Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Reverse (-)

73444659 .. 73446587

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0545700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGATGACATTGATTATCAAATGGAGAACCTCCTTACAATACTGAGTACTTACATATCTTTTGCTCTAATATTAACAGAGAGGGTTCGTAAGCGCACAAGTGGATGGAGGGAAAAATCGTTGAGTGCTGCTGGCAAAGAAGTCATGATCAAGGCTGTGGCTCAGTCCATTCCTACGTATGTTATGAGTTGTTTTGAGCTTCCGAAACATTTGTGTTTGGAGATGCATAGATTAATGGCTAATTTTTGGTGGGGTGATAAATCGAATGCGAAGAAGATCCATTGGTGTGCTTGGGAGAAACTTTGTGTCCCAAAGAATGAAGGTGGCCTAGGGTTTCGGAATATGGAGCTCTTTAACCAAGCGCTTCTGGCAAAGCAAGGTTGGAGAATCTTACAAAATCCTACGTCCCTTGTTGCCTCTTTGTACAAAGCAAAATATTTTCCAGAGTCTGGCTTTTTAGATGCTGAATTGGGGATCGGTGTTTCCTATGCATGGAGAAGTATTATTCATGGTAGAACTCTGTTGAAGAAAGGGCTTCGCTACCAAGTGGGTAATGGCAGTAATATTAGGGCCTGGTCCGATCCATGGGTTCCATTGCCATACAGTTTCAAACCTTTTACTAGACCTCCTGAGGGGCTGGAATCTCTACGGGTGGAGGAGCTCATTGATAGTGACATGCATGAGTGGAATTTTCCATTACTTCAAGAGTTGTTTACAACGTTTGAGACTGAGTTGATTGGATGCATCCCGCTTAGTTTGCGTGACTCGGAGGATAGGCTAAGTTGGCACTATGACAAGAAAGGGTGCTACTCTGTTCGCAATGGGTATCACGTAGCTAGAAGTGCTGTTGGGCGTGATTCTAAAGCCACTAGTTCCTCAGGTTCCGTGAGTACACACTGGAAAGGGATTTGGCATGCTCGCATTCCTCCTAAGGTACGTTCGTTCATGTGGCGAGTTTTGACTGGGATTCTTCCTACAAAAGCTGCACTACTTCACAGAAAGGTTAGTCTCCCTAATATGAAGTGTGTATTTTGCCATAGTGCAATTGAAGATGATATACATCTATTTAGGGAGTGTGACGTCATTGGAGGTTTCTGGTTGATTAGTGGCTTGCATTTGAATGTCAAAGCTATTCCTGGTCATAATTTGGTAGAATGGGTGATTAATATTATGGGTGGATTGCATGGTAGTCAACGTGAGCTTTTTTTCATGCATTTGTGGGTCATTTGGACCAAGCGCAACAACATCTTGTGGAAAGGTACGTACTTCAATGCATGCAATGCAATTAGATGGTCTAATACCTTTTTGTCTGATTACCAGAAGCAACACCCAAGTGGTTTAGCCAAGAGTGCACGACCTAAGTCCAAATGGCAACTCCCCCCCAGTGGGCGTCTAAAGATCAATGTTGATGGCAGTTTCCGGTCTGAGTTGGGGGATGGAGGTATTGGTGTTGTGGTCCGCGACGAATTTGGTACATGCATTGCATCTATGGCTCGCTACTTCCCTCATGTCCTTTCCGCTACTCATATGGAAGCGGAGGCTTGTAGGGCAGGTATCCTATTGGCTATTCGTGAAGGTTGGGATGCTTTCGACCTAGAAAGTGATTGCTCACTTGTGGTGTCGGCGCTGCAACAAAATATGGAAGATCGATCTAACATAGGGCGTATTATCGATGATTGTAAGTCATATTTGACATCTTTTCACTCTTTTCAGATTAGACATGTTTTCCGTGAAGCAAATGGTGTAGCACATCGATTGGCTCACCTTGCTAGTTTAAATTATCTTGATGATATTTGGGTAGATGAGTCTCCTGTGATTATCCGGGATGTACTCTACGAGGATTTATGTACTGAGGCTAGAGGTCAAGGTTTTATGTCCCCCTCTATGCACTCTTCTAATCTTAATATAATAAGTCAGGCGTGGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

642

Amino Acids

73.09

Weight (kDa)

8.67

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	294 - 366	8.1e-15	zinc-binding in reverse transcriptase
RVT_3	PF13456	468 - 589	6.7e-24	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1083
Acc36I	ACCTGC	1 cut(s)	1541
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccII	CGCG	1 cut(s)	1461
