Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Forward (+)

20676661 .. 20680592

Gene Structure 3932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1099400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGAACAACGAAATCCAAATTCGAATTCGAATCCAAATCCTCTTGTTTCTTTCTTTTACATTTCTCCAAATACTTCCCATTTTTACACAAGAATTTGCATGTGACAATAGAGCTTCAGCAACTAGCCAATTTCCTTTCTGCAACACTTCCCTTCCTTATGAGACGCGAGCCAAGGACCTCGTGTCGCGCCTTACGCTCCAAGAAAAGGTGATACAGCTAGTAGATAAGAGCACAGGCATTGCTCGACTAGGTGTGCCAGCGTATGAGTGGTGGTCCGAGGCACTTCATGGCGTGTCTAATGTTGGCCCGGGAACTAGTTTTAATGGCACAGTGCCTGGTGCCACTAGTTTCCCAGCGGTGATTCTATCCGCTGCTAGTTTTAACCAATCACTGTGGCTAAAGATGGGCCAGGTTGTGTCAACTGAGGCTAGGGCCATGTACAATGTTGGCCTAGCCGGGTTGACATACTGGAGTCCTAATGTTAATGTGTTCCGCGACCCTAGATGGGGTCGCGGACAAGAAACACCTGGCGAAGACCCTCTGGTGGTGTCAGATTACGCGGTGAATTATGTCCGCGGTCTGCAAGAAGTGAGTGAAGGGAATAAGACTGGTGGTGATAGGCTGAAGGTCTCAAGCTGCTGCAAGCATTACACTGCTTATGATGTGGATAATTGGAAAGGAGTTGATCGATTTCACTTTGATGCACAGGTGACAGAGCAGGACATGGAGGATACATATCAGCCACCATTCAAAAGTTGTGTACAGGAGGGCCATGTAAGCAGTGTGATGTGTTCATACAATCGTGTCAACGGCGTTCCAACGTGCGCTGACCCGAACCTCCTCCAAGGGGTAGTTAGAGGTCAATGGGGTCTAGACGGATATATCGTTTCAGATTGCGACTCCATCGAAGTTTATTACAATGACATCCATTATACTGCAACACCTGAGGATGCAGTAGCCCTTGCCTTGAAAGCAGGTTTAAACATGAATTGTGGAGATTTTCTAGGATTATACACAGAGAATGCAGTGAGCTCAAAAAAAGTTGAAGAATCTGTGGTAGATCAGTCCTTGATATACAACTACATAGTCCTGATGAGGCTAGGCTTCTTTGATGGTGACCCAACATTGCTCCAATTCGGAAAGCTTGGCCCGTCTGATGTGTGCACCAAGGATCATAAAATGTTGGCACTTGATGCTGCTAAGCAGGGCATAGTTTTGCTTGACAACAAGGGAGGAGCTCTTCCATTGTCTAAAAATATAAAAAGCTTGGCTATTATTGGACCTAATGCAAATGCCACCACTGTTATGATAAGCAACTATGCTGGCATACCATGTAGCTACACTAGCCCTTTACAAGGAGTACAGAAGTATGTCCCTGCCGTGAAATATGCCCCGGGCTGCAACAATGTGAAATGTGCCGATGAGAGCCTCATTGGGGCTGCGGCTCAGGCCTCCGCCACAGCTGATGCAGTGGTGGTGGTAGTGGGACTTGATCAGTCCATTGAAGCTGAGGGGCTTGACAGAGAGAACTTGACATTGCCAGGGTTTCAGGAAAAGCTTGTGAACCAAGTGGTTAGTGCAGCAAAAGGAAAGGTCATTCTGGTAATTATGGCAGCTGGCCCAATTGATGTTTCTTTTGCCAAAAGTTTGAGCAAAATTGGGGGGATTCTATGGGTAGGGTATCCAGGTCAAGCTGGAGGAGATGCCATTGCTGAAGTCATATTTGGGGACCACAATCCAGCTGGAAGATCTCCTTTTACATGGTACCCAAAGGAATATGCAGATCAAGTGGCAATGACAGACATGAACATGAGAGCCAACACAAGCAGAAACTTCCCAGGGAGAACATACAGATTCTACACTGGAAAAACCGTCTATGAGTTTGGTCATGGTCTAAGCTATTCAAATTTCACCAAGTTCATAAAGTCTGCACCATCCTCAGTACTCATTCCCTCAACCCCAACTCATCATGTTAACCTTCTACTTTCCAACTCCACCACTCAACTGGACTCAGACCCTAACTCCGAAGGCAAACTAGTTGATGTATCAAAAGTACATTGCGCGAAATTAAATTTTAACCTTGTTGTCGGCGTGAAGAACAACGGGCCAAGGGACGGGGGTCATGTGGTGCTCGTGTTTTGGGAACCGGCAAGCTCAGGGAGGGTGATGGGAGCACCAAAGTTGCAGCTGGTGGAATTTAAAAGGGTGGAGGTGAAGAATGGAGAGACAAAGTATGTGACAATTGGGGTGGATGTGTGCAAGAGAATGAGCCTTGTGGATAGTGAAGGAAAGAGGAAGTTGGTAACTGGAAAACACACAATTGTGGTTGGTTCTCCTAGTGAGCGCCAAGTGAAGCACATTGTCGATGTCAAGGTGGCTGGAAAAGCAGAATTGAGGGAGGCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

