Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010289

Physical Location & Seq

Genomic Coordinates Reverse (-)

73425026 .. 73428868

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0545500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2343 bp

ATGGGGCATTGTTCACGTCTCCCTCTTTTTCTTCTATCTCTTATTCTCCTCTCTCTGGTTCAGACGCCGGCCGATGCAGCCAAACAGTCTTACATTGTGTACTTGGGAACACATTCCCATGGCCTGAACCCTACGTCTGTCGAACTCGAAGCAGCAACGAATTCTCAGTACAATCTGCTTGGAACTGTTTTGGGAAGCAATGAGAGGGCCCAAGAAGCATTGTTTTACTCCTATACTAGAGCGATCAATGGATTTGCTGCAGTTTTAGAAGTAGAAGAGGCTTCACAGATTGAAAAGGATCCAAATGTTGTGTCTGTTTTTCCAAACAGAAAATTAAAACTGCATACAACTCGTTCATGGGAGTTCATGGGACTAGAAGACCAAAATGGAGTACCTCGTCACGGATCGATTTGGAAGAAAGCAAAGTTTGGTGAAAATACAATCATTGGAAACCTTGACACTGGTGTCTGGCCAGAATCACCGAGCTTTAGCGATGAAGGGTTTGGACCAATCCCATCCAAGTGGCGTGGAACTTGTCAGCTTGACACCAAAGACAAAGTTCGTTGCAACAGGAAGCTGATCGGAGCAAGGTACTTTAACAAAGGCTACTTGGAGTCTGCCAGGCTCAATAATGCCACCATTCCACCAGAAGTTCTGGCGTCGCCGCGTGACCAGGAAGGCCATGGCTCACACACCCTTTCAACAGCTGGTGGCATTTATGTGCCGGGAGCTAATGTTTTTGGTCATGGCAATGGCACTGCTAAAGGTGGATCCCCAAAAGCTCGTGTGGCTGCTTACAAAGTATGTTGGCCAAGCTTTGGCAGTACAGAAGGAGGGTGTACGAATGCAGACATCATGGCCGCCTTTGATGCTGCAATCAGTGACGGTGTTGATGTTCTTTCGCTGTCCATTGGTGGTGATTCTGTAGAGTTTTTTGAGGATGGGATCGCAATAGGGTCATTCCATGCGGCTAAGCATGGAATCGTTGTTGTTTGCTCAGCTGGCAATTCAGGGCCTGCCCAAGGGACAGTGACTAATGTGGCACCCTGGATATTAACAGTTGGAGCTAGCACCATTGATCGCGAGTTCACTAGTTATTTATCCTTTGGAAAGGGGAAGCATCTAAAGGGAAAAAGTCTTTCTTCCAGAAGTTTGCCATCTAGGAAGTTTTATCCTGTGATAAGTGGAGCCAATGCTAATGCAGCTACTGCGCTTCCTGAAGATTCCTTGCTATGTTTGAATGGAACCCTTGATCCAAAGAAGGTTAAGGGGAAAATCTTGGTCTGCGTACGCGGGCAGAATGGGAGAACTGAAAAAGCCCATATAGCTGGTCTTGCCGGCGCTGTTGGAATGGTTTTGGTTAACGATGAGGAAAGTGGAGATGATCTTATGGCTGATCCTTATCTGCTCCCCGCTACACATCTGACTTACACTGATGGAAAACGTGTCTTTGAGTACCTGAATTCTACCAAGAACCCTTTTGGTCACATTACTCCTGTTAAGACGGTAGAAGGAACAAAGCCAGCTCCATTTATGGCTTCATTCTCATCTCGTGGACCGAGTACCATTGAGCCATCAATCCTTAAGCCTGATATCATAGCACCAGGAGTGGATATAATTGCTGCTTATACTGGAGCACCTCTCTCAACTGATTCGGACCTTGATAAGCGTCGCCCACTTTACGTTACAGAATCTGGAACATCTATGTCATGCCCTCATGTATCTGGAATCGTCGGTCTTCTGAAAACACTTCACCCGTCATGGAGCCCCGCTGCGATTAAGTCTGCAATCTTGACCACAGCGAAAAGACGCGACAACAAACGGGAGTCAATTCTTGATTCAACGAAGGTCTCAGCTACACCACTTGACTATGGTGCAGGCCATGTTAATCCAAATCGCGCAGCAAACCCGGGGCTTGTCTATGACTTGACTACCGATGATTACTTGAATTTCTTATGTGCTCGTGGATACAATGCATCACTTCTCAAAATATTTTCCGACAAGCCACACAAATGTTCCAACACCTCTAGCATTATTGCTGATTTAAACTATCCTACAATTGCTGTTCCTGATCTCCAAGACAAACCAATTACCATTTCTAGGAAAGTGAAGAATGTGGGTACTCCAGGCACATATGTAGCATATGTTCGTGCACCAGCTGGAGTTTCTGTTTCGGTTCAGCCTAGCAGGTTGAAATTCAAGTCCATTGGTGAAGAGAAGGAGTTCAAGGTTACGCTTAAGGCAGATGGTAAGGTTCAAAATAAAGACTATGTGTTTGGGGAGTTGAAATGGTCGGATGGCAAGCACACTGTGAGGAGTCCTATTGCTGTGATGCGTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Fn3-like Glyco_hydro_3 Glyco_hydro_3_C

Protein Analysis

780

Amino Acids

83.53

Weight (kDa)

8.88

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	30 - 115	4.5e-16	Peptidase inhibitor I9
Peptidase_S8	PF00082	144 - 605	1.3e-40	Subtilase family
PA	PF02225	409 - 482	7.3e-13	PA domain
fn3_6	PF17766	681 - 777	1.7e-30	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010289)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19620
fragaria_vesca	FvH4_2g04280
malus_domestica	MD05G1099400.v1.1
prunus_persica	Prupe.8G143900_v2.0.a1
pyrus_communis	pycom05g09830
rosa_chinensis	RchiOBHm_Chr6g0253671 RchiOBHm_Chr6g0253691
rosa_laevigata	RLG00000014993
rosa_multiflora	Rmu_sc0000331.1_g000019 Rmu_sc0001351.1_g000008 Rmu_sc0006378.1_g000004 Rmu_sc0017598.1_g000001
rosa_roxburghii	Rroxscaffold_7G00211710
rosa_rugosa	Rorug05G0545400 Rorug05G0545500 Rorug05G0545600 Rorug05G0545700
rosa_samantha	Rh6AG061200 Rh6CG054800 Rh6DG052300
rosa_wichuraiana	Rw6G005440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
Acc36I	ACCTGC	1 cut(s)	2178
AccB1I	GGYRCC	1 cut(s)	1042
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccII	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
AciI	CCGC	6 cut(s)	665, 861, 968, 1293, 1413, 1770
AclWI	GGATC	8 cut(s)	293, 306, 412, 765, 778, 953, 1247, 1391
AcoI	YGGCCR	4 cut(s)	69, 470, 809, 858
AcsI	RAATTY	4 cut(s)	160, 1462, 1948, 2195
AcuI	CTGAAG	1 cut(s)	1239
AcyI	GRCGYC	2 cut(s)	65, 659
AdeI	CACNNNGTG	1 cut(s)	2311
AfiI	CCNNNNNNNGG	5 cut(s)	55, 401, 818, 1022, 2100
AflII	CTTAAG	2 cut(s)	1583, 2237
AflIII	ACRYGT	1 cut(s)	1444
AhlI	ACTAGT	1 cut(s)	1091
AjiI	CACGTC	1 cut(s)	17
AjnI	CCWGG	5 cut(s)	620, 672, 1046, 1603, 2125
AjuI	GAANNNNNNNTTGG	2 cut(s)	2080, 2112
AloI	GAACNNNNNNTCC	2 cut(s)	1237, 1269
Alw21I	GWGCWC	3 cut(s)	1639, 1963, 2155
Alw26I	GTCTC	2 cut(s)	23, 1855
Alw44I	GTGCAC	1 cut(s)	2151
AlwI	GGATC	8 cut(s)	293, 306, 412, 765, 778, 953, 1247, 1391
