Rh6CG054600

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013102
Physical Location & Seq
Reverse (-)
5601663 .. 5603862
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG054600.1

Sequence Viewer

Length: 1194 bp
ATGCCCTCCACCTTTGACGAAATGCCTAGCCTGAGTTCTGGGGTTCTTGAGAAGCTTGTTGAAGAAATGGGAAGTGACCCAAAGGCCCTGAACGGTGATCGAAAACCGGTCTTATTACAAATCAGGAGCATCATGCCTGTTTTAGCAGAAGGTGATCTTTGGCCCAATAAAGGGTTTTACTTGAAGGTTTCAGATGCTTCACACACAATGTATGTGTCATTGCCTCCAGAGCAGGATGACCTGGTTCTTTGCAACATATTGCAACTAGGGCAATTAATATATGTCGAAAAGCTGGAGGTAGCGCGGCCGGTGCCCGTGCTTAGAGGTATAAACCCTGTCCCGGGCCAACTAATTCCCTGTGTTGGACAGCTTGAAGATCTCGTTTCCATTGATAAGTTTGTGGATTTTAAAGGGGCGTCTGATTTACTATTTGTAATGGAAAAGAATAGTAACGTGGGGAAGAAGCCACAGCCAAAATTTCGATCTTTGAGGGCCTCTAAGACCCGCCCAAGAGAGAAGATCTCAAGGATATGTAGGTCTGGAAGCGGTGATATTGTTGACAAGGAAATATGTGAGGTGACAAAGGGGCCGAGAAAAGTGAGCTCAAGATATGTTGAGAGTGATTCTGAAAGCACATCTTCTTCCTCGTTGACACAAACTGCGAGGAGAAGGAGCTGGATTGGACCAGAAGCTGCAGATTTCCCACTTGTAAAGCATGAGATAAAGCCAAGTGCTAGGCGCAGCCGTAGTGCGCATGTTTCTCCAGTTCGTTCTACAAGAAGTGGTTCAGATGACAATTCAAGTTGTAAAATAAAAAGAACAATTAGCTTTGATCAAGCTGGGAAATCAAGTAAAAATTCCAACAATAGGATCTCAATGCCGGCTAAAAATTGTGAGCAGCCCTTAGATCCTTCAGTGATGGTTAATTTGGCGATTGATTGTAAATGGTCAGAAAGTAAGATACAGTGGAACTCCCTCCCTCCAACATTAGTGACTCTTGGGAAGGAGGTGTTAAGGCACAGAGATGTTTCTCTGCTTGCTGCAGTGGAGGCTTTGCAAGAGGCTTCTGTTGCTGAGAGATTGCTGAAATTCCTAAGTACATACTCAGAACTTCAGTCAGCCGAAGGGGAGGAACATCTTCCGTCAATTATTAAATCTTTGATCTTCAAGACTACTTGGTTCATACTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

397

Amino Acids

44.03

Weight (kDa)

8.83

Isoelectric Point (pI)

