Rmu_sc0001351.1_g000001

Plant protein of unknown function (DUF936)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001351.1
OG0013102
Physical Location & Seq
Reverse (-)
2 .. 2294
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001351.1_g000001.1.cds

Sequence Viewer

Length: 1240 bp
atgcctagcctgagttatggggttcttgagaagcttgttgaagaaatgggaagtgacccaaaggccctgaacggtgatcgaaaaccagtgttattacaaatcaggagcatcatgcctgttttagcagaaggtgatctttggcccaataaagggttttacttgaaggtttcagatgctacacacacaatgtatgtgtcattgcctccagagctggatgacatggttctttgcaacatattgcaactagggcaattaatatatgtcgaaaagctggaggtagcgcggccggtgcccttgcttagaggtataaaccctgtcccgggccaactaattccctgtgttggacagcttgaagatctcatttccattgataagttagtggattttaaaggggcgtctgatttactatttgtaatggaaaagaatagtaacttggggaagaagccacagccaaaatttcgatctttgagggcttccaagacccgcccaagcgagaacatctcaaggatatgtaggtccggaagcggtgatgttgttgacaaggaaatatgtgaggtgacaaaggggtcgagaaaagttggctcaagatatgttgagagtgattctgaaagcaccacatcttcttcctcgttgacacaaactgcgaggagaaggagctggattggaccagaagctgcagatttcccacttgtaaagcatgagataaagccgagtgctaggcgcagccgtagtgcgcatgtgagcatctcaatgattcttgtttctccagttcgttctacaagaagtggttcagatgacaattcaagttgtaaaataaaaagaacaattagctttgatcaagctaggaaatcaagtaaaaactccaacaataggatctcagtgtacgcgaaaaattgtgagcagcccttagatcctccagtgacggttaatttggccattgatagtaactggtcagaaagtaatatacagtggaactcccttcctccaacattagtgactctgggaaaggaggtgttaaggaacaaagatgtttctctgcttgctgcagtggaggctttgcaagaggcttctgttgctgagagattgctgaaatgcctaaggtgtgctaattcattgaccaacatcagtccaattagagatgatgacacaaatctaggcagccctggttccatcaaggaagcattgatacttgcagtagaccggaagaaaaatgcaacatcatggattaaagcagcaatgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF936

Protein Analysis

413

Amino Acids

45.38

Weight (kDa)

9.14

Isoelectric Point (pI)