AciI	CCGC	4 cut(s)	749, 1459, 1518, 1535
AclI	AACGTT	1 cut(s)	719
AclWI	GGATC	3 cut(s)	271, 482, 575
AcsI	RAATTY	2 cut(s)	688, 1466
AcyI	GRCGYC	2 cut(s)	1080, 1390
AfaI	GTAC	9 cut(s)	49, 425, 892, 936, 1261, 1265, 1474, 1830, 1849
AfeI	AGCGCT	1 cut(s)	363
AfiI	CCNNNNNNNGG	6 cut(s)	449, 492, 585, 632, 1385, 1386
AflIII	ACRYGT	1 cut(s)	1720
AgsI	TTSAA	6 cut(s)	526, 610, 704, 1049, 1120, 1270
AhlI	ACTAGT	1 cut(s)	869
AjnI	CCWGG	2 cut(s)	572, 1135
AleI	CACNNNNGTG	1 cut(s)	1332
AluBI	AGCT	7 cut(s)	199, 349, 661, 836, 983, 1130, 1201
AluI	AGCT	7 cut(s)	199, 349, 661, 836, 983, 1130, 1201
Alw21I	GWGCWC	3 cut(s)	351, 663, 1354
Alw26I	GTCTC	3 cut(s)	719, 1013, 1812
Alw44I	GTGCAC	1 cut(s)	1350
AlwI	GGATC	3 cut(s)	271, 482, 575
AlwNI	CAGNNNCTG	1 cut(s)	449
Aor51HI	AGCGCT	1 cut(s)	363
AoxI	GGCC	2 cut(s)	325, 570
ApaLI	GTGCAC	1 cut(s)	1350
ApeKI	GCWGC	3 cut(s)	128, 983, 1627
ApoI	RAATTY	2 cut(s)	688, 1466
AseI	ATTAAT	2 cut(s)	233, 1164
AspA2I	CCTAGG	1 cut(s)	328
AspLEI	GCGC	4 cut(s)	96, 364, 1239, 1627
AspS9I	GGNCC	4 cut(s)	570, 576, 1230, 1456
AsuC2I	CCSGG	1 cut(s)	1823
AsuHPI	GGTGA	3 cut(s)	266, 1171, 1754
AvaII	GGWCC	3 cut(s)	576, 1230, 1456
AvrII	CCTAGG	1 cut(s)	328
AxyI	CCTNAGG	3 cut(s)	630, 877, 930
BaeGI	GKGCMC	1 cut(s)	1354
BaeI	ACNNNNGTAYC	2 cut(s)	926, 959
BanII	GRGCYC	2 cut(s)	351, 663
BarI	GAAGNNNNNNTAC	2 cut(s)	1041, 1073
Bbv12I	GWGCWC	3 cut(s)	351, 663, 1354
BbvI	GCAGC	3 cut(s)	115, 970, 1614
BccI	CCATC	4 cut(s)	99, 1284, 1403, 1430
BciT130I	CCWGG	2 cut(s)	574, 1137
BciVI	GTATCC	1 cut(s)	1565
BclI	TGATCA	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	1823
BcoDI	GTCTC	3 cut(s)	719, 1013, 1812
BcuI	ACTAGT	1 cut(s)	869
BfaI	CTAG	7 cut(s)	329, 621, 837, 870, 1595, 1770, 1857
BfoI	RGCGCY	2 cut(s)	365, 1628
BfuAI	ACCTGC	1 cut(s)	1541
BfuI	GTATCC	1 cut(s)	1565
BisI	GCNGC	3 cut(s)	129, 984, 1628
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	3 cut(s)	130, 985, 1629
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	3 cut(s)	574, 1137, 1823
Bme18I	GGWCC	3 cut(s)	576, 1230, 1456
BmgT120I	GGNCC	4 cut(s)	570, 576, 1230, 1456
BmiI	GGNNCC	2 cut(s)	591, 883
BmrFI	CCNGG	3 cut(s)	574, 1137, 1823
BmrI	ACTGGG	2 cut(s)	972, 1377
BmsI	GCATC	6 cut(s)	213, 451, 731, 753, 1493, 1573
BmuI	ACTGGG	2 cut(s)	972, 1377
BoxI	GACNNNNGTC	1 cut(s)	1360
BpuMI	CCSGG	1 cut(s)	1823
Bsa29I	ATCGAT	3 cut(s)	1648, 1671, 1753
BsaAI	YACGTR	3 cut(s)	177, 832, 1263
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaHI	GRCGYC	2 cut(s)	1080, 1390
BsaJI	CCNNGG	2 cut(s)	328, 584
BsaWI	WCCGGW	1 cut(s)	1419
