Rh6CG054500

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013102
Physical Location & Seq
Reverse (-)
5601010 .. 5601549
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG054500.1

Sequence Viewer

Length: 540 bp
ATGTCATGGATTAAAGCAGCAATGTCATCTGATCTTTCCCCACCTTTTTCTCTTGATAATGTTTCAATGAAGGCTACAAATCCATCAAATAAATCAAGTAAAACTTCTGGTAGTGTACCAAAGGGTACACTTATAGTTAAGAAGCAAAAGAATGATGCTCATTTAGGATTGGTCTCGGAGCGAGAAAACTCGCACGATTGGGTGAAGGGAAGTGCTTTATCCGCAGCTGCAGACCTGGAAAAATCCTTGCATGATGAATGCAGAAAATGGTTTTTGGCTACCTTTGAGAGTTACCTGGATGAGGTTAAGAGCAGAACCGATTCGATGGAATCGGATAGCCAAGTAGCCGAGACTATGTGTCAGATTAAGAAAGTTGGAGACCGGTTGGATGTGATTGTCAGCAAAGAAGATTCTGAATTGGAAGCTTATGGGAGGATCAAGGAGAAGATATATGGGGTACTTCTGAAGAATGTGGAGAGGACTGCTATGGTTATGGAACAAATGAATGCAATATTCAATATAGACAATGGGCAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

179

Amino Acids

19.92

Weight (kDa)