803

Amino Acids

87.16

Weight (kDa)

6.42

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	113 - 355	6.4e-35	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	404 - 634	2e-51	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	708 - 778	1.4e-10	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	965
Acc65I	GGTACC	1 cut(s)	1764
AccB1I	GGYRCC	2 cut(s)	338, 1764
AccII	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
AciI	CCGC	9 cut(s)	356, 369, 493, 513, 560, 574, 576, 1442, 1455
AclWI	GGATC	1 cut(s)	1179
AcsI	RAATTY	6 cut(s)	18, 24, 92, 1906, 2071, 2195
AcuI	CTGAAG	3 cut(s)	99, 644, 1734
AfaI	GTAC	6 cut(s)	440, 762, 1362, 1766, 1944, 2055
AfiI	CCNNNNNNNGG	8 cut(s)	205, 505, 506, 544, 847, 1355, 1435, 2114
AgsI	TTSAA	5 cut(s)	751, 970, 1046, 1505, 1905
AhdI	GACNNNNNGTC	1 cut(s)	181
AhlI	ACTAGT	3 cut(s)	314, 344, 2035
AjnI	CCWGG	6 cut(s)	334, 408, 526, 1540, 1684, 1837
AjuI	GAANNNNNNNTTGG	6 cut(s)	9, 41, 1615, 1647, 1707, 1739
AleI	CACNNNNGTG	1 cut(s)	2321
Alw21I	GWGCWC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
Alw26I	GTCTC	3 cut(s)	155, 634, 2219
Alw44I	GTGCAC	1 cut(s)	1162
AlwI	GGATC	1 cut(s)	1179
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	2 cut(s)	307, 1393
ApaLI	GTGCAC	1 cut(s)	1162
ApeKI	GCWGC	9 cut(s)	371, 636, 639, 1196, 1398, 1439, 1580, 1613, 2185
ApoI	RAATTY	6 cut(s)	18, 24, 92, 1906, 2071, 2195
Asp718I	GGTACC	1 cut(s)	1764
AspLEI	GCGC	4 cut(s)	189, 827, 2063, 2346
AsuC2I	CCSGG	5 cut(s)	308, 309, 457, 1394, 1395
AsuHPI	GGTGA	9 cut(s)	220, 370, 574, 626, 721, 1127, 1903, 2176, 2224
AsuII	TTCGAA	2 cut(s)	22, 28
AvaI	CYCGRG	2 cut(s)	307, 1393
AvaII	GGWCC	4 cut(s)	175, 273, 1280, 1729
AxyI	CCTNAGG	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	1166
BanI	GGYRCC	2 cut(s)	338, 1764
BanII	GRGCYC	2 cut(s)	1034, 1240
BauI	CACGAG	2 cut(s)	179, 2132
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
BbvCI	CCTCAGC	1 cut(s)	1509
BbvI	GCAGC	9 cut(s)	358, 623, 626, 1183, 1385, 1426, 1592, 1625, 2197
BccI	CCATC	6 cut(s)	397, 498, 911, 1106, 1942, 2161
BceAI	ACGGC	2 cut(s)	826, 1364
BciT130I	CCWGG	6 cut(s)	336, 410, 528, 1542, 1686, 1839
BciVI	GTATCC	2 cut(s)	724, 1692
BclI	TGATCA	1 cut(s)	1492
BcnI	CCSGG	5 cut(s)	308, 309, 457, 1394, 1395