AlwNI	CAGNNNCTG	3 cut(s)	1016, 1208, 1694
Ama87I	CYCGRG	1 cut(s)	1909
AoxI	GGCC	9 cut(s)	69, 121, 207, 470, 679, 809, 858, 1013, 1879
ApaI	GGGCCC	1 cut(s)	211
ApaLI	GTGCAC	1 cut(s)	2151
ApeKI	GCWGC	9 cut(s)	77, 152, 257, 791, 872, 1202, 1622, 1772, 1901
ApoI	RAATTY	4 cut(s)	160, 1462, 1948, 2195
ArsI	GACNNNNNNTTYG	4 cut(s)	296, 328, 2258, 2290
Asp700I	GAANNNNTTC	2 cut(s)	112, 2222
AspLEI	GCGC	3 cut(s)	1213, 1343, 1901
AspS9I	GGNCC	6 cut(s)	207, 208, 506, 1013, 1556, 1657
AsuC2I	CCSGG	3 cut(s)	726, 1910, 1911
AsuHPI	GGTGA	5 cut(s)	443, 471, 929, 1745, 2222
AsuNHI	GCTAGC	1 cut(s)	1067
AvaI	CYCGRG	1 cut(s)	1909
AvaII	GGWCC	3 cut(s)	506, 1556, 1657
BaeGI	GKGCMC	2 cut(s)	211, 2155
BalI	TGGCCA	2 cut(s)	472, 811
BamHI	GGATCC	2 cut(s)	298, 770
BanI	GGYRCC	1 cut(s)	1042
BanII	GRGCYC	2 cut(s)	211, 1769
BauI	CACGAG	3 cut(s)	783, 1551, 1962
BbsI	GAAGAC	2 cut(s)	384, 1730
Bbv12I	GWGCWC	3 cut(s)	1639, 1963, 2155
BbvI	GCAGC	9 cut(s)	89, 164, 244, 778, 859, 1214, 1609, 1759, 1913
BccI	CCATC	7 cut(s)	523, 935, 1165, 1430, 1582, 2240, 2291
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	5 cut(s)	622, 674, 1048, 1605, 2127
BciVI	GTATCC	1 cut(s)	1961
BcnI	CCSGG	3 cut(s)	726, 1910, 1911
BcoDI	GTCTC	2 cut(s)	23, 1855
BcuI	ACTAGT	1 cut(s)	1091
BfaI	CTAG	9 cut(s)	237, 374, 1068, 1092, 1161, 2028, 2100, 2184, 2341
BfmI	CTRYAG	2 cut(s)	258, 924
BfoI	RGCGCY	1 cut(s)	1344
BfrI	CTTAAG	2 cut(s)	1583, 2237
BfuAI	ACCTGC	1 cut(s)	2178
BfuI	GTATCC	1 cut(s)	1961
BlpI	GCTNAGC	2 cut(s)	972, 997
Bme1390I	CCNGG	8 cut(s)	622, 674, 726, 1048, 1605, 1910, 1911, 2127
Bme18I	GGWCC	3 cut(s)	506, 1556, 1657
BmeT110I	CYCGRG	1 cut(s)	1909
BmgBI	CACGTC	1 cut(s)	17
BmgT120I	GGNCC	6 cut(s)	207, 208, 506, 1013, 1556, 1657
BmiI	GGNNCC	7 cut(s)	209, 300, 772, 1044, 1189, 1246, 1766
BmrFI	CCNGG	8 cut(s)	622, 674, 726, 1048, 1605, 1910, 1911, 2127
BmsI	GCATC	5 cut(s)	64, 859, 1129, 1985, 2322
BmtI	GCTAGC	1 cut(s)	1071
BpiI	GAAGAC	2 cut(s)	384, 1730
BplI	GAGNNNNNCTC	2 cut(s)	1626, 1658
BpmI	CTGGAG	3 cut(s)	1653, 2109, 2181
Bpu1102I	GCTNAGC	2 cut(s)	972, 997
BpuMI	CCSGG	3 cut(s)	726, 1910, 1911
Bsa29I	ATCGAT	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	1401
BsaHI	GRCGYC	2 cut(s)	65, 659
BsaI	GGTCTC	1 cut(s)	1855
BsaJI	CCNNGG	6 cut(s)	118, 682, 1021, 1046, 1909, 1910