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	6 cut(s)	449, 492, 585, 632, 1385, 1386
Bse1I	ACTGG	3 cut(s)	902, 967, 1383
Bse21I	CCTNAGG	3 cut(s)	630, 877, 930
Bse3DI	GCAATG	4 cut(s)	593, 826, 1285, 1479
Bse8I	GATNNNNATC	1 cut(s)	1059
BseBI	CCWGG	2 cut(s)	574, 1137
BseCI	ATCGAT	3 cut(s)	1648, 1671, 1753
BseDI	CCNNGG	2 cut(s)	328, 584
BseGI	GGATG	7 cut(s)	10, 110, 744, 746, 1441, 1588, 1831
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	6 cut(s)	449, 492, 585, 632, 1385, 1386
BseMI	GCAATG	4 cut(s)	593, 826, 1285, 1479
BseMII	CTCAG	7 cut(s)	35, 176, 621, 720, 891, 1416, 1842
BseNI	ACTGG	3 cut(s)	902, 967, 1383
BseRI	GAGGAG	1 cut(s)	671
BseSI	GKGCMC	1 cut(s)	1354
BseXI	GCAGC	3 cut(s)	115, 970, 1614
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	1 cut(s)	1461
BshFI	GGCC	2 cut(s)	327, 572
BshVI	ATCGAT	3 cut(s)	1648, 1671, 1753
BsiHKAI	GWGCWC	3 cut(s)	351, 663, 1354
BsiSI	CCGG	2 cut(s)	1420, 1822
BslFI	GGGAC	3 cut(s)	293, 391, 1861
BslI	CCNNNNNNNGG	6 cut(s)	449, 492, 585, 632, 1385, 1386
BsmAI	GTCTC	3 cut(s)	719, 1013, 1812
BsmFI	GGGAC	3 cut(s)	293, 391, 1861
BsmI	GAATGC	2 cut(s)	271, 921
BsnI	GGCC	2 cut(s)	327, 572
Bsp1286I	GDGCHC	3 cut(s)	351, 663, 1354
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
Bsp19I	CCATGG	1 cut(s)	584
BspACI	CCGC	4 cut(s)	749, 1459, 1518, 1535
BspANI	GGCC	2 cut(s)	327, 572
BspCNI	CTCAG	7 cut(s)	36, 175, 622, 721, 890, 1417, 1843
BspDI	ATCGAT	3 cut(s)	1648, 1671, 1753
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	591, 883
BspMI	ACCTGC	1 cut(s)	1541
BspPI	GGATC	3 cut(s)	271, 482, 575
BsrDI	GCAATG	4 cut(s)	593, 826, 1285, 1479
BsrGI	TGTACA	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	902, 967, 1383
BssECI	CCNNGG	2 cut(s)	328, 584
BssMI	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
BssNI	GRCGYC	2 cut(s)	1080, 1390
BssT1I	CCWWGG	2 cut(s)	328, 584
Bst2UI	CCWGG	2 cut(s)	574, 1137
Bst4CI	ACNGT	1 cut(s)	605
Bst6I	CTCTTC	1 cut(s)	1897
BstACI	GRCGYC	2 cut(s)	1080, 1390
BstAPI	GCANNNNNTGC	1 cut(s)	1280
BstAUI	TGTACA	1 cut(s)	423
BstBAI	YACGTR	3 cut(s)	177, 832, 1263
BstC8I	GCNNGC	6 cut(s)	133, 915, 919, 1112, 1276, 1495
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	7 cut(s)	10, 110, 744, 746, 1441, 1588, 1831
BstFNI	CGCG	1 cut(s)	1461
BstH2I	RGCGCY	2 cut(s)	365, 1628
BstHHI	GCGC	4 cut(s)	96, 364, 1239, 1627
BstKTI	GATC	7 cut(s)	150, 279, 477, 583, 1401, 1648, 1652
BstMAI	GTCTC	3 cut(s)	719, 1013, 1812
BstMBI	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
BstMWI	GCNNNNNNNGC	9 cut(s)	368, 757, 784, 842, 1280, 1349, 1490, 1547, 1766