BcoDI	GTCTC	3 cut(s)	155, 634, 2219
BcuI	ACTAGT	3 cut(s)	314, 344, 2035
BfoI	RGCGCY	1 cut(s)	2347
BfuAI	ACCTGC	1 cut(s)	965
BfuI	GTATCC	2 cut(s)	724, 1692
BglII	AGATCT	1 cut(s)	1748
BlpI	GCTNAGC	1 cut(s)	1200
BmcAI	AGTACT	1 cut(s)	1944
Bme18I	GGWCC	4 cut(s)	175, 273, 1280, 1729
BmeRI	GACNNNNNGTC	1 cut(s)	181
BmeT110I	CYCGRG	2 cut(s)	307, 1393
BmiI	GGNNCC	4 cut(s)	340, 1730, 1766, 2145
BmsI	GCATC	5 cut(s)	691, 940, 1183, 1456, 1693
BoxI	GACNNNNGTC	1 cut(s)	2118
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	2 cut(s)	490, 1716
Bpu10I	CCTNAGC	3 cut(s)	1446, 1509, 2155
Bpu1102I	GCTNAGC	1 cut(s)	1200
Bpu14I	TTCGAA	2 cut(s)	22, 28
BpuEI	CTTGAG	1 cut(s)	616
BpuMI	CCSGG	5 cut(s)	308, 309, 457, 1394, 1395
Bsa29I	ATCGAT	1 cut(s)	688
BsaBI	GATNNNNATC	1 cut(s)	735
BsaI	GGTCTC	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	2006, 2036
Bsc4I	CCNNNNNNNGG	8 cut(s)	205, 505, 506, 544, 847, 1355, 1435, 2114
Bse118I	RCCGGY	1 cut(s)	2146
Bse1I	ACTGG	5 cut(s)	473, 613, 1867, 2010, 2311
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	6 cut(s)	237, 1124, 1535, 1707, 1800, 2056
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	6 cut(s)	336, 410, 528, 1542, 1686, 1839
BseCI	ATCGAT	1 cut(s)	688
BseGI	GGATG	4 cut(s)	924, 955, 1934, 2257
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	8 cut(s)	205, 505, 506, 544, 847, 1355, 1435, 2114
BseMI	GCAATG	6 cut(s)	237, 1124, 1535, 1707, 1800, 2056
BseMII	CTCAG	7 cut(s)	414, 936, 1460, 1500, 1953, 2025, 2169
BseNI	ACTGG	5 cut(s)	473, 613, 1867, 2010, 2311
BseRI	GAGGAG	3 cut(s)	830, 1248, 1713
BseSI	GKGCMC	1 cut(s)	1166
BseXI	GCAGC	9 cut(s)	358, 623, 626, 1183, 1385, 1426, 1592, 1625, 2197
BseYI	CCCAGC	1 cut(s)	352
BsgI	GTGCAG	2 cut(s)	1599, 1914
Bsh1236I	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
BshNI	GGYRCC	2 cut(s)	338, 1764
BshVI	ATCGAT	1 cut(s)	688
BsiHKAI	GWGCWC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
BsiHKCI	CYCGRG	2 cut(s)	307, 1393
BsiSI	CCGG	4 cut(s)	308, 456, 1394, 2147
BslFI	GGGAC	4 cut(s)	1358, 1500, 1742, 2126
BslI	CCNNNNNNNGG	8 cut(s)	205, 505, 506, 544, 847, 1355, 1435, 2114
BsmAI	GTCTC	3 cut(s)	155, 634, 2219
BsmBI	CGTCTC	1 cut(s)	155
BsmFI	GGGAC	4 cut(s)	1358, 1500, 1742, 2126
BsmI	GAATGC	1 cut(s)	1027
Bso31I	GGTCTC	1 cut(s)	634
BsoBI	CYCGRG	2 cut(s)	307, 1393
Bsp119I	TTCGAA	2 cut(s)	22, 28
Bsp1286I	GDGCHC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
Bsp1407I	TGTACA	2 cut(s)	438, 760
Bsp143I	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