BsaXI	ACNNNNNCTCC	4 cut(s)	720, 750, 2154, 2184
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 401, 818, 1022, 2100
Bse118I	RCCGGY	2 cut(s)	67, 1337
Bse1I	ACTGG	2 cut(s)	466, 1636
Bse3DI	GCAATG	2 cut(s)	205, 757
Bse8I	GATNNNNATC	1 cut(s)	1401
BseBI	CCWGG	5 cut(s)	622, 674, 1048, 1605, 2127
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	6 cut(s)	118, 682, 1021, 1046, 1909, 1910
BseGI	GGATG	3 cut(s)	515, 946, 2302
BseJI	GATNNNNATC	1 cut(s)	1401
BseLI	CCNNNNNNNGG	5 cut(s)	55, 401, 818, 1022, 2100
BseMI	GCAATG	2 cut(s)	205, 757
BseMII	CTCAG	3 cut(s)	179, 1011, 1866
BseNI	ACTGG	2 cut(s)	466, 1636
BseRI	GAGGAG	2 cut(s)	38, 2329
BseSI	GKGCMC	2 cut(s)	211, 2155
BseX3I	CGGCCG	1 cut(s)	69
BseXI	GCAGC	9 cut(s)	89, 164, 244, 778, 859, 1214, 1609, 1759, 1913
BsgI	GTGCAG	1 cut(s)	1896
Bsh1236I	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	9 cut(s)	71, 123, 209, 472, 681, 811, 860, 1015, 1881
BshNI	GGYRCC	1 cut(s)	1042
BshVI	ATCGAT	1 cut(s)	407
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	3 cut(s)	1639, 1963, 2155
BsiHKCI	CYCGRG	1 cut(s)	1909
BsiSI	CCGG	4 cut(s)	68, 725, 1338, 1910
BsiWI	CGTACG	1 cut(s)	1288
BslFI	GGGAC	2 cut(s)	384, 1039
BslI	CCNNNNNNNGG	5 cut(s)	55, 401, 818, 1022, 2100
BsmAI	GTCTC	2 cut(s)	23, 1855
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	2 cut(s)	384, 1039
BsmI	GAATGC	1 cut(s)	850
BsnI	GGCC	9 cut(s)	71, 123, 209, 472, 681, 811, 860, 1015, 1881
Bso31I	GGTCTC	1 cut(s)	1855
BsoBI	CYCGRG	1 cut(s)	1909
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	5 cut(s)	211, 1639, 1769, 1963, 2155
Bsp1720I	GCTNAGC	2 cut(s)	972, 997
Bsp19I	CCATGG	2 cut(s)	118, 682
Bsp68I	TCGCGA	1 cut(s)	1083
BspACI	CCGC	6 cut(s)	665, 861, 968, 1293, 1413, 1770
BspANI	GGCC	9 cut(s)	71, 123, 209, 472, 681, 811, 860, 1015, 1881
BspCNI	CTCAG	3 cut(s)	178, 1010, 1865
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
BspLI	GGNNCC	7 cut(s)	209, 300, 772, 1044, 1189, 1246, 1766
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	2178
BspOI	GCTAGC	1 cut(s)	1071
BspPI	GGATC	8 cut(s)	293, 306, 412, 765, 778, 953, 1247, 1391
BspT107I	GGYRCC	1 cut(s)	1042
BspTI	CTTAAG	2 cut(s)	1583, 2237
BspTNI	GGTCTC	1 cut(s)	1855
BsrDI	GCAATG	2 cut(s)	205, 757
BsrFI	RCCGGY	2 cut(s)	67, 1337
BsrI	ACTGG	2 cut(s)	466, 1636
BssAI	RCCGGY	2 cut(s)	67, 1337