BstNI	CCWGG	2 cut(s)	574, 1137
BstNSI	RCATGY	5 cut(s)	679, 917, 1278, 1479, 1724
BstPAI	GACNNNNGTC	1 cut(s)	1360
BstSCI	CCNGG	3 cut(s)	572, 1135, 1821
BstSLI	GKGCMC	1 cut(s)	1354
BstSNI	TACGTA	2 cut(s)	177, 1263
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	3 cut(s)	115, 970, 1614
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
Bsu15I	ATCGAT	3 cut(s)	1648, 1671, 1753
Bsu36I	CCTNAGG	3 cut(s)	630, 877, 930
BsuI	GTATCC	1 cut(s)	1565
BsuRI	GGCC	2 cut(s)	327, 572
BsuTUI	ATCGAT	3 cut(s)	1648, 1671, 1753
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	7 cut(s)	10, 110, 744, 746, 1441, 1588, 1831
BtsIMutI	CAGTG	2 cut(s)	895, 1390
BveI	ACCTGC	1 cut(s)	1541
Cac8I	GCNNGC	6 cut(s)	133, 915, 919, 1112, 1276, 1495
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	4 cut(s)	96, 364, 1239, 1627
Cfr13I	GGNCC	4 cut(s)	570, 576, 1230, 1456
ClaI	ATCGAT	3 cut(s)	1648, 1671, 1753
CseI	GACGC	1 cut(s)	1379
Csp6I	GTAC	9 cut(s)	48, 424, 891, 935, 1260, 1264, 1473, 1829, 1848
CviQI	GTAC	9 cut(s)	48, 424, 891, 935, 1260, 1264, 1473, 1829, 1848
DpnI	GATC	7 cut(s)	149, 278, 476, 582, 1400, 1647, 1651
DpnII	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
DraI	TTTAAA	1 cut(s)	1776
Eam1104I	CTCTTC	1 cut(s)	1897
EarI	CTCTTC	1 cut(s)	1897
Ecl136II	GAGCTC	2 cut(s)	349, 661
Eco105I	TACGTA	2 cut(s)	177, 1263
Eco130I	CCWWGG	2 cut(s)	328, 584
Eco24I	GRGCYC	2 cut(s)	351, 663
Eco47I	GGWCC	3 cut(s)	576, 1230, 1456
Eco47III	AGCGCT	1 cut(s)	363
Eco53kI	GAGCTC	2 cut(s)	349, 661
Eco81I	CCTNAGG	3 cut(s)	630, 877, 930
EcoICRI	GAGCTC	2 cut(s)	349, 661
EcoO109I	RGGNCCY	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	572, 1135
EcoT14I	CCWWGG	2 cut(s)	328, 584
EcoT22I	ATGCAT	7 cut(s)	228, 493, 681, 746, 1215, 1276, 1481
EcoT38I	GRGCYC	2 cut(s)	351, 663
ErhI	CCWWGG	2 cut(s)	328, 584
FaqI	GGGAC	3 cut(s)	293, 391, 1861
FauI	CCCGC	1 cut(s)	756
FauNDI	CATATG	1 cut(s)	1527
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	129, 984, 1628
FokI	GGATG	7 cut(s)	17, 117, 731, 753, 1448, 1595, 1838
FriOI	GRGCYC	2 cut(s)	351, 663
Fsp4HI	GCNGC	3 cut(s)	129, 984, 1628
FspBI	CTAG	7 cut(s)	329, 621, 837, 870, 1595, 1770, 1857
GlaI	GCGC	4 cut(s)	95, 363, 1238, 1626
GluI	GCNGC	3 cut(s)	129, 984, 1628
HaeII	RGCGCY	2 cut(s)	365, 1628
HaeIII	GGCC	2 cut(s)	327, 572
HapII	CCGG	2 cut(s)	1420, 1822
HgaI	GACGC	1 cut(s)	1379
HhaI	GCGC	4 cut(s)	96, 364, 1239, 1627
Hin1I	GRCGYC	2 cut(s)	1080, 1390
Hin6I	GCGC	4 cut(s)	94, 362, 1237, 1625
HinP1I	GCGC	4 cut(s)	94, 362, 1237, 1625
HincII	GTYRAC	1 cut(s)	1193
HindII	GTYRAC	1 cut(s)	1193
