Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Forward (+)

8740599 .. 8743624

Gene Structure 3026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G005440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGAAGAACCAAGTACTTCTCTTGCATCTTTCACTATCAGTATTTCTCCTAATAGTTCCCATTGTAGCTCAACAATTTGCATGTGACACCAAAGCTTCCACAACTAGCCAATTTCCTTTTGACTTGGTCTCGCGCCTCACTCTTCAAGAAAAGGTCCAACAACTAGTGGATGCCTCCACAGGCATTTCTCGGCTAGGCGTGCCTAAATATGAGTGGTGGTCCGAGGCACTCCATGGTGTTTCGAACGTTGGCCCAGGCACTCGCTTTAATGCCACGGTGCCTGGTGCCACTAGTTTCCCAGCAGTGATTCTATCAGCAGCGAGTTTTAATGAATCACTATGGTTGAGGATGGGGCAAGTTGTGTCAACCGAGGCTCGAGCCATGTACAATTTGGGTCTAGCCGGGTTGACATTTTGGAGTCCTAATGTCAATGTGGTCCGTGACCCGAGATGGGGTCGAACGCAAGAGACACCGGGGGAGGACCCCTTAGTGGTGTCAAATTATGCAGTGAACTATGTCAAGGGTCTCCAAGACGTTGGTGAGGGCAATGCCACTGGTGACAAGCTCAAGGTCTCAAGCTGCTGCAAGCATTACACTGCTTATGATATTGATAATTGGAAAGGTGTTGATAGATTTCACTTTGATGCTCAGGTGACAAAACAGGACATGGAGGATACATTCCAGCCGCCATTCAAAAGTTGTGTGCAGGAGGGCCATGTTAGCAGTGTCATGTGTTCATATAATAGGGTGAATGGGATTCCCACCTGTGCTGACCCAGACCTGCTTCAAGGGGTAGTCAGAGGCCAATGGGGTCTAGATGGATATATAGTTTCTGACTGTGATTCTGTGGAAGTTTATTACGATGCAATCCATTATACTGAAACACGTGAGGATGCAGCAGCCCTGGCCCTGAAAGCAGGTCTAAACATGAACTGTGGGGATTATCTAGGGAAGTACACAGAGAATGCAGTCAACTTGAAGAAAGTGGAAGAATCTGTTGTTGATCAGTCCTTGATATACAACTACATAGTCCTCATGAGGCTTGGCTTCTTTGACGGTGATCCGAAACTGCTTGAATTCGGAAACCTTGGGGCATCGGATGTTTGCAGTGACGAACATAAAGCGTTGGCACTTGACGCTGCTAAGCAGGGCATAGTTTTGCTAGATAACAATAGAGCTCTTCCTTTGTCCCTTACTACGACCAAGAATTTGGCCATTATTGGACCTAATGCAAATGCCACTACGGTTATGATAAGCAACTATGCTGGAATACCATGTAGTTACACTAGTCCTCTACAAGGGCTACAAAAGTATGTGTCGACCGCAAAATATGAGCCCGGGTGTAGCAGTGTAAAATGTGCTGATGAGAGCCTCATTGGGGCAGCGGTTCAGGCTGCTGCCACAGCTGATGCAGTGGTGTTAGTAGTGGGGCTAGATCAGTCTGTTGAAGCAGAAGGTCTAGACAGAGAGAACTTGACTCTACCAGGCTTTCAGGAAAAGCTTGTGGAGCAAGTTGTTGATGCAACAAATGGAACAGTCATTCTGGTCATTATGTCAGCTGGTCCAATTGATGTTTCGTTTGCTAAAAATTTGAGCAAAGTAGGAGGGATTCTATGGGTTGGGTATCCAGGTCAAGAGGGAGGAGATGCCATAGCTCAAGTCATATTTGGGACTATAATCCAGGTAACATTCTCTTCTGGGAAGAGTCCTTTTACATGGTACCCACAGGAGTATGTAGACCAGGTGCCAATGACAGACATGAACATGAGGGCCAACACTAGTAGAAACTATCCTGGAAGAACATATAGGTTCTACACCGGAAAAACCGTCTATGAGTTTGGTCACGGGCTCAGCTATTCAACGTTTTCTAAGTTCATAATCCATGCGCCTTCCACCCTACTCATCCAGCCAAACTCCACTATTACTTTCAACCCACACAATAACATTCAATTGGAACCCATCTCCGGCACTACCCAAGAAATTGACATATCAAGCATAGATTGCCAGAGTTCAGCATTTGATCTAGTTGTTGGGGTGAGGAACAAAGGGCCAATGGATGGCTCCCACGTGGTGCTCGCTTTTTGGAAACCACCACGCTCACAAGGGTTGATTGGGGCACCAAAGTTGCAGCTTGTGGGTTTTGAAAGAGTGGAGGTGAAGAATAGAGAGACAAAGCCATTGACAATGAGGGTGGATGTGTGCAAGGGACTGAACCTTGTGGATAGTGAAGGGAAGAGGAAGTTAGTCACTGGGCTGCACACGATTCTCGTCGGCTCTCCCAGTGAGCAACAAGTGAAGCACTACCTCAATGTTAGGCTGGCTGAGAAACATGAACTGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

780

Amino Acids

85.08

Weight (kDa)

5.44

Isoelectric Point (pI)

31.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	95 - 337	4.5e-34	Glycosyl hydrolase family 3 N terminal domain
Glyco_hydro_3_C	PF01915	385 - 619	3.4e-46	Glycosyl hydrolase family 3 C-terminal domain
Fn3-like	PF14310	689 - 759	1.8e-09	Fibronectin type III-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	789, 908
Acc65I	GGTACC	1 cut(s)	1719
AccB1I	GGYRCC	5 cut(s)	277, 284, 1719, 1744, 2116
AccB7I	CCANNNNNTGG	1 cut(s)	2057
AccI	GTMKAC	2 cut(s)	1319, 1737
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	686, 1323, 1385
AclI	AACGTT	2 cut(s)	246, 1862
AclWI	GGATC	1 cut(s)	1055
AcoI	YGGCCR	1 cut(s)	1212
AcsI	RAATTY	3 cut(s)	1076, 1207, 1588
AcvI	CACGTG	2 cut(s)	887, 2068
AdeI	CACNNNGTG	1 cut(s)	2071
AfaI	GTAC	4 cut(s)	15, 386, 956, 1721
AfiI	CCNNNNNNNGG	7 cut(s)	451, 452, 490, 1298, 1378, 1964, 2057
AflIII	ACRYGT	1 cut(s)	884
AhlI	ACTAGT	4 cut(s)	163, 290, 1286, 1778
AjnI	CCWGG	8 cut(s)	253, 280, 903, 1483, 1627, 1680, 1740, 1792
AjuI	GAANNNNNNNTTGG	2 cut(s)	1558, 1590
Alw21I	GWGCWC	2 cut(s)	1180, 2076
Alw26I	GTCTC	5 cut(s)	133, 461, 530, 577, 2162
AlwI	GGATC	1 cut(s)	1055
Ama87I	CYCGRG	3 cut(s)	375, 445, 1337
AoxI	GGCC	7 cut(s)	250, 712, 802, 906, 1212, 1770, 2048
ApoI	RAATTY	3 cut(s)	1076, 1207, 1588
ArsI	GACNNNNNNTTYG	2 cut(s)	1192, 1224
Asp718I	GGTACC	1 cut(s)	1719
AspLEI	GCGC	2 cut(s)	135, 1888
AsuC2I	CCSGG	4 cut(s)	403, 474, 1338, 1339
AsuHPI	GGTGA	7 cut(s)	551, 569, 664, 760, 1070, 2047, 2167
AsuII	TTCGAA	1 cut(s)	242
AvaI	CYCGRG	3 cut(s)	375, 445, 1337
AvaII	GGWCC	6 cut(s)	154, 219, 436, 481, 1223, 1562
BaeGI	GKGCMC	1 cut(s)	2119
BalI	TGGCCA	1 cut(s)	1214
BanI	GGYRCC	5 cut(s)	277, 284, 1719, 1744, 2116
BanII	GRGCYC	3 cut(s)	1180, 1338, 1851
BbrPI	CACGTG	2 cut(s)	887, 2068
Bbv12I	GWGCWC	2 cut(s)	1180, 2076
BccI	CCATC	5 cut(s)	343, 444, 812, 1967, 2051
BciT130I	CCWGG	8 cut(s)	255, 282, 905, 1485, 1629, 1682, 1742, 1794