Bsp1720I	GCTNAGC	1 cut(s)	1200
BspACI	CCGC	9 cut(s)	356, 369, 493, 513, 560, 574, 576, 1442, 1455
BspCNI	CTCAG	7 cut(s)	415, 937, 1459, 1501, 1952, 2024, 2168
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
BspLI	GGNNCC	4 cut(s)	340, 1730, 1766, 2145
BspMI	ACCTGC	1 cut(s)	965
BspPI	GGATC	1 cut(s)	1179
BspQI	GCTCTTC	1 cut(s)	1245
BspT104I	TTCGAA	2 cut(s)	22, 28
BspT107I	GGYRCC	2 cut(s)	338, 1764
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	6 cut(s)	237, 1124, 1535, 1707, 1800, 2056
BsrFI	RCCGGY	1 cut(s)	2146
BsrGI	TGTACA	2 cut(s)	438, 760
BsrI	ACTGG	5 cut(s)	473, 613, 1867, 2010, 2311
BssAI	RCCGGY	1 cut(s)	2146
BssMI	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
BssSI	CACGAG	2 cut(s)	179, 2132
BssT1I	CCWWGG	4 cut(s)	171, 844, 1167, 2108
Bst2BI	CACGAG	2 cut(s)	179, 2132
Bst2UI	CCWGG	6 cut(s)	336, 410, 528, 1542, 1686, 1839
Bst4CI	ACNGT	4 cut(s)	331, 393, 1303, 1873
Bst6I	CTCTTC	1 cut(s)	1245
BstAPI	GCANNNNNTGC	1 cut(s)	1193
BstAUI	TGTACA	2 cut(s)	438, 760
BstBI	TTCGAA	2 cut(s)	22, 28
BstC8I	GCNNGC	6 cut(s)	168, 258, 644, 1324, 1618, 2152
BstDEI	CTNAG	9 cut(s)	423, 945, 1200, 1446, 1509, 1895, 1939, 2011, 2155
BstDSI	CCRYGG	1 cut(s)	574
BstEII	GGTNACC	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	1353
BstF5I	GGATG	4 cut(s)	924, 955, 1934, 2257
BstFNI	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
BstH2I	RGCGCY	1 cut(s)	2347
BstHHI	GCGC	4 cut(s)	189, 827, 2063, 2346
BstKTI	GATC	6 cut(s)	688, 1063, 1174, 1495, 1751, 1786
BstMAI	GTCTC	3 cut(s)	155, 634, 2219
BstMBI	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
BstMWI	GCNNNNNNNGC	7 cut(s)	193, 777, 971, 1193, 1344, 1448, 2384
BstNI	CCWGG	6 cut(s)	336, 410, 528, 1542, 1686, 1839
BstNSI	RCATGY	1 cut(s)	102
BstPAI	GACNNNNGTC	1 cut(s)	2118
BstPI	GGTNACC	1 cut(s)	1115
BstSLI	GKGCMC	1 cut(s)	1166
BstUI	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
BstV1I	GCAGC	9 cut(s)	358, 623, 626, 1183, 1385, 1426, 1592, 1625, 2197
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	1748
BstXI	CCANNNNNNTGG	1 cut(s)	2005
BstYI	RGATCY	1 cut(s)	1748
Bsu15I	ATCGAT	1 cut(s)	688
Bsu36I	CCTNAGG	1 cut(s)	945
BsuI	GTATCC	2 cut(s)	724, 1692
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	924, 955, 1934, 2257
BtsI	GCAGTG	4 cut(s)	651, 787, 1032, 1476
BtsIMutI	CAGTG	8 cut(s)	336, 389, 651, 787, 1032, 1299, 1476, 1860
BveI	ACCTGC	1 cut(s)	965
Cac8I	GCNNGC	6 cut(s)	168, 258, 644, 1324, 1618, 2152