HinfI	GANTC	7 cut(s)	387, 446, 641, 764, 857, 967, 1805
HpaII	CCGG	2 cut(s)	1420, 1822
HphI	GGTGA	3 cut(s)	266, 1171, 1754
Hpy166II	GTNNAC	4 cut(s)	714, 893, 1193, 1352
Hpy188I	TCNGA	7 cut(s)	204, 339, 580, 769, 1312, 1426, 1713
Hpy188III	TCNNGA	6 cut(s)	145, 443, 629, 704, 1571, 1784
Hpy8I	GTNNAC	4 cut(s)	714, 893, 1193, 1352
Hpy99I	CGWCG	1 cut(s)	1466
HpyAV	CCTTC	2 cut(s)	314, 1568
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	8 cut(s)	176, 404, 719, 831, 937, 1080, 1195, 1262
HpyF10VI	GCNNNNNNNGC	9 cut(s)	368, 757, 784, 842, 1280, 1349, 1490, 1547, 1766
HpySE526I	ACGT	8 cut(s)	176, 404, 719, 831, 937, 1080, 1195, 1262
Hsp92I	GRCGYC	2 cut(s)	1080, 1390
HspAI	GCGC	4 cut(s)	94, 362, 1237, 1625
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
LmnI	GCTCC	2 cut(s)	346, 658
Lsp1109I	GCAGC	3 cut(s)	115, 970, 1614
LweI	GCATC	6 cut(s)	213, 451, 731, 753, 1493, 1573
MaeI	CTAG	7 cut(s)	329, 621, 837, 870, 1595, 1770, 1857
MaeII	ACGT	8 cut(s)	176, 404, 719, 831, 937, 1080, 1195, 1262
MaeIII	GTNAC	3 cut(s)	671, 761, 1076
MalI	GATC	7 cut(s)	149, 278, 476, 582, 1400, 1647, 1651
MboI	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
MboII	GAAGA	7 cut(s)	283, 286, 538, 962, 1061, 1655, 1884
MfeI	CAATTG	1 cut(s)	1044
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	351, 663, 1354
MluCI	AATT	8 cut(s)	241, 467, 688, 1044, 1144, 1284, 1466, 1777
MlyI	GAGTC	3 cut(s)	455, 758, 1814
MmeI	TCCRAC	1 cut(s)	362
Mph1103I	ATGCAT	7 cut(s)	228, 493, 681, 746, 1215, 1276, 1481
MseI	TTAA	6 cut(s)	74, 233, 354, 1164, 1775, 1902
MslI	CAYNNNNRTG	3 cut(s)	285, 1119, 1332
MspI	CCGG	2 cut(s)	1420, 1822
MspR9I	CCNGG	3 cut(s)	574, 1137, 1823
MunI	CAATTG	1 cut(s)	1044
Mva1269I	GAATGC	2 cut(s)	271, 921
MvaI	CCWGG	2 cut(s)	574, 1137
MvnI	CGCG	1 cut(s)	1461
MwoI	GCNNNNNNNGC	9 cut(s)	368, 757, 784, 842, 1280, 1349, 1490, 1547, 1766
NciI	CCSGG	1 cut(s)	1823
NcoI	CCATGG	1 cut(s)	584
NdeI	CATATG	1 cut(s)	1527
NdeII	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
NlaIV	GGNNCC	2 cut(s)	591, 883
NmuCI	GTSAC	3 cut(s)	671, 761, 1076
NsiI	ATGCAT	7 cut(s)	228, 493, 681, 746, 1215, 1276, 1481
NspI	RCATGY	5 cut(s)	679, 917, 1278, 1479, 1724
OliI	CACNNNNGTG	1 cut(s)	1332
PaeI	GCATGC	2 cut(s)	917, 1278
PagI	TCATGA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	1720
PctI	GAATGC	2 cut(s)	271, 921
PfeI	GAWTC	4 cut(s)	387, 641, 857, 967
PflMI	CCANNNNNTGG	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	1821
PkrI	GCNGC	3 cut(s)	130, 985, 1629
PleI	GAGTC	3 cut(s)	454, 758, 1813
PpsI	GAGTC	3 cut(s)	454, 758, 1813