BciVI	GTATCC	2 cut(s)	667, 1635
BclI	TGATCA	1 cut(s)	1003
BcnI	CCSGG	4 cut(s)	403, 474, 1338, 1339
BcoDI	GTCTC	5 cut(s)	133, 461, 530, 577, 2162
BcuI	ACTAGT	4 cut(s)	163, 290, 1286, 1778
BfuAI	ACCTGC	2 cut(s)	789, 908
BfuI	GTATCC	2 cut(s)	667, 1635
BlpI	GCTNAGC	2 cut(s)	1143, 1850
BmcAI	AGTACT	1 cut(s)	15
Bme18I	GGWCC	6 cut(s)	154, 219, 436, 481, 1223, 1562
BmeT110I	CYCGRG	3 cut(s)	375, 445, 1337
BmiI	GGNNCC	8 cut(s)	279, 286, 483, 1721, 1746, 1956, 2062, 2118
BmrI	ACTGGG	2 cut(s)	2259, 2274
BmsI	GCATC	9 cut(s)	34, 160, 634, 853, 883, 1103, 1399, 1510, 1636
BmuI	ACTGGG	2 cut(s)	2259, 2274
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	2 cut(s)	1143, 1850
Bpu14I	TTCGAA	1 cut(s)	242
BpuEI	CTTGAG	3 cut(s)	551, 559, 1641
BpuMI	CCSGG	4 cut(s)	403, 474, 1338, 1339
BsaAI	YACGTR	2 cut(s)	887, 2068
BsaI	GGTCTC	3 cut(s)	133, 530, 577
BsaJI	CCNNGG	9 cut(s)	222, 232, 253, 273, 369, 473, 903, 1087, 1337
BsaWI	WCCGGW	1 cut(s)	1817
Bsc4I	CCNNNNNNNGG	7 cut(s)	451, 452, 490, 1298, 1378, 1964, 2057
Bse1I	ACTGG	3 cut(s)	559, 2254, 2280
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	8 cut(s)	255, 282, 905, 1485, 1629, 1682, 1742, 1794
BseDI	CCNNGG	9 cut(s)	222, 232, 253, 273, 369, 473, 903, 1087, 1337
BseGI	GGATG	7 cut(s)	175, 354, 898, 1105, 1902, 2062, 2200
BseLI	CCNNNNNNNGG	7 cut(s)	451, 452, 490, 1298, 1378, 1964, 2057
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	3 cut(s)	662, 1864, 2313
BseNI	ACTGG	3 cut(s)	559, 2254, 2280
BseRI	GAGGAG	1 cut(s)	1656
BseSI	GKGCMC	1 cut(s)	2119
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	2 cut(s)	725, 2240
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	1323
BshFI	GGCC	7 cut(s)	252, 714, 804, 908, 1214, 1772, 2050
BshNI	GGYRCC	5 cut(s)	277, 284, 1719, 1744, 2116
BsiEI	CGRYCG	1 cut(s)	1323
BsiHKAI	GWGCWC	2 cut(s)	1180, 2076
BsiHKCI	CYCGRG	3 cut(s)	375, 445, 1337
BsiSI	CCGG	5 cut(s)	402, 473, 1338, 1818, 1965
BslFI	GGGAC	3 cut(s)	1174, 1684, 2220
BslI	CCNNNNNNNGG	7 cut(s)	451, 452, 490, 1298, 1378, 1964, 2057
BsmAI	GTCTC	5 cut(s)	133, 461, 530, 577, 2162
BsmFI	GGGAC	3 cut(s)	1174, 1684, 2220
BsmI	GAATGC	1 cut(s)	970
BsnI	GGCC	7 cut(s)	252, 714, 804, 908, 1214, 1772, 2050
Bso31I	GGTCTC	3 cut(s)	133, 530, 577
BsoBI	CYCGRG	3 cut(s)	375, 445, 1337