5.69

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6857 PF21647 2 - 164 1.6e-32 Domain of unknown function (DUF6857)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19610
fragaria_vesca FvH4_2g04240
malus_domestica MD05G1099200.v1.1
prunus_persica Prupe.8G143800_v2.0.a1 Prupe.8G143800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253661
rosa_laevigata RLG00000014995
rosa_multiflora Rmu_co8217522.1_g000001 Rmu_sc0001351.1_g000001
rosa_roxburghii Rroxscaffold_7G00211720
rosa_rugosa Rorug05G0545400
rosa_samantha Rh6AG061100 Rh6BG054900 Rh6CG054500 Rh6CG054600 Rh6DG052000 Rh6DG052100
rosa_wichuraiana Rw6G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 222
AclWI GGATC 1 cut(s) 443
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 3 cut(s) 117, 127, 459
AfiI CCNNNNNNNGG 1 cut(s) 301
AgeI ACCGGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 66, 517
AhdI GACNNNNNGTC 1 cut(s) 357
AjnI CCWGG 2 cut(s) 234, 294
AluBI AGCT 2 cut(s) 227, 425
AluI AGCT 2 cut(s) 227, 425
Alw26I GTCTC 3 cut(s) 178, 344, 372
AlwI GGATC 1 cut(s) 443
ApeKI GCWGC 3 cut(s) 17, 224, 227
AsiGI ACCGGT 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 214
BbvI GCAGC 3 cut(s) 29, 214, 236
BccI CCATC 2 cut(s) 91, 319
BciT130I CCWGG 2 cut(s) 236, 296
BcoDI GTCTC 3 cut(s) 178, 344, 372
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 3 cut(s) 18, 225, 228
BlsI GCNGC 3 cut(s) 19, 226, 229
Bme1390I CCNGG 2 cut(s) 236, 296
BmeRI GACNNNNNGTC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 236, 296
BmsI GCATC 1 cut(s) 145
BsaI GGTCTC 2 cut(s) 178, 372
BsaWI WCCGGW 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 301
Bse118I RCCGGY 1 cut(s) 381
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 236, 296
BseGI GGATG 2 cut(s) 304, 394
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMI GCAATG 1 cut(s) 27
BseXI GCAGC 3 cut(s) 29, 214, 236
BshTI ACCGGT 1 cut(s) 381
BsiSI CCGG 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 301
BsmAI GTCTC 3 cut(s) 178, 344, 372
BsmI GAATGC 2 cut(s) 263, 511
Bso31I GGTCTC 2 cut(s) 178, 372
Bsp143I GATC 2 cut(s) 31, 435
BspACI CCGC 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 443
BspTNI GGTCTC 2 cut(s) 178, 372
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 381
BssAI RCCGGY 1 cut(s) 381
BssMI GATC 2 cut(s) 31, 435
Bst2UI CCWGG 2 cut(s) 236, 296
BstENI CCTNNNNNAGG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 304, 394
BstKTI GATC 2 cut(s) 34, 438
BstMAI GTCTC 3 cut(s) 178, 344, 372
BstMBI GATC 2 cut(s) 31, 435
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNI CCWGG 2 cut(s) 236, 296
BstSCI CCNGG 2 cut(s) 234, 294
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 29, 214, 236
BtsCI GGATG 2 cut(s) 304, 394
Cfr10I RCCGGY 1 cut(s) 381
Csp6I GTAC 3 cut(s) 116, 126, 458
CspAI ACCGGT 1 cut(s) 381
CviAII CATG 2 cut(s) 6, 251
CviJI RGCY 6 cut(s) 74, 227, 278, 339, 347, 425
CviKI_1 RGCY 6 cut(s) 74, 227, 278, 339, 347, 425
CviQI GTAC 3 cut(s) 116, 126, 458
DpnI GATC 2 cut(s) 33, 437
DpnII GATC 2 cut(s) 31, 435
DriI GACNNNNNGTC 1 cut(s) 357
Eam1105I GACNNNNNGTC 1 cut(s) 357
Eco31I GGTCTC 2 cut(s) 178, 372
Eco57I CTGAAG 1 cut(s) 485
EcoNI CCTNNNNNAGG 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 234, 294
FaeI CATG 2 cut(s) 9, 254
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FatI CATG 2 cut(s) 5, 250
Fnu4HI GCNGC 3 cut(s) 18, 225, 228
FokI GGATG 2 cut(s) 311, 401
Fsp4HI GCNGC 3 cut(s) 18, 225, 228
GluI GCNGC 3 cut(s) 18, 225, 228
HapII CCGG 1 cut(s) 382
Hin1II CATG 2 cut(s) 9, 254
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 320, 329, 410
HpaII CCGG 1 cut(s) 382
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 116, 128
Hpy188I TCNGA 6 cut(s) 31, 178, 334, 363, 415, 465
Hpy188III TCNNGA 1 cut(s) 53
Hpy8I GTNNAC 2 cut(s) 116, 128
HpyAV CCTTC 2 cut(s) 64, 199
HpyCH4V TGCA 4 cut(s) 230, 250, 261, 509
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 2 cut(s) 9, 254
Kzo9I GATC 2 cut(s) 31, 435
LmnI GCTCC 1 cut(s) 178
LpnPI CCDG 6 cut(s) 93, 221, 248, 281, 308, 395
Lsp1109I GCAGC 3 cut(s) 29, 214, 236
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 1 cut(s) 290
MalI GATC 2 cut(s) 33, 437
MboI GATC 2 cut(s) 31, 435
MboII GAAGA 3 cut(s) 419, 457, 478
MluCI AATT 1 cut(s) 416
MmeI TCCRAC 2 cut(s) 355, 366
MnlI CCTC 3 cut(s) 295, 426, 471
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 4 cut(s) 12, 138, 306, 366
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 236, 296
Mva1269I GAATGC 2 cut(s) 263, 511
MvaI CCWGG 2 cut(s) 236, 296
MwoI GCNNNNNNNGC 1 cut(s) 221
NdeII GATC 2 cut(s) 31, 435
NlaIII CATG 2 cut(s) 9, 254
NmeAIII GCCGAG 1 cut(s) 373
PctI GAATGC 2 cut(s) 263, 511
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 3 cut(s) 320, 329, 410
PinAI ACCGGT 1 cut(s) 381
PkrI GCNGC 3 cut(s) 19, 226, 229
Psp6I CCWGG 2 cut(s) 234, 294
PspGI CCWGG 2 cut(s) 234, 294
PstI CTGCAG 1 cut(s) 232
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 3 cut(s) 117, 127, 459
RsaNI GTAC 3 cut(s) 116, 126, 458
SaqAI TTAA 4 cut(s) 12, 138, 306, 366
SatI GCNGC 3 cut(s) 18, 225, 228
Sau3AI GATC 2 cut(s) 31, 435
ScrFI CCNGG 2 cut(s) 236, 296
SetI ASST 7 cut(s) 46, 229, 237, 284, 297, 306, 427
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 1 cut(s) 416
SsiI CCGC 1 cut(s) 222
SspI AATATT 1 cut(s) 513
StyD4I CCNGG 2 cut(s) 234, 294
TaqI TCGA 1 cut(s) 323
TasI AATT 1 cut(s) 416
TfiI GAWTC 3 cut(s) 320, 329, 410
Tru1I TTAA 4 cut(s) 12, 138, 306, 366
Tru9I TTAA 4 cut(s) 12, 138, 306, 366
TseI GCWGC 3 cut(s) 17, 224, 227
TspDTI ATGAA 3 cut(s) 83, 270, 518
XagI CCTNNNNNAGG 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.