Rmu_co8217522.1_g000001

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8217522.1
OG0013102
Physical Location & Seq
Reverse (-)
248 .. 721
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8217522.1_g000001.1.cds

Sequence Viewer

Length: 474 bp
atgaaggctacaaatccatcaaataaatcaagtaaaacttgtggtaatgtaccaaagggtacacttacagttaagaagcaaaagaatgatgctcatattggattggtctcggagagagagaacttgcacgattgggtgaagggaagtgctttatccgcagctgcagacttggaaaaatccttacatgatgaatgcagaaaatggtttttggctacctttgagagttacctggatgaggttaagagcagaaccgattcgatggaatcagatagccaagtagccgagactatgtgtcagattaagaaagttggagaccggttggatgtgattgtcagcaaagaagattctgaattggaagcttatgggaggatcaaggagaagatatatggggtacttctgaagaatgtggagaggactactatggttatggaacaaatgaatgcaatattcaatgtagacaatgggcaacaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

157

Amino Acids

17.63

Weight (kDa)

5.96

Isoelectric Point (pI)

24.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19610
fragaria_vesca FvH4_2g04240
malus_domestica MD05G1099200.v1.1
prunus_persica Prupe.8G143800_v2.0.a1 Prupe.8G143800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253661
rosa_laevigata RLG00000014995
rosa_multiflora Rmu_co8217522.1_g000001 Rmu_sc0001351.1_g000001
rosa_roxburghii Rroxscaffold_7G00211720
rosa_rugosa Rorug05G0545400
rosa_samantha Rh6AG061100 Rh6BG054900 Rh6CG054500 Rh6CG054600 Rh6DG052000 Rh6DG052100
rosa_wichuraiana Rw6G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 377
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 3 cut(s) 51, 61, 393
AfiI CCNNNNNNNGG 1 cut(s) 235
AgeI ACCGGT 1 cut(s) 315
AgsI TTSAA 1 cut(s) 451
AhdI GACNNNNNGTC 1 cut(s) 291
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 2 cut(s) 161, 359
AluI AGCT 2 cut(s) 161, 359
Alw26I GTCTC 3 cut(s) 112, 278, 306
AlwI GGATC 1 cut(s) 377
ApeKI GCWGC 2 cut(s) 158, 161
AsiGI ACCGGT 1 cut(s) 315
Asp700I GAANNNNTTC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 2 cut(s) 148, 170
BccI CCATC 2 cut(s) 25, 253
BciT130I CCWGG 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 112, 278, 306
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 159, 162
BlsI GCNGC 2 cut(s) 160, 163
Bme1390I CCNGG 1 cut(s) 230
BmeRI GACNNNNNGTC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 79
BsaI GGTCTC 2 cut(s) 112, 306
BsaWI WCCGGW 1 cut(s) 315
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 315
BseBI CCWGG 1 cut(s) 230
BseGI GGATG 2 cut(s) 238, 328
BseLI CCNNNNNNNGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 148, 170
BshTI ACCGGT 1 cut(s) 315
BsiSI CCGG 1 cut(s) 316
BslI CCNNNNNNNGG 1 cut(s) 235
BsmAI GTCTC 3 cut(s) 112, 278, 306
BsmI GAATGC 2 cut(s) 197, 445
Bso31I GGTCTC 2 cut(s) 112, 306
Bsp143I GATC 1 cut(s) 369
BspACI CCGC 1 cut(s) 156
BspMAI CTGCAG 1 cut(s) 166
BspPI GGATC 1 cut(s) 377
BspTNI GGTCTC 2 cut(s) 112, 306
BsrFI RCCGGY 1 cut(s) 315
BssAI RCCGGY 1 cut(s) 315
BssMI GATC 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 70
BstENI CCTNNNNNAGG 1 cut(s) 233
BstF5I GGATG 2 cut(s) 238, 328
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 3 cut(s) 112, 278, 306
BstMBI GATC 1 cut(s) 369
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 148, 170
BtsCI GGATG 2 cut(s) 238, 328
Cfr10I RCCGGY 1 cut(s) 315
Csp6I GTAC 3 cut(s) 50, 60, 392
CspAI ACCGGT 1 cut(s) 315
CviAII CATG 1 cut(s) 185
CviJI RGCY 6 cut(s) 8, 161, 212, 273, 281, 359
CviKI_1 RGCY 6 cut(s) 8, 161, 212, 273, 281, 359
CviQI GTAC 3 cut(s) 50, 60, 392
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
DriI GACNNNNNGTC 1 cut(s) 291
Eam1105I GACNNNNNGTC 1 cut(s) 291
Eco31I GGTCTC 2 cut(s) 112, 306
Eco57I CTGAAG 1 cut(s) 419
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 188
FaiI YATR 8 cut(s) 96, 186, 290, 363, 385, 387, 422, 428
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 1 cut(s) 184
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 2 cut(s) 159, 162
FokI GGATG 2 cut(s) 245, 335
Fsp4HI GCNGC 2 cut(s) 159, 162
GluI GCNGC 2 cut(s) 159, 162
HapII CCGG 1 cut(s) 316
Hin1II CATG 1 cut(s) 188
HindIII AAGCTT 1 cut(s) 357
HinfI GANTC 3 cut(s) 254, 263, 344
HpaII CCGG 1 cut(s) 316
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 2 cut(s) 62, 457
Hpy188I TCNGA 5 cut(s) 112, 268, 297, 349, 399
Hpy8I GTNNAC 2 cut(s) 62, 457
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 127, 164, 195, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 188
Kzo9I GATC 1 cut(s) 369
LpnPI CCDG 3 cut(s) 215, 242, 329
Lsp1109I GCAGC 2 cut(s) 148, 170
LweI GCATC 1 cut(s) 79
MaeIII GTNAC 1 cut(s) 224
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 3 cut(s) 353, 391, 412
MluCI AATT 1 cut(s) 350
MmeI TCCRAC 2 cut(s) 289, 300
MnlI CCTC 3 cut(s) 229, 360, 405
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 3 cut(s) 72, 240, 300
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 230
Mva1269I GAATGC 2 cut(s) 197, 445
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 1 cut(s) 369
NlaIII CATG 1 cut(s) 188
NmeAIII GCCGAG 1 cut(s) 307
PctI GAATGC 2 cut(s) 197, 445
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 254, 263, 344
PinAI ACCGGT 1 cut(s) 315
PkrI GCNGC 2 cut(s) 160, 163
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PstI CTGCAG 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 161
RsaI GTAC 3 cut(s) 51, 61, 393
RsaNI GTAC 3 cut(s) 50, 60, 392
SaqAI TTAA 3 cut(s) 72, 240, 300
SatI GCNGC 2 cut(s) 159, 162
Sau3AI GATC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 230
SetI ASST 5 cut(s) 163, 218, 231, 240, 361
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 162
Sse9I AATT 1 cut(s) 350
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 257
TasI AATT 1 cut(s) 350
TfiI GAWTC 3 cut(s) 254, 263, 344
Tru1I TTAA 3 cut(s) 72, 240, 300
Tru9I TTAA 3 cut(s) 72, 240, 300
TseI GCWGC 2 cut(s) 158, 161
TspDTI ATGAA 3 cut(s) 17, 204, 452
XagI CCTNNNNNAGG 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.