Bsp119I	TTCGAA	1 cut(s)	242
Bsp1286I	GDGCHC	5 cut(s)	1180, 1338, 1851, 2076, 2119
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	1003, 1060, 1435, 2020
Bsp1720I	GCTNAGC	2 cut(s)	1143, 1850
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	3 cut(s)	686, 1323, 1385
BspANI	GGCC	7 cut(s)	252, 714, 804, 908, 1214, 1772, 2050
BspCNI	CTCAG	3 cut(s)	661, 1863, 2314
BspFNI	CGCG	1 cut(s)	133
BspHI	TCATGA	1 cut(s)	1035
BspLI	GGNNCC	8 cut(s)	279, 286, 483, 1721, 1746, 1956, 2062, 2118
BspMI	ACCTGC	2 cut(s)	789, 908
BspPI	GGATC	1 cut(s)	1055
BspQI	GCTCTTC	1 cut(s)	1185
BspT104I	TTCGAA	1 cut(s)	242
BspT107I	GGYRCC	5 cut(s)	277, 284, 1719, 1744, 2116
BspTNI	GGTCTC	3 cut(s)	133, 530, 577
BsrDI	GCAATG	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	3 cut(s)	559, 2254, 2280
BssECI	CCNNGG	9 cut(s)	222, 232, 253, 273, 369, 473, 903, 1087, 1337
BssMI	GATC	4 cut(s)	1003, 1060, 1435, 2020
BssT1I	CCWWGG	2 cut(s)	232, 1087
Bst2UI	CCWGG	8 cut(s)	255, 282, 905, 1485, 1629, 1682, 1742, 1794
Bst4CI	ACNGT	7 cut(s)	277, 839, 935, 1058, 1246, 1537, 1828
Bst6I	CTCTTC	5 cut(s)	147, 1185, 1697, 1699, 2228
BstAPI	GCANNNNNTGC	1 cut(s)	2001
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	2 cut(s)	887, 2068
BstBI	TTCGAA	1 cut(s)	242
BstC8I	GCNNGC	4 cut(s)	200, 587, 2076, 2319
BstDEI	CTNAG	6 cut(s)	487, 648, 1143, 1850, 1869, 2322
BstDSI	CCRYGG	2 cut(s)	232, 273
BstENI	CCTNNNNNAGG	1 cut(s)	1296
BstF5I	GGATG	7 cut(s)	175, 354, 898, 1105, 1902, 2062, 2200
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	2 cut(s)	135, 1888
BstKTI	GATC	4 cut(s)	1006, 1063, 1438, 2023
BstMAI	GTCTC	5 cut(s)	133, 461, 530, 577, 2162
BstMBI	GATC	4 cut(s)	1003, 1060, 1435, 2020
BstMCI	CGRYCG	1 cut(s)	1323
BstMWI	GCNNNNNNNGC	9 cut(s)	199, 720, 905, 914, 1136, 1391, 1403, 1507, 2001
BstNI	CCWGG	8 cut(s)	255, 282, 905, 1485, 1629, 1682, 1742, 1794
BstNSI	RCATGY	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	2119
BstUI	CGCG	1 cut(s)	133
BstXI	CCANNNNNNTGG	2 cut(s)	536, 1210
BsuI	GTATCC	2 cut(s)	667, 1635
BsuRI	GGCC	7 cut(s)	252, 714, 804, 908, 1214, 1772, 2050
BtgI	CCRYGG	2 cut(s)	232, 273
BtsCI	GGATG	7 cut(s)	175, 354, 898, 1105, 1902, 2062, 2200
BtsI	GCAGTG	7 cut(s)	309, 513, 594, 730, 1114, 1354, 1419
BveI	ACCTGC	2 cut(s)	789, 908
Cac8I	GCNNGC	4 cut(s)	200, 587, 2076, 2319