BssECI	CCNNGG	6 cut(s)	118, 682, 1021, 1046, 1909, 1910
BssNI	GRCGYC	2 cut(s)	65, 659
BssSI	CACGAG	3 cut(s)	783, 1551, 1962
BssT1I	CCWWGG	3 cut(s)	118, 682, 1021
Bst2BI	CACGAG	3 cut(s)	783, 1551, 1962
Bst2UI	CCWGG	5 cut(s)	622, 674, 1048, 1605, 2127
Bst4CI	ACNGT	7 cut(s)	87, 187, 887, 1030, 1060, 1507, 2311
Bst6I	CTCTTC	2 cut(s)	270, 2208
BstACI	GRCGYC	2 cut(s)	65, 659
BstAFI	CTTAAG	2 cut(s)	1583, 2237
BstAPI	GCANNNNNTGC	1 cut(s)	1208
BstC8I	GCNNGC	9 cut(s)	69, 1003, 1017, 1069, 1295, 1339, 1524, 1879, 2303
BstDEI	CTNAG	4 cut(s)	165, 972, 997, 1852
BstDSI	CCRYGG	2 cut(s)	118, 682
BstENI	CCTNNNNNAGG	1 cut(s)	1020
BstF5I	GGATG	3 cut(s)	515, 946, 2302
BstFNI	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
BstH2I	RGCGCY	1 cut(s)	1344
BstHHI	GCGC	3 cut(s)	1213, 1343, 1901
BstMAI	GTCTC	2 cut(s)	23, 1855
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	9 cut(s)	77, 215, 788, 869, 1002, 1202, 1208, 1325, 1334
BstNI	CCWGG	5 cut(s)	622, 674, 1048, 1605, 2127
BstSCI	CCNGG	8 cut(s)	620, 672, 724, 1046, 1603, 1908, 1909, 2125
BstSFI	CTRYAG	2 cut(s)	258, 924
BstSLI	GKGCMC	2 cut(s)	211, 2155
BstUI	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
BstV1I	GCAGC	9 cut(s)	89, 164, 244, 778, 859, 1214, 1609, 1759, 1913
BstV2I	GAAGAC	2 cut(s)	384, 1730
BstX2I	RGATCY	2 cut(s)	298, 770
BstXI	CCANNNNNNTGG	2 cut(s)	522, 1328
BstYI	RGATCY	2 cut(s)	298, 770
BstZI	CGGCCG	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	407
BsuI	GTATCC	1 cut(s)	1961
BsuRI	GGCC	9 cut(s)	71, 123, 209, 472, 681, 811, 860, 1015, 1881
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	118, 682
BtgZI	GCGATG	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	17
BtsCI	GGATG	3 cut(s)	515, 946, 2302
BtsI	GCAGTG	1 cut(s)	756
BtsIMutI	CAGTG	6 cut(s)	459, 756, 886, 1035, 1431, 2307
BtuMI	TCGCGA	1 cut(s)	1083
BveI	ACCTGC	1 cut(s)	2178
Cac8I	GCNNGC	9 cut(s)	69, 1003, 1017, 1069, 1295, 1339, 1524, 1879, 2303
CaiI	CAGNNNCTG	3 cut(s)	1016, 1208, 1694
CfoI	GCGC	3 cut(s)	1213, 1343, 1901
Cfr10I	RCCGGY	2 cut(s)	67, 1337
Cfr13I	GGNCC	6 cut(s)	207, 208, 506, 1013, 1556, 1657
Cfr9I	CCCGGG	1 cut(s)	1909
ClaI	ATCGAT	1 cut(s)	407
CseI	GACGC	5 cut(s)	73, 648, 1658, 1818, 2324
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
DdeI	CTNAG	4 cut(s)	165, 972, 997, 1852
DraI	TTTAAA	1 cut(s)	2046