CaiI	CAGNNNCTG	1 cut(s)	335
CfoI	GCGC	4 cut(s)	189, 827, 2063, 2346
Cfr10I	RCCGGY	1 cut(s)	2146
Cfr42I	CCGCGG	1 cut(s)	577
Cfr9I	CCCGGG	2 cut(s)	307, 1393
ClaI	ATCGAT	1 cut(s)	688
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	6 cut(s)	439, 761, 1361, 1765, 1943, 2054
CspCI	CAANNNNNGTGG	4 cut(s)	374, 409, 2229, 2264
CviQI	GTAC	6 cut(s)	439, 761, 1361, 1765, 1943, 2054
DdeI	CTNAG	9 cut(s)	423, 945, 1200, 1446, 1509, 1895, 1939, 2011, 2155
DpnI	GATC	6 cut(s)	687, 1062, 1173, 1494, 1750, 1785
DpnII	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
DraI	TTTAAA	2 cut(s)	981, 2200
DriI	GACNNNNNGTC	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	1245
Eam1105I	GACNNNNNGTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	1245
EciI	GGCGGA	1 cut(s)	1444
Ecl136II	GAGCTC	2 cut(s)	1032, 1238
Eco130I	CCWWGG	4 cut(s)	171, 844, 1167, 2108
Eco147I	AGGCCT	2 cut(s)	1451, 2402
Eco24I	GRGCYC	2 cut(s)	1034, 1240
Eco31I	GGTCTC	1 cut(s)	634
Eco47I	GGWCC	4 cut(s)	175, 273, 1280, 1729
Eco53kI	GAGCTC	2 cut(s)	1032, 1238
Eco57I	CTGAAG	3 cut(s)	99, 644, 1734
Eco81I	CCTNAGG	1 cut(s)	945
Eco88I	CYCGRG	2 cut(s)	307, 1393
Eco91I	GGTNACC	1 cut(s)	1115
EcoICRI	GAGCTC	2 cut(s)	1032, 1238
EcoNI	CCTNNNNNAGG	1 cut(s)	1353
EcoO109I	RGGNCCY	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	1115
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	6 cut(s)	334, 408, 526, 1540, 1684, 1837
EcoT14I	CCWWGG	4 cut(s)	171, 844, 1167, 2108
EcoT38I	GRGCYC	2 cut(s)	1034, 1240
ErhI	CCWWGG	4 cut(s)	171, 844, 1167, 2108
Esp3I	CGTCTC	1 cut(s)	155
FalI	AAGNNNNNCTT	2 cut(s)	1738, 1770
FaqI	GGGAC	4 cut(s)	1358, 1500, 1742, 2126
FbaI	TGATCA	1 cut(s)	1492
FokI	GGATG	4 cut(s)	911, 962, 1921, 2264
FriOI	GRGCYC	2 cut(s)	1034, 1240
GlaI	GCGC	4 cut(s)	188, 826, 2062, 2345
GsaI	CCCAGC	1 cut(s)	356
GsuI	CTGGAG	2 cut(s)	490, 1716
HaeII	RGCGCY	1 cut(s)	2347
HapII	CCGG	4 cut(s)	308, 456, 1394, 2147
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	4 cut(s)	189, 827, 2063, 2346
Hin6I	GCGC	4 cut(s)	187, 825, 2061, 2344
HinP1I	GCGC	4 cut(s)	187, 825, 2061, 2344
HincII	GTYRAC	4 cut(s)	420, 462, 808, 1975
HindII	GTYRAC	4 cut(s)	420, 462, 808, 1975
HindIII	AAGCTT	3 cut(s)	1142, 1264, 1556
HinfI	GANTC	8 cut(s)	30, 361, 472, 899, 1049, 1666, 1854, 2009
HpaI	GTTAAC	1 cut(s)	1975
HpaII	CCGG	4 cut(s)	308, 456, 1394, 2147
HphI	GGTGA	9 cut(s)	220, 370, 574, 626, 721, 1127, 1903, 2176, 2224
Hpy166II	GTNNAC	7 cut(s)	420, 462, 761, 808, 1164, 1564, 1975
