Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017598.1

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Forward (+)

44 .. 533

Gene Structure 490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017598.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 490 bp

atgaggcttggcttctttgacggtgatccgaaactgctcgaattcggaaaccttggggtatcggatgtttgcagtgacgaacataaagcgttggcacttgacgctgctaagcagggcatagttttgctagataacaatggagctcttcctttgtcccctactacgaccaagaatttggccattattggacctaatgcaaatgccactaaggttatgataagcaactatgctggaataccatgtagctacactagtcctctacaagggctacaaaagtatgtgtcgacagcaaaatatgagcccgggtgtagcagtgtaaaatgtgctgatgaaagccacatcggggcagcggttcaggctgctgccacagctgatgcagtggtgttagtagtggggcttgatcagtccattgaagcagaaggtctagacagagagaacttgactctaccaggctttcaggaaaagcttgtggagcaagttgttgatgcaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

163

Amino Acids

17.01

Weight (kDa)

4.51

Isoelectric Point (pI)

29.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	41, 172
AfiI	CCNNNNNNNGG	2 cut(s)	263, 343
AgsI	TTSAA	1 cut(s)	413
AhlI	ACTAGT	1 cut(s)	251
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	143, 246, 371, 466
AluI	AGCT	4 cut(s)	143, 246, 371, 466
Alw21I	GWGCWC	1 cut(s)	145
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	4 cut(s)	104, 347, 359, 362
ApoI	RAATTY	2 cut(s)	41, 172
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	303, 304
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	179
BanII	GRGCYC	2 cut(s)	145, 303
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	4 cut(s)	91, 346, 349, 359
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	303, 304
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	3 cut(s)	128, 252, 425
BisI	GCNGC	4 cut(s)	105, 348, 360, 363
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	4 cut(s)	106, 349, 361, 364
Bme1390I	CCNGG	3 cut(s)	303, 304, 450
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	3 cut(s)	303, 304, 450
BmsI	GCATC	2 cut(s)	364, 475
Bpu1102I	GCTNAGC	1 cut(s)	108
BpuMI	CCSGG	2 cut(s)	303, 304
BsaJI	CCNNGG	2 cut(s)	52, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 343
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	52, 302
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	2 cut(s)	263, 343
BseXI	GCAGC	4 cut(s)	91, 346, 349, 359
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	263, 343
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	145, 303
Bsp143I	GATC	2 cut(s)	25, 400
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	52, 302
BssMI	GATC	2 cut(s)	25, 400
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	108, 207
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	28, 403
BstMBI	GATC	2 cut(s)	25, 400
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 356, 368, 472
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	3 cut(s)	301, 302, 448
BstV1I	GCAGC	4 cut(s)	91, 346, 349, 359
BstXI	CCANNNNNNTGG	1 cut(s)	175
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	3 cut(s)	79, 319, 384
BtsIMutI	CAGTG	3 cut(s)	79, 319, 384
Cfr13I	GGNCC	1 cut(s)	188
Cfr9I	CCCGGG	1 cut(s)	302
CseI	GACGC	1 cut(s)	110
CviAII	CATG	1 cut(s)	240
DdeI	CTNAG	2 cut(s)	108, 207
DpnI	GATC	2 cut(s)	27, 402
DpnII	GATC	2 cut(s)	25, 400
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	52
Eco24I	GRGCYC	2 cut(s)	145, 303
Eco47I	GGWCC	1 cut(s)	188
Eco53kI	GAGCTC	1 cut(s)	143
Eco88I	CYCGRG	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	2 cut(s)	145, 303
ErhI	CCWWGG	1 cut(s)	52
FaeI	CATG	1 cut(s)	243
FaiI	YATR	7 cut(s)	84, 119, 215, 228, 241, 279, 297
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	105, 348, 360, 363
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	2 cut(s)	145, 303
Fsp4HI	GCNGC	4 cut(s)	105, 348, 360, 363
FspBI	CTAG	3 cut(s)	128, 252, 425
GluI	GCNGC	4 cut(s)	105, 348, 360, 363
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	3 cut(s)	30, 47, 64
Hpy188III	TCNNGA	2 cut(s)	425, 458
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	72, 197, 377, 488
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 356, 368, 472
HpyF3I	CTNAG	2 cut(s)	108, 207
Hsp92II	CATG	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	25, 400
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	140, 472
LpnPI	CCDG	7 cut(s)	98, 216, 316, 341, 435, 443, 462
Lsp1109I	GCAGC	4 cut(s)	91, 346, 349, 359
LweI	GCATC	2 cut(s)	364, 475
MaeI	CTAG	3 cut(s)	128, 252, 425
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	27, 402
MboI	GATC	2 cut(s)	25, 400
MboII	GAAGA	1 cut(s)	137
MhlI	GDGCHC	2 cut(s)	145, 303
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	41, 172
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	436
MnlI	CCTC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	350, 371
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	303, 304, 450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	101, 356, 368, 472
NciI	CCSGG	2 cut(s)	303, 304
NdeII	GATC	2 cut(s)	25, 400
NlaIII	CATG	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	106, 349, 361, 364
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	145
SalI	GTCGAC	1 cut(s)	283
SapI	GCTCTTC	1 cut(s)	150
SatI	GCNGC	4 cut(s)	105, 348, 360, 363
Sau3AI	GATC	2 cut(s)	25, 400
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	3 cut(s)	303, 304, 450
SduI	GDGCHC	2 cut(s)	145, 303
SetI	ASST	8 cut(s)	54, 145, 193, 213, 248, 373, 424, 468
SfaNI	GCATC	2 cut(s)	364, 475
SinI	GGWCC	1 cut(s)	188
SmaI	CCCGGG	1 cut(s)	304
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	2 cut(s)	41, 172
SsiI	CCGC	1 cut(s)	350
SspMI	CTAG	3 cut(s)	128, 252, 425
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	3 cut(s)	301, 302, 448
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	39, 284
TasI	AATT	2 cut(s)	41, 172
TscAI	CASTG	3 cut(s)	79, 319, 384
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	4 cut(s)	104, 347, 359, 362
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	345
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	3 cut(s)	79, 319, 384
VpaK11BI	GGWCC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	2 cut(s)	41, 172
XbaI	TCTAGA	1 cut(s)	424
XmaI	CCCGGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	3 cut(s)	128, 252, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.