57.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF936 PF06075 11 - 128 3.2e-43 Plant protein of unknown function (DUF936)
DUF6857 PF21647 313 - 383 4.2e-24 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19610
fragaria_vesca FvH4_2g04240
malus_domestica MD05G1099200.v1.1
prunus_persica Prupe.8G143800_v2.0.a1 Prupe.8G143800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253661
rosa_laevigata RLG00000014995
rosa_multiflora Rmu_co8217522.1_g000001 Rmu_sc0001351.1_g000001
rosa_roxburghii Rroxscaffold_7G00211720
rosa_rugosa Rorug05G0545400
rosa_samantha Rh6AG061100 Rh6BG054900 Rh6CG054500 Rh6CG054600 Rh6DG052000 Rh6DG052100
rosa_wichuraiana Rw6G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 753
AccB1I GGYRCC 1 cut(s) 310
AccII CGCG 1 cut(s) 304
AciI CCGC 3 cut(s) 304, 505, 546
AclWI GGATC 2 cut(s) 878, 902
AcoI YGGCCR 1 cut(s) 305
AcsI RAATTY 3 cut(s) 476, 856, 1088
AcuI CTGAAG 2 cut(s) 897, 1097
AcyI GRCGYC 1 cut(s) 416
AfaI GTAC 1 cut(s) 1099
AfiI CCNNNNNNNGG 6 cut(s) 170, 171, 340, 341, 362, 867
AgeI ACCGGT 1 cut(s) 106
AgsI TTSAA 5 cut(s) 62, 184, 374, 801, 1168
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 8 cut(s) 55, 292, 370, 603, 675, 692, 828, 839
AluI AGCT 8 cut(s) 55, 292, 370, 603, 675, 692, 828, 839
Alw21I GWGCWC 1 cut(s) 605
AlwI GGATC 2 cut(s) 878, 902
AlwNI CAGNNNCTG 1 cut(s) 692
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 6 cut(s) 84, 161, 305, 343, 492, 587
ApeKI GCWGC 4 cut(s) 692, 741, 898, 1040
ApoI RAATTY 3 cut(s) 476, 856, 1088
AseI ATTAAT 1 cut(s) 275
AsiGI ACCGGT 1 cut(s) 106
Asp700I GAANNNNTTC 2 cut(s) 784, 1137
AspLEI GCGC 3 cut(s) 304, 741, 754
AspS9I GGNCC 6 cut(s) 85, 162, 343, 492, 587, 683
AsuC2I CCSGG 2 cut(s) 341, 342
AsuHPI GGTGA 4 cut(s) 107, 164, 560, 589
AvaI CYCGRG 1 cut(s) 340
AvaII GGWCC 1 cut(s) 683
BaeGI GKGCMC 1 cut(s) 315
BanI GGYRCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 4 cut(s) 679, 753, 910, 1027
BccI CCATC 1 cut(s) 913
BceAI ACGGC 1 cut(s) 729
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 2 cut(s) 341, 342
BfaI CTAG 3 cut(s) 27, 266, 735
BfmI CTRYAG 2 cut(s) 693, 1041
BglII AGATCT 2 cut(s) 376, 519
BisI GCNGC 5 cut(s) 305, 693, 742, 899, 1041
BlsI GCNGC 5 cut(s) 306, 694, 743, 900, 1042
Bme1390I CCNGG 3 cut(s) 242, 341, 342
Bme18I GGWCC 1 cut(s) 683
BmeT110I CYCGRG 1 cut(s) 340
BmgT120I GGNCC 6 cut(s) 85, 162, 343, 492, 587, 683
BmiI GGNNCC 2 cut(s) 312, 588
BmrFI CCNGG 3 cut(s) 242, 341, 342
BmsI GCATC 2 cut(s) 138, 184
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpmI CTGGAG 3 cut(s) 210, 314, 747
BpuEI CTTGAG 3 cut(s) 68, 508, 589
BpuMI CCSGG 2 cut(s) 341, 342
BsaHI GRCGYC 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 6 cut(s) 170, 171, 340, 341, 362, 867
Bse118I RCCGGY 3 cut(s) 106, 307, 880
Bse1I ACTGG 1 cut(s) 764
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 6 cut(s) 170, 171, 340, 341, 362, 867
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 3 cut(s) 23, 1065, 1119
BseNI ACTGG 1 cut(s) 764
BseRI GAGGAG 1 cut(s) 679
BseSI GKGCMC 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 4 cut(s) 679, 753, 910, 1027
BseYI CCCAGC 1 cut(s) 839
Bsh1236I CGCG 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 6 cut(s) 86, 163, 307, 345, 494, 589
BshNI GGYRCC 1 cut(s) 310
BshTI ACCGGT 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 340
BsiSI CCGG 4 cut(s) 107, 308, 341, 881
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 6 cut(s) 170, 171, 340, 341, 362, 867
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 6 cut(s) 86, 163, 307, 345, 494, 589
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 315, 605
Bsp143I GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
BspACI CCGC 3 cut(s) 304, 505, 546
