	1871
MaeIII	GTNAC	5 cut(s)	614, 787, 1825, 1831, 1846
MalI	GATC	9 cut(s)	60, 427, 813, 914, 987, 1094, 1137, 1724, 1861
MboI	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
MboII	GAAGA	8 cut(s)	34, 40, 70, 105, 203, 1066, 1295, 1851
MfeI	CAATTG	2 cut(s)	854, 1794
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	5 cut(s)	982, 1149, 1454, 1508, 1702
MlsI	TGGCCA	2 cut(s)	229, 550
MluNI	TGGCCA	2 cut(s)	229, 550
MlyI	GAGTC	3 cut(s)	155, 1571, 2065
MmeI	TCCRAC	2 cut(s)	955, 1837
Mox20I	TGGCCA	2 cut(s)	229, 550
Mph1103I	ATGCAT	2 cut(s)	946, 2014
MroI	TCCGGA	1 cut(s)	1463
MroNI	GCCGGC	1 cut(s)	374
MroXI	GAANNNNTTC	1 cut(s)	1961
MscI	TGGCCA	2 cut(s)	229, 550
MslI	CAYNNNNRTG	2 cut(s)	719, 1442
Msp20I	TGGCCA	2 cut(s)	229, 550
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	4 cut(s)	112, 375, 1411, 1464
MspR9I	CCNGG	7 cut(s)	112, 465, 756, 1344, 1412, 1650, 1866
MunI	CAATTG	2 cut(s)	854, 1794
MvaI	CCWGG	5 cut(s)	465, 756, 1344, 1650, 1866
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	9 cut(s)	43, 371, 527, 602, 926, 935, 1073, 1267, 1613
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	112, 1412
NcoI	CCATGG	1 cut(s)	779
NdeII	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
NgoMIV	GCCGGC	1 cut(s)	374
NheI	GCTAGC	1 cut(s)	800
NmuCI	GTSAC	2 cut(s)	614, 1825
NruI	TCGCGA	1 cut(s)	408
NsiI	ATGCAT	2 cut(s)	946, 2014
NspI	RCATGY	2 cut(s)	1187, 1274
PaeR7I	CTCGAG	2 cut(s)	1701, 2001
PagI	TCATGA	1 cut(s)	1530
PaqCI	CACCTGC	1 cut(s)	1067
PasI	CCCWGGG	1 cut(s)	1649
PciI	ACATGT	1 cut(s)	1183
PciSI	GCTCTTC	1 cut(s)	1049
PdiI	GCCGGC	1 cut(s)	376
PdmI	GAANNNNTTC	1 cut(s)	1961
PfeI	GAWTC	2 cut(s)	151, 233
PflFI	GACNNNGTC	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	463
PleI	GAGTC	3 cut(s)	155, 1571, 2064
PpsI	GAGTC	3 cut(s)	155, 1571, 2064
Ppu21I	YACGTR	1 cut(s)	1872
PpuMI	RGGWCCY	2 cut(s)	263, 690
PscI	ACATGT	1 cut(s)	1183
PsiI	TTATAA	1 cut(s)	1662
Psp5II	RGGWCCY	2 cut(s)	263, 690
Psp6I	CCWGG	5 cut(s)	463, 754, 1342, 1648, 1864
PspFI	CCCAGC	2 cut(s)	1507, 1789
PspGI	CCWGG	5 cut(s)	463, 754, 1342, 1648, 1864
PspPI	GGNCC	7 cut(s)	263, 377, 690, 746, 1295, 1382, 1645
PspPPI	RGGWCCY	2 cut(s)	263, 690
PspXI	VCTCGAGB	2 cut(s)	1701, 2001
PstI	CTGCAG	2 cut(s)	925, 1065
PstNI	CAGNNNCTG	1 cut(s)	1082
PsuI	RGATCY	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	734
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	2 cut(s)	347, 1874
RsaNI	GTAC	2 cut(s)	346, 1873
RseI	CAYNNNNRTG	2 cut(s)	719, 1442
SapI	GCTCTTC	1 cut(s)	1049
Sau3AI	GATC	9 cut(s)	58, 425, 811, 912, 985, 1092, 1135, 1722, 1859
Sau96I	GGNCC	7 cut(s)	263, 377, 690, 746, 1295, 1382, 1645
SbfI	CCTGCAGG	1 cut(s)	1065
SchI	GAGTC	3 cut(s)	155, 1571, 2065
ScrFI	CCNGG	7 cut(s)	112, 465, 756, 1344, 1412, 1650, 1866
SdaI	CCTGCAGG	1 cut(s)	1065
SduI	GDGCHC	5 cut(s)	982, 1149, 1454, 1508, 1702
SfaNI	GCATC	7 cut(s)	40, 592, 916, 925, 931, 953, 1560
SfcI	CTRYAG	3 cut(s)	921, 1061, 1083
Sfr274I	CTCGAG	2 cut(s)	1701, 2001
SinI	GGWCC	4 cut(s)	263, 690, 746, 1645
SlaI	CTCGAG	2 cut(s)	1701, 2001
SmiMI	CAYNNNNRTG	2 cut(s)	719, 1442
SmlI	CTYRAG	3 cut(s)	516, 1701, 2001
SmoI	CTYRAG	3 cut(s)	516, 1701, 2001
Sse8387I	CCTGCAGG	1 cut(s)	1065
SsiI	CCGC	2 cut(s)	449, 1268
SspMI	CTAG	8 cut(s)	47, 342, 801, 990, 1772, 1836, 1923, 2080
StyD4I	CCNGG	7 cut(s)	110, 463, 754, 1342, 1410, 1648, 1864
StyI	CCWWGG	3 cut(s)	501, 779, 989
TaaI	ACNGT	5 cut(s)	403, 620, 763, 793, 1831
TaiI	ACGT	1 cut(s)	1874
TaqI	TCGA	7 cut(s)	576, 624, 814, 984, 1024, 1702, 2002
TfiI	GAWTC	2 cut(s)	151, 233
TscAI	CASTG	3 cut(s)	406, 922, 955
TseFI	GTSAC	2 cut(s)	614, 1825
Tsp45I	GTSAC	2 cut(s)	614, 1825
TspDTI	ATGAA	6 cut(s)	267, 305, 1056, 1275, 1578, 1728
TspRI	CASTG	3 cut(s)	406, 922, 955
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	4 cut(s)	263, 690, 746, 1645
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	4 cut(s)	121, 963, 1687, 1934
XceI	RCATGY	2 cut(s)	1187, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1216
XhoI	CTCGAG	2 cut(s)	1701, 2001
XmaJI	CCTAGG	1 cut(s)	989
XmnI	GAANNNNTTC	1 cut(s)	1961
XspI	CTAG	8 cut(s)	47, 342, 801, 990, 1772, 1836, 1923, 2080
Zsp2I	ATGCAT	2 cut(s)	946, 2014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.