DraIII	CACNNNGTG	1 cut(s)	2311
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
EaeI	YGGCCR	4 cut(s)	69, 470, 809, 858
EagI	CGGCCG	1 cut(s)	69
Eam1104I	CTCTTC	2 cut(s)	270, 2208
EarI	CTCTTC	2 cut(s)	270, 2208
EclXI	CGGCCG	1 cut(s)	69
Eco130I	CCWWGG	3 cut(s)	118, 682, 1021
Eco24I	GRGCYC	2 cut(s)	211, 1769
Eco31I	GGTCTC	1 cut(s)	1855
Eco32I	GATATC	1 cut(s)	1594
Eco47I	GGWCC	3 cut(s)	506, 1556, 1657
Eco52I	CGGCCG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	1239
Eco88I	CYCGRG	1 cut(s)	1909
EcoNI	CCTNNNNNAGG	1 cut(s)	1020
EcoO109I	RGGNCCY	2 cut(s)	207, 1013
EcoRI	GAATTC	2 cut(s)	160, 1462
EcoRII	CCWGG	5 cut(s)	620, 672, 1046, 1603, 2125
EcoRV	GATATC	1 cut(s)	1594
EcoT14I	CCWWGG	3 cut(s)	118, 682, 1021
EcoT22I	ATGCAT	1 cut(s)	1978
EcoT38I	GRGCYC	2 cut(s)	211, 1769
ErhI	CCWWGG	3 cut(s)	118, 682, 1021
Esp3I	CGTCTC	1 cut(s)	23
FalI	AAGNNNNNCTT	2 cut(s)	1126, 1158
FaqI	GGGAC	2 cut(s)	384, 1039
FauI	CCCGC	3 cut(s)	1286, 1420, 1777
FauNDI	CATATG	2 cut(s)	2134, 2143
FokI	GGATG	3 cut(s)	502, 953, 2309
FriOI	GRGCYC	2 cut(s)	211, 1769
FspBI	CTAG	9 cut(s)	237, 374, 1068, 1092, 1161, 2028, 2100, 2184, 2341
GlaI	GCGC	3 cut(s)	1212, 1342, 1900
GsuI	CTGGAG	3 cut(s)	1653, 2109, 2181
HaeII	RGCGCY	1 cut(s)	1344
HaeIII	GGCC	9 cut(s)	71, 123, 209, 472, 681, 811, 860, 1015, 1881
HapII	CCGG	4 cut(s)	68, 725, 1338, 1910
HgaI	GACGC	5 cut(s)	73, 648, 1658, 1818, 2324
HhaI	GCGC	3 cut(s)	1213, 1343, 1901
Hin1I	GRCGYC	2 cut(s)	65, 659
Hin6I	GCGC	3 cut(s)	1211, 1341, 1899
HinP1I	GCGC	3 cut(s)	1211, 1341, 1899
HincII	GTYRAC	1 cut(s)	1363
HindII	GTYRAC	1 cut(s)	1363
HindIII	AAGCTT	1 cut(s)	814
HpaI	GTTAAC	1 cut(s)	1363
HpaII	CCGG	4 cut(s)	68, 725, 1338, 1910
HphI	GGTGA	5 cut(s)	443, 471, 929, 1745, 2222
Hpy166II	GTNNAC	7 cut(s)	14, 100, 840, 1089, 1363, 1556, 2153
Hpy188I	TCNGA	7 cut(s)	63, 584, 1425, 1657, 1743, 1999, 2296
Hpy188III	TCNNGA	8 cut(s)	1082, 1146, 1217, 1695, 1725, 1792, 1835, 2069
Hpy8I	GTNNAC	7 cut(s)	14, 100, 840, 1089, 1363, 1556, 2153
Hpy99I	CGWCG	3 cut(s)	664, 1674, 1736
HpyAV	CCTTC	7 cut(s)	491, 671, 824, 1255, 1505, 1840, 2212
HpyCH4III	ACNGT	7 cut(s)	87, 187, 887, 1030, 1060, 1507, 2311
HpyCH4IV	ACGT	4 cut(s)	16, 134, 1444, 1683
HpyF10VI	GCNNNNNNNGC	9 cut(s)	77, 215, 788, 869, 1002, 1202, 1208, 1325, 1334
HpyF3I	CTNAG	4 cut(s)	165, 972, 997, 1852