CciI	TCATGA	1 cut(s)	1035
CfoI	GCGC	2 cut(s)	135, 1888
Cfr9I	CCCGGG	1 cut(s)	1337
CseI	GACGC	1 cut(s)	1145
CsiI	ACCWGGT	1 cut(s)	1740
Csp6I	GTAC	4 cut(s)	14, 385, 955, 1720
CspCI	CAANNNNNGTGG	2 cut(s)	2172, 2207
CviQI	GTAC	4 cut(s)	14, 385, 955, 1720
DdeI	CTNAG	6 cut(s)	487, 648, 1143, 1850, 1869, 2322
DpnI	GATC	4 cut(s)	1005, 1062, 1437, 2022
DpnII	GATC	4 cut(s)	1003, 1060, 1435, 2020
DraIII	CACNNNGTG	1 cut(s)	2071
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	5 cut(s)	147, 1185, 1697, 1699, 2228
EarI	CTCTTC	5 cut(s)	147, 1185, 1697, 1699, 2228
Ecl136II	GAGCTC	1 cut(s)	1178
Eco130I	CCWWGG	2 cut(s)	232, 1087
Eco24I	GRGCYC	3 cut(s)	1180, 1338, 1851
Eco31I	GGTCTC	3 cut(s)	133, 530, 577
Eco47I	GGWCC	6 cut(s)	154, 219, 436, 481, 1223, 1562
Eco53kI	GAGCTC	1 cut(s)	1178
Eco72I	CACGTG	2 cut(s)	887, 2068
Eco88I	CYCGRG	3 cut(s)	375, 445, 1337
EcoICRI	GAGCTC	1 cut(s)	1178
EcoNI	CCTNNNNNAGG	1 cut(s)	1296
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	1076
EcoRII	CCWGG	8 cut(s)	253, 280, 903, 1483, 1627, 1680, 1740, 1792
EcoT14I	CCWWGG	2 cut(s)	232, 1087
EcoT38I	GRGCYC	3 cut(s)	1180, 1338, 1851
ErhI	CCWWGG	2 cut(s)	232, 1087
FaqI	GGGAC	3 cut(s)	1174, 1684, 2220
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	2 cut(s)	1319, 1737
FokI	GGATG	7 cut(s)	182, 361, 905, 1112, 1889, 2069, 2207
FriOI	GRGCYC	3 cut(s)	1180, 1338, 1851
GlaI	GCGC	2 cut(s)	134, 1887
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	7 cut(s)	252, 714, 804, 908, 1214, 1772, 2050
HapII	CCGG	5 cut(s)	402, 473, 1338, 1818, 1965
HgaI	GACGC	1 cut(s)	1145
HhaI	GCGC	2 cut(s)	135, 1888
Hin6I	GCGC	2 cut(s)	133, 1886
HinP1I	GCGC	2 cut(s)	133, 1886
HincII	GTYRAC	4 cut(s)	366, 408, 973, 1320
HindII	GTYRAC	4 cut(s)	366, 408, 973, 1320
HindIII	AAGCTT	2 cut(s)	93, 1499
HpaII	CCGG	5 cut(s)	402, 473, 1338, 1818, 1965
HphI	GGTGA	7 cut(s)	551, 569, 664, 760, 1070, 2047, 2167
Hpy166II	GTNNAC	7 cut(s)	366, 408, 511, 957, 973, 1320, 1738
Hpy188I	TCNGA	6 cut(s)	223, 800, 835, 1065, 1082, 1099
Hpy188III	TCNNGA	6 cut(s)	146, 815, 1036, 1460, 1493, 1634
Hpy8I	GTNNAC	7 cut(s)	366, 408, 511, 957, 973, 1320, 1738
Hpy99I	CGWCG	1 cut(s)	2273
HpyAV	CCTTC	3 cut(s)	1448, 1899, 2222
HpyCH4III	ACNGT	7 cut(s)	277, 839, 935, 1058, 1246, 1537, 1828
HpyCH4IV	ACGT	5 cut(s)	246, 534, 886, 1862, 2067