54.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19610
fragaria_vesca FvH4_2g04240
malus_domestica MD05G1099200.v1.1
prunus_persica Prupe.8G143800_v2.0.a1 Prupe.8G143800_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0253661
rosa_laevigata RLG00000014995
rosa_multiflora Rmu_co8217522.1_g000001 Rmu_sc0001351.1_g000001
rosa_roxburghii Rroxscaffold_7G00211720
rosa_rugosa Rorug05G0545400
rosa_samantha Rh6AG061100 Rh6BG054900 Rh6CG054500 Rh6CG054600 Rh6DG052000 Rh6DG052100
rosa_wichuraiana Rw6G005430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 565
Acc16I TGCGCA 1 cut(s) 735
AccB1I GGYRCC 1 cut(s) 289
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 2 cut(s) 283, 887
AccIII TCCGGA 1 cut(s) 518
AciI CCGC 3 cut(s) 283, 484, 525
AclWI GGATC 2 cut(s) 881, 905
AcoI YGGCCR 2 cut(s) 284, 933
AcsI RAATTY 1 cut(s) 455
AcyI GRCGYC 1 cut(s) 395
AfaI GTAC 1 cut(s) 884
AfiI CCNNNNNNNGG 6 cut(s) 149, 150, 319, 320, 341, 870
AgsI TTSAA 4 cut(s) 41, 163, 353, 804
AjnI CCWGG 1 cut(s) 1162
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 8 cut(s) 34, 211, 271, 349, 657, 674, 831, 842
AluI AGCT 8 cut(s) 34, 211, 271, 349, 657, 674, 831, 842
AlwI GGATC 2 cut(s) 881, 905
AlwNI CAGNNNCTG 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 5 cut(s) 63, 140, 284, 322, 933
ApeKI GCWGC 6 cut(s) 674, 723, 901, 1043, 1158, 1232
ApoI RAATTY 1 cut(s) 455
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AseI ATTAAT 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 787
AspLEI GCGC 3 cut(s) 283, 723, 736
AspS9I GGNCC 5 cut(s) 64, 141, 322, 516, 665
AsuC2I CCSGG 2 cut(s) 320, 321
AsuHPI GGTGA 4 cut(s) 86, 143, 539, 568
AvaI CYCGRG 1 cut(s) 319
AvaII GGWCC 2 cut(s) 516, 665
AxyI CCTNAGG 1 cut(s) 1097
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 935
BanI GGYRCC 1 cut(s) 289
BarI GAAGNNNNNNTAC 2 cut(s) 1170, 1202
BbvI GCAGC 5 cut(s) 661, 735, 913, 1030, 1170
BccI CCATC 1 cut(s) 1178
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 1 cut(s) 1164
BclI TGATCA 1 cut(s) 835
BcnI CCSGG 2 cut(s) 320, 321
BfaI CTAG 5 cut(s) 6, 245, 717, 843, 1154
BfmI CTRYAG 2 cut(s) 675, 1044
BglII AGATCT 1 cut(s) 355
BisI GCNGC 7 cut(s) 284, 675, 724, 902, 1044, 1159, 1233
BlsI GCNGC 7 cut(s) 285, 676, 725, 903, 1045, 1160, 1234
Bme1390I CCNGG 3 cut(s) 320, 321, 1164
Bme18I GGWCC 2 cut(s) 516, 665
BmeT110I CYCGRG 1 cut(s) 319
BmgT120I GGNCC 5 cut(s) 64, 141, 322, 516, 665
BmiI GGNNCC 2 cut(s) 291, 1168
BmrFI CCNGG 3 cut(s) 320, 321, 1164
BmsI GCATC 3 cut(s) 117, 163, 753
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 4 cut(s) 189, 293, 750, 900
BpuEI CTTGAG 3 cut(s) 47, 487, 568
BpuMI CCSGG 2 cut(s) 320, 321
BsaHI GRCGYC 1 cut(s) 395
BsaJI CCNNGG 2 cut(s) 319, 1162
BsaWI WCCGGW 2 cut(s) 518, 1200
Bsc4I CCNNNNNNNGG 6 cut(s) 149, 150, 319, 320, 341, 870
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 4 cut(s) 86, 767, 917, 953
Bse21I CCTNAGG 1 cut(s) 1097
Bse3DI GCAATG 1 cut(s) 197
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 1 cut(s) 1164
BseDI CCNNGG 2 cut(s) 319, 1162
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 6 cut(s) 149, 150, 319, 320, 341, 870
BseMI GCAATG 1 cut(s) 197
BseMII CTCAG 2 cut(s) 891, 1068
BseNI ACTGG 4 cut(s) 86, 767, 917, 953
BseRI GAGGAG 1 cut(s) 661
BseSI GKGCMC 1 cut(s) 294
BseX3I CGGCCG 1 cut(s) 284
BseXI GCAGC 5 cut(s) 661, 735, 913, 1030, 1170
Bsh1236I CGCG 2 cut(s) 283, 887
Bsh1285I CGRYCG 1 cut(s) 287
BshFI GGCC 5 cut(s) 65, 142, 286, 324, 935
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 4 cut(s) 287, 320, 519, 1201
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 6 cut(s) 149, 150, 319, 320, 341, 870
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 5 cut(s) 65, 142, 286, 324, 935
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 294
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
BspACI CCGC 3 cut(s) 283, 484, 525
BspANI GGCC 5 cut(s) 65, 142, 286, 324, 935
BspCNI CTCAG 2 cut(s) 890, 1069
BspEI TCCGGA 1 cut(s) 518
BspFNI CGCG 2 cut(s) 283, 887
BspLI GGNNCC 2 cut(s) 291, 1168
BspMAI CTGCAG 2 cut(s) 679, 1048
BspPI GGATC 2 cut(s) 881, 905
BspT107I GGYRCC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 197
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 4 cut(s) 86, 767, 917, 953
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 319, 1162
BssMI GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
BssNI GRCGYC 1 cut(s) 395
Bst2UI CCWGG 1 cut(s) 1164
Bst4CI ACNGT 3 cut(s) 74, 925, 969
BstACI GRCGYC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 1041
BstDEI CTNAG 6 cut(s) 11, 299, 877, 907, 1077, 1097
BstF5I GGATG 1 cut(s) 220
BstFNI CGCG 2 cut(s) 283, 887
BstHHI GCGC 3 cut(s) 283, 723, 736
BstKTI GATC 7 cut(s) 79, 136, 358, 464, 838, 876, 913
BstMBI GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
BstMCI CGRYCG 1 cut(s) 287
BstMWI GCNNNNNNNGC 5 cut(s) 208, 247, 289, 1052, 1073
BstNI CCWGG 1 cut(s) 1164
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 3 cut(s) 318, 319, 1162
BstSFI CTRYAG 2 cut(s) 675, 1044
BstSLI GKGCMC 1 cut(s) 294
BstUI CGCG 2 cut(s) 283, 887
BstV1I GCAGC 5 cut(s) 661, 735, 913, 1030, 1170
BstX2I RGATCY 3 cut(s) 355, 873, 910
BstYI RGATCY 3 cut(s) 355, 873, 910
BstZI CGGCCG 1 cut(s) 284
Bsu36I CCTNAGG 1 cut(s) 1097
BsuRI GGCC 5 cut(s) 65, 142, 286, 324, 935
BtsCI GGATG 1 cut(s) 220
BtsI GCAGTG 1 cut(s) 1053
BtsIMutI CAGTG 5 cut(s) 93, 885, 924, 974, 1053
Cac8I GCNNGC 1 cut(s) 1041
CaiI CAGNNNCTG 1 cut(s) 674
CfoI GCGC 3 cut(s) 283, 723, 736
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 5 cut(s) 64, 141, 322, 516, 665
Cfr9I CCCGGG 1 cut(s) 319
CseI GACGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 883
CviAII CATG 5 cut(s) 112, 220, 698, 737, 1221
CviQI GTAC 1 cut(s) 883
DdeI CTNAG 6 cut(s) 11, 299, 877, 907, 1077, 1097
DpnI GATC 7 cut(s) 78, 135, 357, 463, 837, 875, 912
DpnII GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
DraI TTTAAA 1 cut(s) 388
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 2 cut(s) 284, 933
EagI CGGCCG 1 cut(s) 284
EclXI CGGCCG 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 516, 665
Eco52I CGGCCG 1 cut(s) 284
Eco81I CCTNAGG 1 cut(s) 1097
Eco88I CYCGRG 1 cut(s) 319
EcoO109I RGGNCCY 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 1162
FaeI CATG 5 cut(s) 115, 223, 701, 740, 1224
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 1 cut(s) 302
FatI CATG 5 cut(s) 111, 219, 697, 736, 1220
FauI CCCGC 1 cut(s) 491
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 7 cut(s) 284, 675, 724, 902, 1044, 1159, 1233
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 7 cut(s) 284, 675, 724, 902, 1044, 1159, 1233
FspAI RTGCGCAY 1 cut(s) 735
FspBI CTAG 5 cut(s) 6, 245, 717, 843, 1154
FspI TGCGCA 1 cut(s) 735
GlaI GCGC 3 cut(s) 282, 722, 735
GluI GCNGC 7 cut(s) 284, 675, 724, 902, 1044, 1159, 1233
GsuI CTGGAG 4 cut(s) 189, 293, 750, 900
HaeIII GGCC 5 cut(s) 65, 142, 286, 324, 935
HapII CCGG 4 cut(s) 287, 320, 519, 1201
HgaI GACGC 1 cut(s) 384
HhaI GCGC 3 cut(s) 283, 723, 736
Hin1I GRCGYC 1 cut(s) 395
Hin1II CATG 5 cut(s) 115, 223, 701, 740, 1224
Hin6I GCGC 3 cut(s) 281, 721, 734
HinP1I GCGC 3 cut(s) 281, 721, 734
HincII GTYRAC 2 cut(s) 538, 633
HindII GTYRAC 2 cut(s) 538, 633
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 3 cut(s) 602, 754, 997
HpaII CCGG 4 cut(s) 287, 320, 519, 1201
HphI GGTGA 4 cut(s) 86, 143, 539, 568
Hpy166II GTNNAC 4 cut(s) 538, 633, 883, 1198
Hpy188I TCNGA 5 cut(s) 172, 400, 607, 793, 955
Hpy188III TCNNGA 6 cut(s) 26, 103, 206, 519, 570, 585
Hpy8I GTNNAC 4 cut(s) 538, 633, 883, 1198
HpyAV CCTTC 4 cut(s) 122, 157, 645, 989