BspANI GGCC 6 cut(s) 86, 163, 307, 345, 494, 589
BspCNI CTCAG 3 cut(s) 24, 1066, 1118
BspFNI CGCG 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 312, 588
BspMAI CTGCAG 2 cut(s) 697, 1045
BspPI GGATC 2 cut(s) 878, 902
BspT107I GGYRCC 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 3 cut(s) 106, 307, 880
BsrI ACTGG 1 cut(s) 764
BssAI RCCGGY 3 cut(s) 106, 307, 880
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
BssNI GRCGYC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 2 cut(s) 95, 966
BstACI GRCGYC 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 882, 1038
BstDEI CTNAG 7 cut(s) 32, 320, 498, 904, 1074, 1094, 1105
BstF5I GGATG 1 cut(s) 241
BstFNI CGCG 1 cut(s) 304
BstHHI GCGC 3 cut(s) 304, 741, 754
BstKTI GATC 9 cut(s) 100, 157, 379, 485, 522, 835, 873, 910, 1164
BstMBI GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 5 cut(s) 229, 268, 310, 1049, 1070
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 3 cut(s) 240, 339, 340
BstSFI CTRYAG 2 cut(s) 693, 1041
BstSLI GKGCMC 1 cut(s) 315
BstUI CGCG 1 cut(s) 304
BstV1I GCAGC 4 cut(s) 679, 753, 910, 1027
BstX2I RGATCY 4 cut(s) 376, 519, 870, 907
BstYI RGATCY 4 cut(s) 376, 519, 870, 907
BstZI CGGCCG 1 cut(s) 305
BsuRI GGCC 6 cut(s) 86, 163, 307, 345, 494, 589
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 3 cut(s) 921, 971, 1050
Cac8I GCNNGC 2 cut(s) 882, 1038
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 3 cut(s) 304, 741, 754
Cfr10I RCCGGY 3 cut(s) 106, 307, 880
Cfr13I GGNCC 6 cut(s) 85, 162, 343, 492, 587, 683
Cfr9I CCCGGG 1 cut(s) 340
CseI GACGC 1 cut(s) 405
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 1 cut(s) 1098
CspAI ACCGGT 1 cut(s) 106
CviAII CATG 3 cut(s) 133, 716, 755
CviQI GTAC 1 cut(s) 1098
DdeI CTNAG 7 cut(s) 32, 320, 498, 904, 1074, 1094, 1105
DpnI GATC 9 cut(s) 99, 156, 378, 484, 521, 834, 872, 909, 1163
DpnII GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
DraI TTTAAA 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 305
EagI CGGCCG 1 cut(s) 305
Ecl136II GAGCTC 1 cut(s) 603
EclXI CGGCCG 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 605
Eco47I GGWCC 1 cut(s) 683
Eco52I CGGCCG 1 cut(s) 305
Eco53kI GAGCTC 1 cut(s) 603
Eco57I CTGAAG 2 cut(s) 897, 1097
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 603
EcoO109I RGGNCCY 2 cut(s) 85, 492
EcoRII CCWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 605
FaeI CATG 3 cut(s) 136, 719, 758
FalI AAGNNNNNCTT 4 cut(s) 141, 173, 622, 654
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 132, 715, 754
FauI CCCGC 1 cut(s) 512
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 305, 693, 742, 899, 1041
FokI GGATG 1 cut(s) 248
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 5 cut(s) 305, 693, 742, 899, 1041
FspAI RTGCGCAY 1 cut(s) 753
FspBI CTAG 3 cut(s) 27, 266, 735
FspI TGCGCA 1 cut(s) 753
GlaI GCGC 3 cut(s) 303, 740, 753
GluI GCNGC 5 cut(s) 305, 693, 742, 899, 1041
GsaI CCCAGC 1 cut(s) 843
GsuI CTGGAG 3 cut(s) 210, 314, 747
HaeIII GGCC 6 cut(s) 86, 163, 307, 345, 494, 589
HapII CCGG 4 cut(s) 107, 308, 341, 881
HgaI GACGC 1 cut(s) 405
HhaI GCGC 3 cut(s) 304, 741, 754
Hin1I GRCGYC 1 cut(s) 416
Hin1II CATG 3 cut(s) 136, 719, 758
Hin6I GCGC 3 cut(s) 302, 739, 752
HinP1I GCGC 3 cut(s) 302, 739, 752
HincII GTYRAC 2 cut(s) 559, 651
HindII GTYRAC 2 cut(s) 559, 651
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 2 cut(s) 623, 994
HpaII CCGG 4 cut(s) 107, 308, 341, 881
HphI GGTGA 4 cut(s) 107, 164, 560, 589
Hpy166II GTNNAC 2 cut(s) 559, 651
Hpy188I TCNGA 6 cut(s) 193, 421, 628, 790, 952, 1108
Hpy188III TCNNGA 6 cut(s) 47, 124, 227, 540, 606, 1168
Hpy8I GTNNAC 2 cut(s) 559, 651
HpyAV CCTTC 6 cut(s) 143, 178, 663, 921, 997, 1118
HpyCH4III ACNGT 2 cut(s) 95, 966