Hpy188I	TCNGA	7 cut(s)	277, 553, 892, 1139, 1156, 2014, 2026
Hpy188III	TCNNGA	3 cut(s)	872, 1090, 1550
Hpy8I	GTNNAC	7 cut(s)	420, 462, 761, 808, 1164, 1564, 1975
HpyAV	CCTTC	6 cut(s)	161, 590, 619, 1988, 2021, 2279
HpyCH4III	ACNGT	4 cut(s)	331, 393, 1303, 1873
HpyCH4IV	ACGT	1 cut(s)	821
HpyF10VI	GCNNNNNNNGC	7 cut(s)	193, 777, 971, 1193, 1344, 1448, 2384
HpyF3I	CTNAG	9 cut(s)	423, 945, 1200, 1446, 1509, 1895, 1939, 2011, 2155
HpySE526I	ACGT	1 cut(s)	821
HspAI	GCGC	4 cut(s)	187, 825, 2061, 2344
KpnI	GGTACC	1 cut(s)	1768
Ksp22I	TGATCA	1 cut(s)	1492
KspAI	GTTAAC	1 cut(s)	1975
KspI	CCGCGG	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
LguI	GCTCTTC	1 cut(s)	1245
LmnI	GCTCC	4 cut(s)	201, 1134, 1235, 2171
Lsp1109I	GCAGC	9 cut(s)	358, 623, 626, 1183, 1385, 1426, 1592, 1625, 2197
LweI	GCATC	5 cut(s)	691, 940, 1183, 1456, 1693
MaeII	ACGT	1 cut(s)	821
MaeIII	GTNAC	5 cut(s)	101, 709, 1115, 2236, 2302
MalI	GATC	6 cut(s)	687, 1062, 1173, 1494, 1750, 1785
MboI	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
MboII	GAAGA	6 cut(s)	545, 1058, 1232, 1758, 2107, 2227
MfeI	CAATTG	3 cut(s)	1623, 2241, 2319
MflI	RGATCY	1 cut(s)	1748
MhlI	GDGCHC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
MlyI	GAGTC	3 cut(s)	481, 893, 2003
MmeI	TCCRAC	2 cut(s)	842, 2013
MseI	TTAA	9 cut(s)	321, 381, 483, 980, 1974, 2069, 2076, 2199, 2407
MslI	CAYNNNNRTG	4 cut(s)	699, 1304, 1808, 2321
MspA1I	CMGCKG	7 cut(s)	356, 371, 576, 1463, 1616, 1742, 2188
MspI	CCGG	4 cut(s)	308, 456, 1394, 2147
MssI	GTTTAAAC	1 cut(s)	981
MunI	CAATTG	3 cut(s)	1623, 2241, 2319
Mva1269I	GAATGC	1 cut(s)	1027
MvaI	CCWGG	6 cut(s)	336, 410, 528, 1542, 1686, 1839
MvnI	CGCG	7 cut(s)	166, 187, 495, 513, 560, 576, 2063
MwoI	GCNNNNNNNGC	7 cut(s)	193, 777, 971, 1193, 1344, 1448, 2384
NciI	CCSGG	5 cut(s)	308, 309, 457, 1394, 1395
NdeII	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
NlaIV	GGNNCC	4 cut(s)	340, 1730, 1766, 2145
NmuCI	GTSAC	4 cut(s)	101, 709, 1115, 2236
NspI	RCATGY	1 cut(s)	102
NspV	TTCGAA	2 cut(s)	22, 28
OliI	CACNNNNGTG	1 cut(s)	2321
PasI	CCCWGGG	1 cut(s)	1838
PceI	AGGCCT	2 cut(s)	1451, 2402
PciSI	GCTCTTC	1 cut(s)	1245
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PctI	GAATGC	1 cut(s)	1027
PfeI	GAWTC	5 cut(s)	30, 361, 1049, 1666, 1854
PleI	GAGTC	3 cut(s)	480, 893, 2003
PmeI	GTTTAAAC	1 cut(s)	981
PpsI	GAGTC	3 cut(s)	480, 893, 2003
PpuMI	RGGWCCY	1 cut(s)	175
PshAI	GACNNNNGTC	1 cut(s)	2118
Psp124BI	GAGCTC	2 cut(s)	1034, 1240
Psp5II	RGGWCCY	1 cut(s)	175