HpySE526I	ACGT	4 cut(s)	16, 134, 1444, 1683
Hsp92I	GRCGYC	2 cut(s)	65, 659
HspAI	GCGC	3 cut(s)	1211, 1341, 1899
KroI	GCCGGC	2 cut(s)	67, 1337
KroNI	GCCGGC	2 cut(s)	69, 1339
KspAI	GTTAAC	1 cut(s)	1363
LmnI	GCTCC	8 cut(s)	584, 728, 1064, 1187, 1413, 1531, 1634, 1764
Lsp1109I	GCAGC	9 cut(s)	89, 164, 244, 778, 859, 1214, 1609, 1759, 1913
LweI	GCATC	5 cut(s)	64, 859, 1129, 1985, 2322
MaeI	CTAG	9 cut(s)	237, 374, 1068, 1092, 1161, 2028, 2100, 2184, 2341
MaeII	ACGT	4 cut(s)	16, 134, 1444, 1683
MaeIII	GTNAC	8 cut(s)	398, 668, 881, 1030, 1484, 1684, 2230, 2336
MboII	GAAGA	9 cut(s)	23, 287, 389, 427, 1134, 1232, 1730, 2122, 2225
MfeI	CAATTG	1 cut(s)	2058
MflI	RGATCY	2 cut(s)	298, 770
MhlI	GDGCHC	5 cut(s)	211, 1639, 1769, 1963, 2155
MlsI	TGGCCA	2 cut(s)	472, 811
MluNI	TGGCCA	2 cut(s)	472, 811
MlyI	GAGTC	3 cut(s)	623, 1835, 2326
MmeI	TCCRAC	5 cut(s)	1042, 1327, 2022, 2043, 2274
Mox20I	TGGCCA	2 cut(s)	472, 811
Mph1103I	ATGCAT	1 cut(s)	1978
MroNI	GCCGGC	2 cut(s)	67, 1337
MroXI	GAANNNNTTC	2 cut(s)	112, 2222
MscI	TGGCCA	2 cut(s)	472, 811
MslI	CAYNNNNRTG	5 cut(s)	117, 520, 719, 750, 2011
Msp20I	TGGCCA	2 cut(s)	472, 811
MspA1I	CMGCKG	4 cut(s)	707, 1001, 1772, 2159
MspCI	CTTAAG	2 cut(s)	1583, 2237
MspI	CCGG	4 cut(s)	68, 725, 1338, 1910
MspR9I	CCNGG	8 cut(s)	622, 674, 726, 1048, 1605, 1910, 1911, 2127
MunI	CAATTG	1 cut(s)	2058
Mva1269I	GAATGC	1 cut(s)	850
MvaI	CCWGG	5 cut(s)	622, 674, 1048, 1605, 2127
MvnI	CGCG	5 cut(s)	667, 1083, 1293, 1812, 1899
MwoI	GCNNNNNNNGC	9 cut(s)	77, 215, 788, 869, 1002, 1202, 1208, 1325, 1334
NaeI	GCCGGC	2 cut(s)	69, 1339
NciI	CCSGG	3 cut(s)	726, 1910, 1911
NcoI	CCATGG	2 cut(s)	118, 682
NdeI	CATATG	2 cut(s)	2134, 2143
NgoMIV	GCCGGC	2 cut(s)	67, 1337
NheI	GCTAGC	1 cut(s)	1067
NlaIV	GGNNCC	7 cut(s)	209, 300, 772, 1044, 1189, 1246, 1766
NmuCI	GTSAC	6 cut(s)	398, 668, 881, 1030, 1484, 2336
NruI	TCGCGA	1 cut(s)	1083
NsiI	ATGCAT	1 cut(s)	1978
PctI	GAATGC	1 cut(s)	850
PdiI	GCCGGC	2 cut(s)	69, 1339
PdmI	GAANNNNTTC	2 cut(s)	112, 2222
PfeI	GAWTC	8 cut(s)	476, 920, 981, 1223, 1652, 1691, 1728, 1838
Pfl23II	CGTACG	1 cut(s)	1288
PflMI	CCANNNNNTGG	1 cut(s)	818
PleI	GAGTC	3 cut(s)	622, 1834, 2325
PpsI	GAGTC	3 cut(s)	622, 1834, 2325
Psp6I	CCWGG	5 cut(s)	620, 672, 1046, 1603, 2125
PspGI	CCWGG	5 cut(s)	620, 672, 1046, 1603, 2125
PspLI	CGTACG	1 cut(s)	1288