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 5 cut(s) 252, 262, 695, 1043, 1057
HpyF10VI GCNNNNNNNGC 5 cut(s) 229, 268, 310, 1049, 1070
HpyF3I CTNAG 7 cut(s) 32, 320, 498, 904, 1074, 1094, 1105
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 1 cut(s) 416
Hsp92II CATG 3 cut(s) 136, 719, 758
HspAI GCGC 3 cut(s) 302, 739, 752
KroI GCCGGC 1 cut(s) 880
KroNI GCCGGC 1 cut(s) 882
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
LmnI GCTCC 2 cut(s) 126, 672
Lsp1109I GCAGC 4 cut(s) 679, 753, 910, 1027
LweI GCATC 2 cut(s) 138, 184
MabI ACCWGGT 1 cut(s) 240
MaeI CTAG 3 cut(s) 27, 266, 735
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 4 cut(s) 74, 449, 577, 991
MalI GATC 9 cut(s) 99, 156, 378, 484, 521, 834, 872, 909, 1163
MboI GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
MboII GAAGA 8 cut(s) 74, 386, 472, 529, 630, 633, 1130, 1156
MflI RGATCY 4 cut(s) 376, 519, 870, 907
MhlI GDGCHC 2 cut(s) 315, 605
MlyI GAGTC 1 cut(s) 988
MmeI TCCRAC 3 cut(s) 343, 885, 1007
MroNI GCCGGC 1 cut(s) 880
MroXI GAANNNNTTC 2 cut(s) 784, 1137
MseI TTAA 6 cut(s) 275, 408, 924, 1013, 1152, 1192
MslI CAYNNNNRTG 1 cut(s) 1023
MspI CCGG 4 cut(s) 107, 308, 341, 881
MspR9I CCNGG 3 cut(s) 242, 341, 342
MvaI CCWGG 1 cut(s) 242
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 5 cut(s) 229, 268, 310, 1049, 1070
NaeI GCCGGC 1 cut(s) 882
NciI CCSGG 2 cut(s) 341, 342
NdeII GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
NgoMIV GCCGGC 1 cut(s) 880
NlaIII CATG 3 cut(s) 136, 719, 758
NlaIV GGNNCC 2 cut(s) 312, 588
NmeAIII GCCGAG 1 cut(s) 615
NmuCI GTSAC 3 cut(s) 74, 577, 991
NsbI TGCGCA 1 cut(s) 753
NspI RCATGY 1 cut(s) 758
PdiI GCCGGC 1 cut(s) 882
PdmI GAANNNNTTC 2 cut(s) 784, 1137
PfeI GAWTC 1 cut(s) 623
PinAI ACCGGT 1 cut(s) 106
PkrI GCNGC 5 cut(s) 306, 694, 743, 900, 1042
PleI GAGTC 1 cut(s) 988
PpsI GAGTC 1 cut(s) 988
PshBI ATTAAT 1 cut(s) 275
Psp124BI GAGCTC 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 240
PspFI CCCAGC 1 cut(s) 839
PspGI CCWGG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 312, 588
PspPI GGNCC 6 cut(s) 85, 162, 343, 492, 587, 683
PstI CTGCAG 2 cut(s) 697, 1045
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 4 cut(s) 376, 519, 870, 907
RsaI GTAC 1 cut(s) 1099
RsaNI GTAC 1 cut(s) 1098
RseI CAYNNNNRTG 1 cut(s) 1023
SacI GAGCTC 1 cut(s) 605
SaqAI TTAA 6 cut(s) 275, 408, 924, 1013, 1152, 1192
SatI GCNGC 5 cut(s) 305, 693, 742, 899, 1041
Sau3AI GATC 9 cut(s) 97, 154, 376, 482, 519, 832, 870, 907, 1161
Sau96I GGNCC 6 cut(s) 85, 162, 343, 492, 587, 683
SchI GAGTC 1 cut(s) 988
ScrFI CCNGG 3 cut(s) 242, 341, 342
SduI GDGCHC 2 cut(s) 315, 605
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 2 cut(s) 138, 184
SfcI CTRYAG 2 cut(s) 693, 1041
SinI GGWCC 1 cut(s) 683
SmaI CCCGGG 1 cut(s) 342
SmiMI CAYNNNNRTG 1 cut(s) 1023
SmlI CTYRAG 3 cut(s) 47, 523, 604
SmoI CTYRAG 3 cut(s) 47, 523, 604
SsiI CCGC 3 cut(s) 304, 505, 546
SspMI CTAG 3 cut(s) 27, 266, 735
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 3 cut(s) 240, 339, 340
TaaI ACNGT 2 cut(s) 95, 966
TaiI ACGT 1 cut(s) 456
TaqI TCGA 4 cut(s) 100, 285, 481, 1188
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 6 cut(s) 275, 408, 924, 1013, 1152, 1192
Tru9I TTAA 6 cut(s) 275, 408, 924, 1013, 1152, 1192
TscAI CASTG 3 cut(s) 921, 971, 1050
TseFI GTSAC 3 cut(s) 74, 577, 991
TseI GCWGC 4 cut(s) 692, 741, 898, 1040
Tsp45I GTSAC 3 cut(s) 74, 577, 991
TspDTI ATGAA 1 cut(s) 1171
TspGWI ACGGA 1 cut(s) 1131
TspMI CCCGGG 1 cut(s) 340
TspRI CASTG 3 cut(s) 921, 971, 1050
VpaK11BI GGWCC 1 cut(s) 683
VspI ATTAAT 1 cut(s) 275
XapI RAATTY 3 cut(s) 476, 856, 1088
XceI RCATGY 1 cut(s) 758
XmaI CCCGGG 1 cut(s) 340
XmnI GAANNNNTTC 2 cut(s) 784, 1137
XspI CTAG 3 cut(s) 27, 266, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.