Psp6I	CCWGG	6 cut(s)	334, 408, 526, 1540, 1684, 1837
PspEI	GGTNACC	1 cut(s)	1115
PspFI	CCCAGC	1 cut(s)	352
PspGI	CCWGG	6 cut(s)	334, 408, 526, 1540, 1684, 1837
PspN4I	GGNNCC	4 cut(s)	340, 1730, 1766, 2145
PspPPI	RGGWCCY	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	1748
PvuII	CAGCTG	4 cut(s)	1463, 1616, 1742, 2188
RsaI	GTAC	6 cut(s)	440, 762, 1362, 1766, 1944, 2055
RsaNI	GTAC	6 cut(s)	439, 761, 1361, 1765, 1943, 2054
RseI	CAYNNNNRTG	4 cut(s)	699, 1304, 1808, 2321
SacI	GAGCTC	2 cut(s)	1034, 1240
SacII	CCGCGG	1 cut(s)	577
SapI	GCTCTTC	1 cut(s)	1245
SaqAI	TTAA	9 cut(s)	321, 381, 483, 980, 1974, 2069, 2076, 2199, 2407
Sau3AI	GATC	6 cut(s)	685, 1060, 1171, 1492, 1748, 1783
ScaI	AGTACT	1 cut(s)	1944
SchI	GAGTC	3 cut(s)	481, 893, 2003
SduI	GDGCHC	6 cut(s)	233, 1034, 1166, 1240, 2133, 2176
SfaNI	GCATC	5 cut(s)	691, 940, 1183, 1456, 1693
Sfr303I	CCGCGG	1 cut(s)	577
SfuI	TTCGAA	2 cut(s)	22, 28
SgrBI	CCGCGG	1 cut(s)	577
SinI	GGWCC	4 cut(s)	175, 273, 1280, 1729
SmaI	CCCGGG	2 cut(s)	309, 1395
SmiMI	CAYNNNNRTG	4 cut(s)	699, 1304, 1808, 2321
SmlI	CTYRAG	1 cut(s)	631
SmoI	CTYRAG	1 cut(s)	631
SpeI	ACTAGT	3 cut(s)	314, 344, 2035
SseBI	AGGCCT	2 cut(s)	1451, 2402
SsiI	CCGC	9 cut(s)	356, 369, 493, 513, 560, 574, 576, 1442, 1455
SstI	GAGCTC	2 cut(s)	1034, 1240
StuI	AGGCCT	2 cut(s)	1451, 2402
StyI	CCWWGG	4 cut(s)	171, 844, 1167, 2108
TaaI	ACNGT	4 cut(s)	331, 393, 1303, 1873
TaiI	ACGT	1 cut(s)	824
TaqI	TCGA	6 cut(s)	22, 28, 244, 688, 906, 2364
TatI	WGTACW	5 cut(s)	438, 760, 1360, 1942, 2053
TauI	GCSGC	1 cut(s)	1445
TfiI	GAWTC	5 cut(s)	30, 361, 1049, 1666, 1854
Tru1I	TTAA	9 cut(s)	321, 381, 483, 980, 1974, 2069, 2076, 2199, 2407
Tru9I	TTAA	9 cut(s)	321, 381, 483, 980, 1974, 2069, 2076, 2199, 2407
TscAI	CASTG	8 cut(s)	336, 396, 658, 787, 1032, 1306, 1476, 1867
TseFI	GTSAC	4 cut(s)	101, 709, 1115, 2236
TseI	GCWGC	9 cut(s)	371, 636, 639, 1196, 1398, 1439, 1580, 1613, 2185
Tsp45I	GTSAC	4 cut(s)	101, 709, 1115, 2236
TspDTI	ATGAA	6 cut(s)	17, 275, 783, 1001, 1820, 1909
TspGWI	ACGGA	1 cut(s)	891
TspMI	CCCGGG	2 cut(s)	307, 1393
TspRI	CASTG	8 cut(s)	336, 396, 658, 787, 1032, 1306, 1476, 1867
VneI	GTGCAC	1 cut(s)	1162
VpaK11BI	GGWCC	4 cut(s)	175, 273, 1280, 1729
XagI	CCTNNNNNAGG	1 cut(s)	1353
XapI	RAATTY	6 cut(s)	18, 24, 92, 1906, 2071, 2195
XbaI	TCTAGA	1 cut(s)	871
XceI	RCATGY	1 cut(s)	102
XcmI	CCANNNNNNNNNTGG	3 cut(s)	264, 1739, 2002
XmaI	CCCGGG	2 cut(s)	307, 1393
ZrmI	AGTACT	1 cut(s)	1944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.