PspN4I	GGNNCC	7 cut(s)	209, 300, 772, 1044, 1189, 1246, 1766
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	6 cut(s)	207, 208, 506, 1013, 1556, 1657
PsrI	GAACNNNNNNTAC	2 cut(s)	2130, 2162
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	3 cut(s)	1016, 1208, 1694
PsuI	RGATCY	2 cut(s)	298, 770
PvuII	CAGCTG	3 cut(s)	707, 1001, 2159
RruI	TCGCGA	1 cut(s)	1083
RseI	CAYNNNNRTG	5 cut(s)	117, 520, 719, 750, 2011
Sau96I	GGNCC	6 cut(s)	207, 208, 506, 1013, 1556, 1657
SchI	GAGTC	3 cut(s)	623, 1835, 2326
ScrFI	CCNGG	8 cut(s)	622, 674, 726, 1048, 1605, 1910, 1911, 2127
SduI	GDGCHC	5 cut(s)	211, 1639, 1769, 1963, 2155
SfaNI	GCATC	5 cut(s)	64, 859, 1129, 1985, 2322
SfcI	CTRYAG	2 cut(s)	258, 924
SinI	GGWCC	3 cut(s)	506, 1556, 1657
SmaI	CCCGGG	1 cut(s)	1911
SmiMI	CAYNNNNRTG	5 cut(s)	117, 520, 719, 750, 2011
SmlI	CTYRAG	2 cut(s)	1583, 2237
SmoI	CTYRAG	2 cut(s)	1583, 2237
SpeI	ACTAGT	1 cut(s)	1091
SsiI	CCGC	6 cut(s)	665, 861, 968, 1293, 1413, 1770
SspI	AATATT	1 cut(s)	1992
SspMI	CTAG	9 cut(s)	237, 374, 1068, 1092, 1161, 2028, 2100, 2184, 2341
StyD4I	CCNGG	8 cut(s)	620, 672, 724, 1046, 1603, 1908, 1909, 2125
StyI	CCWWGG	3 cut(s)	118, 682, 1021
TaaI	ACNGT	7 cut(s)	87, 187, 887, 1030, 1060, 1507, 2311
TaiI	ACGT	4 cut(s)	19, 137, 1447, 1686
TaqI	TCGA	3 cut(s)	141, 147, 407
TaqII	GACCGA	2 cut(s)	1573, 1724
TatI	WGTACW	3 cut(s)	99, 168, 824
TauI	GCSGC	3 cut(s)	667, 863, 971
TfiI	GAWTC	8 cut(s)	476, 920, 981, 1223, 1652, 1691, 1728, 1838
TscAI	CASTG	6 cut(s)	466, 763, 886, 1035, 1438, 2314
TseFI	GTSAC	6 cut(s)	398, 668, 881, 1030, 1484, 2336
TseI	GCWGC	9 cut(s)	77, 152, 257, 791, 872, 1202, 1622, 1772, 1901
Tsp45I	GTSAC	6 cut(s)	398, 668, 881, 1030, 1484, 2336
TspDTI	ATGAA	4 cut(s)	345, 355, 510, 1530
TspGWI	ACGGA	1 cut(s)	417
TspMI	CCCGGG	1 cut(s)	1909
TspRI	CASTG	6 cut(s)	466, 763, 886, 1035, 1438, 2314
Van91I	CCANNNNNTGG	1 cut(s)	818
Vha464I	CTTAAG	2 cut(s)	1583, 2237
VneI	GTGCAC	1 cut(s)	2151
VpaK11BI	GGWCC	3 cut(s)	506, 1556, 1657
XagI	CCTNNNNNAGG	1 cut(s)	1020
XapI	RAATTY	4 cut(s)	160, 1462, 1948, 2195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmaI	CCCGGG	1 cut(s)	1909
XmnI	GAANNNNTTC	2 cut(s)	112, 2222
XspI	CTAG	9 cut(s)	237, 374, 1068, 1092, 1161, 2028, 2100, 2184, 2341
Zsp2I	ATGCAT	1 cut(s)	1978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.