HpyF10VI	GCNNNNNNNGC	9 cut(s)	199, 720, 905, 914, 1136, 1391, 1403, 1507, 2001
HpyF3I	CTNAG	6 cut(s)	487, 648, 1143, 1850, 1869, 2322
HpySE526I	ACGT	5 cut(s)	246, 534, 886, 1862, 2067
HspAI	GCGC	2 cut(s)	133, 1886
KpnI	GGTACC	1 cut(s)	1723
Ksp22I	TGATCA	1 cut(s)	1003
Kzo9I	GATC	4 cut(s)	1003, 1060, 1435, 2020
LguI	GCTCTTC	1 cut(s)	1185
LmnI	GCTCC	2 cut(s)	1507, 2066
LweI	GCATC	9 cut(s)	34, 160, 634, 853, 883, 1103, 1399, 1510, 1636
MabI	ACCWGGT	1 cut(s)	1740
MaeII	ACGT	5 cut(s)	246, 534, 886, 1862, 2067
MaeIII	GTNAC	9 cut(s)	83, 440, 557, 652, 1109, 1280, 1684, 1841, 2245
MalI	GATC	4 cut(s)	1005, 1062, 1437, 2022
MboI	GATC	4 cut(s)	1003, 1060, 1435, 2020
MfeI	CAATTG	2 cut(s)	1566, 1949
MhlI	GDGCHC	5 cut(s)	1180, 1338, 1851, 2076, 2119
MlsI	TGGCCA	1 cut(s)	1214
MluNI	TGGCCA	1 cut(s)	1214
MlyI	GAGTC	3 cut(s)	427, 1471, 1714
MmeI	TCCRAC	1 cut(s)	181
Mox20I	TGGCCA	1 cut(s)	1214
MscI	TGGCCA	1 cut(s)	1214
MseI	TTAA	2 cut(s)	267, 327
MslI	CAYNNNNRTG	2 cut(s)	642, 1763
Msp20I	TGGCCA	1 cut(s)	1214
MspA1I	CMGCKG	3 cut(s)	1385, 1406, 1559
MspI	CCGG	5 cut(s)	402, 473, 1338, 1818, 1965
MunI	CAATTG	2 cut(s)	1566, 1949
Mva1269I	GAATGC	1 cut(s)	970
MvaI	CCWGG	8 cut(s)	255, 282, 905, 1485, 1629, 1682, 1742, 1794
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	9 cut(s)	199, 720, 905, 914, 1136, 1391, 1403, 1507, 2001
NciI	CCSGG	4 cut(s)	403, 474, 1338, 1339
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	1003, 1060, 1435, 2020
NlaIV	GGNNCC	8 cut(s)	279, 286, 483, 1721, 1746, 1956, 2062, 2118
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	7 cut(s)	83, 440, 557, 652, 1109, 1841, 2245
NspI	RCATGY	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	242
PaeR7I	CTCGAG	1 cut(s)	375
PagI	TCATGA	1 cut(s)	1035
PciSI	GCTCTTC	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	970
PfeI	GAWTC	7 cut(s)	307, 332, 757, 842, 992, 1609, 2263
PflFI	GACNNNGTC	1 cut(s)	125
PflMI	CCANNNNNTGG	1 cut(s)	2057
PfoI	TCCNGGA	1 cut(s)	1792
PleI	GAGTC	3 cut(s)	426, 1471, 1713
PmaCI	CACGTG	2 cut(s)	887, 2068
PmlI	CACGTG	2 cut(s)	887, 2068
PpsI	GAGTC	3 cut(s)	426, 1471, 1713
Ppu21I	YACGTR	2 cut(s)	887, 2068
PpuMI	RGGWCCY	1 cut(s)	481
Psp124BI	GAGCTC	1 cut(s)	1180
Psp1406I	AACGTT	2 cut(s)	246, 1862