HpyCH4III ACNGT 3 cut(s) 74, 925, 969
HpyCH4V TGCA 7 cut(s) 231, 241, 677, 1046, 1060, 1193, 1214
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 247, 289, 1052, 1073
HpyF3I CTNAG 6 cut(s) 11, 299, 877, 907, 1077, 1097
Hsp92I GRCGYC 1 cut(s) 395
Hsp92II CATG 5 cut(s) 115, 223, 701, 740, 1224
HspAI GCGC 3 cut(s) 281, 721, 734
Kpn2I TCCGGA 1 cut(s) 518
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
LmnI GCTCC 2 cut(s) 105, 654
Lsp1109I GCAGC 5 cut(s) 661, 735, 913, 1030, 1170
LweI GCATC 3 cut(s) 117, 163, 753
MaeI CTAG 5 cut(s) 6, 245, 717, 843, 1154
MaeIII GTNAC 6 cut(s) 53, 428, 556, 919, 944, 994
MalI GATC 7 cut(s) 78, 135, 357, 463, 837, 875, 912
MboI GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
MboII GAAGA 6 cut(s) 53, 365, 451, 612, 615, 1216
MflI RGATCY 3 cut(s) 355, 873, 910
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 9 cut(s) 251, 330, 455, 799, 825, 892, 928, 1108, 1131
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 1 cut(s) 991
MmeI TCCRAC 3 cut(s) 322, 888, 1010
Mox20I TGGCCA 1 cut(s) 935
MroI TCCGGA 1 cut(s) 518
MroXI GAANNNNTTC 1 cut(s) 787
MscI TGGCCA 1 cut(s) 935
MseI TTAA 5 cut(s) 254, 387, 927, 1016, 1227
MslI CAYNNNNRTG 1 cut(s) 749
Msp20I TGGCCA 1 cut(s) 935
MspI CCGG 4 cut(s) 287, 320, 519, 1201
MspR9I CCNGG 3 cut(s) 320, 321, 1164
MvaI CCWGG 1 cut(s) 1164
MvnI CGCG 2 cut(s) 283, 887
MwoI GCNNNNNNNGC 5 cut(s) 208, 247, 289, 1052, 1073
NciI CCSGG 2 cut(s) 320, 321
NdeII GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
NlaIII CATG 5 cut(s) 115, 223, 701, 740, 1224
NlaIV GGNNCC 2 cut(s) 291, 1168
NmeAIII GCCGAG 1 cut(s) 735
NmuCI GTSAC 4 cut(s) 53, 556, 919, 994
NsbI TGCGCA 1 cut(s) 735
NspI RCATGY 1 cut(s) 740
PdmI GAANNNNTTC 1 cut(s) 787
PfeI GAWTC 2 cut(s) 602, 754
PkrI GCNGC 7 cut(s) 285, 676, 725, 903, 1045, 1160, 1234
PleI GAGTC 1 cut(s) 991
PpsI GAGTC 1 cut(s) 991
PshBI ATTAAT 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 1162
PspGI CCWGG 1 cut(s) 1162
PspN4I GGNNCC 2 cut(s) 291, 1168
PspPI GGNCC 5 cut(s) 64, 141, 322, 516, 665
PstI CTGCAG 2 cut(s) 679, 1048
PstNI CAGNNNCTG 1 cut(s) 674
PsuI RGATCY 3 cut(s) 355, 873, 910
RsaI GTAC 1 cut(s) 884
RsaNI GTAC 1 cut(s) 883
RseI CAYNNNNRTG 1 cut(s) 749
SaqAI TTAA 5 cut(s) 254, 387, 927, 1016, 1227
SatI GCNGC 7 cut(s) 284, 675, 724, 902, 1044, 1159, 1233
Sau3AI GATC 7 cut(s) 76, 133, 355, 461, 835, 873, 910
Sau96I GGNCC 5 cut(s) 64, 141, 322, 516, 665
SchI GAGTC 1 cut(s) 991
ScrFI CCNGG 3 cut(s) 320, 321, 1164
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 117, 163, 753
SfcI CTRYAG 2 cut(s) 675, 1044
SinI GGWCC 2 cut(s) 516, 665
SmaI CCCGGG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 749
SmlI CTYRAG 3 cut(s) 26, 502, 583
SmoI CTYRAG 3 cut(s) 26, 502, 583
Sse9I AATT 9 cut(s) 251, 330, 455, 799, 825, 892, 928, 1108, 1131
SsiI CCGC 3 cut(s) 283, 484, 525
SspMI CTAG 5 cut(s) 6, 245, 717, 843, 1154
StyD4I CCNGG 3 cut(s) 318, 319, 1162
TaaI ACNGT 3 cut(s) 74, 925, 969
TaqI TCGA 4 cut(s) 79, 264, 460, 569
TasI AATT 9 cut(s) 251, 330, 455, 799, 825, 892, 928, 1108, 1131
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 2 cut(s) 602, 754
Tru1I TTAA 5 cut(s) 254, 387, 927, 1016, 1227
Tru9I TTAA 5 cut(s) 254, 387, 927, 1016, 1227
TscAI CASTG 5 cut(s) 93, 885, 924, 974, 1053
TseFI GTSAC 4 cut(s) 53, 556, 919, 994
TseI GCWGC 6 cut(s) 674, 723, 901, 1043, 1158, 1232
Tsp45I GTSAC 4 cut(s) 53, 556, 919, 994
TspDTI ATGAA 1 cut(s) 1101
TspMI CCCGGG 1 cut(s) 319
TspRI CASTG 5 cut(s) 93, 885, 924, 974, 1053
VpaK11BI GGWCC 2 cut(s) 516, 665
VspI ATTAAT 1 cut(s) 254
XapI RAATTY 1 cut(s) 455
XceI RCATGY 1 cut(s) 740
XmaI CCCGGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 1197
XmnI GAANNNNTTC 1 cut(s) 787
XspI CTAG 5 cut(s) 6, 245, 717, 843, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.