Ppu21I	YACGTR	3 cut(s)	177, 832, 1263
PscI	ACATGT	1 cut(s)	1720
PshAI	GACNNNNGTC	1 cut(s)	1360
PshBI	ATTAAT	2 cut(s)	233, 1164
Psp124BI	GAGCTC	2 cut(s)	351, 663
Psp1406I	AACGTT	1 cut(s)	719
Psp6I	CCWGG	2 cut(s)	572, 1135
PspGI	CCWGG	2 cut(s)	572, 1135
PspN4I	GGNNCC	2 cut(s)	591, 883
PspPI	GGNCC	4 cut(s)	570, 576, 1230, 1456
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	9 cut(s)	49, 425, 892, 936, 1261, 1265, 1474, 1830, 1849
RsaNI	GTAC	9 cut(s)	48, 424, 891, 935, 1260, 1264, 1473, 1829, 1848
RseI	CAYNNNNRTG	3 cut(s)	285, 1119, 1332
SacI	GAGCTC	2 cut(s)	351, 663
SaqAI	TTAA	6 cut(s)	74, 233, 354, 1164, 1775, 1902
SatI	GCNGC	3 cut(s)	129, 984, 1628
Sau3AI	GATC	7 cut(s)	147, 276, 474, 580, 1398, 1645, 1649
Sau96I	GGNCC	4 cut(s)	570, 576, 1230, 1456
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	3 cut(s)	455, 758, 1814
ScrFI	CCNGG	3 cut(s)	574, 1137, 1823
SduI	GDGCHC	3 cut(s)	351, 663, 1354
SfaNI	GCATC	6 cut(s)	213, 451, 731, 753, 1493, 1573
SinI	GGWCC	3 cut(s)	576, 1230, 1456
SmiMI	CAYNNNNRTG	3 cut(s)	285, 1119, 1332
SnaBI	TACGTA	2 cut(s)	177, 1263
SpeI	ACTAGT	1 cut(s)	869
SphI	GCATGC	2 cut(s)	917, 1278
Sse9I	AATT	8 cut(s)	241, 467, 688, 1044, 1144, 1284, 1466, 1777
SsiI	CCGC	4 cut(s)	749, 1459, 1518, 1535
SspI	AATATT	4 cut(s)	72, 437, 565, 1168
SspMI	CTAG	7 cut(s)	329, 621, 837, 870, 1595, 1770, 1857
SstI	GAGCTC	2 cut(s)	351, 663
StyD4I	CCNGG	3 cut(s)	572, 1135, 1821
StyI	CCWWGG	2 cut(s)	328, 584
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	8 cut(s)	179, 407, 722, 834, 940, 1083, 1198, 1265
TaqI	TCGA	5 cut(s)	263, 1590, 1648, 1671, 1753
TasI	AATT	8 cut(s)	241, 467, 688, 1044, 1144, 1284, 1466, 1777
TatI	WGTACW	5 cut(s)	47, 423, 890, 1828, 1847
TfiI	GAWTC	4 cut(s)	387, 641, 857, 967
Tru1I	TTAA	6 cut(s)	74, 233, 354, 1164, 1775, 1902
Tru9I	TTAA	6 cut(s)	74, 233, 354, 1164, 1775, 1902
TscAI	CASTG	2 cut(s)	902, 1390
TseFI	GTSAC	3 cut(s)	671, 761, 1076
TseI	GCWGC	3 cut(s)	128, 983, 1627
Tsp45I	GTSAC	3 cut(s)	671, 761, 1076
TspDTI	ATGAA	5 cut(s)	333, 497, 934, 1034, 1198
TspGWI	ACGGA	2 cut(s)	874, 1718
TspRI	CASTG	2 cut(s)	902, 1390
Van91I	CCANNNNNTGG	1 cut(s)	449
VneI	GTGCAC	1 cut(s)	1350
VpaK11BI	GGWCC	3 cut(s)	576, 1230, 1456
VspI	ATTAAT	2 cut(s)	233, 1164
XapI	RAATTY	2 cut(s)	688, 1466
XceI	RCATGY	5 cut(s)	679, 917, 1278, 1479, 1724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	7 cut(s)	329, 621, 837, 870, 1595, 1770, 1857
ZraI	GACGTC	1 cut(s)	1081
ZrmI	AGTACT	1 cut(s)	49
Zsp2I	ATGCAT	7 cut(s)	228, 493, 681, 746, 1215, 1276, 1481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.