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	8 cut(s)	253, 280, 903, 1483, 1627, 1680, 1740, 1792
PspCI	CACGTG	2 cut(s)	887, 2068
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	8 cut(s)	253, 280, 903, 1483, 1627, 1680, 1740, 1792
PspN4I	GGNNCC	8 cut(s)	279, 286, 483, 1721, 1746, 1956, 2062, 2118
PspPPI	RGGWCCY	1 cut(s)	481
PspXI	VCTCGAGB	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	2 cut(s)	1406, 1559
RsaI	GTAC	4 cut(s)	15, 386, 956, 1721
RsaNI	GTAC	4 cut(s)	14, 385, 955, 1720
RseI	CAYNNNNRTG	2 cut(s)	642, 1763
SacI	GAGCTC	1 cut(s)	1180
SalI	GTCGAC	1 cut(s)	1318
SapI	GCTCTTC	1 cut(s)	1185
SaqAI	TTAA	2 cut(s)	267, 327
Sau3AI	GATC	4 cut(s)	1003, 1060, 1435, 2020
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	3 cut(s)	427, 1471, 1714
SduI	GDGCHC	5 cut(s)	1180, 1338, 1851, 2076, 2119
SexAI	ACCWGGT	1 cut(s)	1740
SfaNI	GCATC	9 cut(s)	34, 160, 634, 853, 883, 1103, 1399, 1510, 1636
Sfr274I	CTCGAG	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	242
SinI	GGWCC	6 cut(s)	154, 219, 436, 481, 1223, 1562
SlaI	CTCGAG	1 cut(s)	375
SmaI	CCCGGG	1 cut(s)	1339
SmiMI	CAYNNNNRTG	2 cut(s)	642, 1763
SmlI	CTYRAG	4 cut(s)	375, 566, 574, 1656
SmoI	CTYRAG	4 cut(s)	375, 566, 574, 1656
SpeI	ACTAGT	4 cut(s)	163, 290, 1286, 1778
SsiI	CCGC	3 cut(s)	686, 1323, 1385
SstI	GAGCTC	1 cut(s)	1180
StyI	CCWWGG	2 cut(s)	232, 1087
TaaI	ACNGT	7 cut(s)	277, 839, 935, 1058, 1246, 1537, 1828
TaiI	ACGT	5 cut(s)	249, 537, 889, 1865, 2070
TaqI	TCGA	4 cut(s)	242, 376, 457, 1319
TatI	WGTACW	3 cut(s)	13, 384, 954
TauI	GCSGC	1 cut(s)	688
TfiI	GAWTC	7 cut(s)	307, 332, 757, 842, 992, 1609, 2263
Tru1I	TTAA	2 cut(s)	267, 327
Tru9I	TTAA	2 cut(s)	267, 327
TseFI	GTSAC	7 cut(s)	83, 440, 557, 652, 1109, 1841, 2245
Tsp45I	GTSAC	7 cut(s)	83, 440, 557, 652, 1109, 1841, 2245
TspDTI	ATGAA	6 cut(s)	17, 345, 726, 944, 1775, 1864
TspGWI	ACGGA	1 cut(s)	428
TspMI	CCCGGG	1 cut(s)	1337
Tth111I	GACNNNGTC	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	2057
VpaK11BI	GGWCC	6 cut(s)	154, 219, 436, 481, 1223, 1562
XagI	CCTNNNNNAGG	1 cut(s)	1296
XapI	RAATTY	3 cut(s)	1076, 1207, 1588
XbaI	TCTAGA	2 cut(s)	814, 1459
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XhoI	CTCGAG	1 cut(s)	375
XmaI	CCCGGG	1 cut(s)	1337
XmiI	GTMKAC	2 cut(s)	1319, 1737
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.