Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007651

Physical Location & Seq

Genomic Coordinates Reverse (-)

24612108 .. 24621447

Gene Structure 9340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1123800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGATTTTGACGAGTATGATTATTTAGAGAAAACAGTTGAAAATCCTGAACCACCGAAATCAAAGGAACCTGCAAATGGTGGTGAGGAAACATTGAAATCTGGAGAGAAAGGTCGCAGCCGAAGTTCAAAGCACAAGGGTGACGAGAAAGGTCACGATGAGGAACGTCACTCAAAGCGCTCAAAATCTGGAGACGAGTCACGTGAACGTGATAATGATCGACACAGAGAGAGGGGATCTTCTCGTCACCGCTCACAGTCAAGAGACAGAGAAAAGGATCGCCACAGAAGTAGCCGGGATCATAGAGGTAGGGAAGACAGAGAAAGGGAGGAAAGAAATGGTAAGGAGAGAGATAGGGACAGAGACAAAGAGCGGGATCCTGGTCGTGATAGAGACAGGAGAGAACGTGACCGCGAGGGTGACAGGGACCGGGAGAAGGATAAAGAGCGGTCACGTCGAAGCAGGAGCCATTCAGAAAGGCATCGAAGTGATCGGGATGAAAGAGAAAGGAGCCGGGAGGTGGAGCATAAAGAAAGAGACAAGGAGAAGGATTTGAGGGAGCGGGAAAAAGAAAATAGAAGACATAAAGACAAAAAGGAAGAAGGGACAGAACCTGAGGCTGATCCTGAAAGAGATCAGAGGACAGTATTTGCGTATCAGATTTGTCTGAAGGCAGATGAAAGAGATGTATATGAGTTCTTCTCAAGGGCTGGGAAGGTCCGCGATGTACGTCTTATTATGGACCGCAATTCAAGACGTTCAAAGGGAGTTGGGTATATTGAGTTTTATGATGCGATGTCAGTACCTATGGCGATCGCACTCTCTGGTCAGCCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAGGCTGAGAAGAATCTAGTTCAGTCAACAACATCTGTTGTCACTGGACCAGGTGGGATGATAGGCCCATATTCTGGTGGAGCTAGAAGGCTGTATGTTGGAAATCTCCATAGCAATATAAAAGAAGATGATCTCCGCCAGGTTTTTGGAGCATTTGGTCCTGTAGAACTGGTTCAGTTGCCTCTTGATGAAACTAATAACTGCAAAGGTTTTGGATTTGTGCAGTTTGCACGTCTTGAAGATGCTAGAAATTCTCTGAGTTTGAATGGACAATTGGAGATTGCAGGTCGAGTAATTAAGGTGTCAGCTGTTACAGACCAAGCTGGAATGCAAGATCTTGGAGCAAATGCTGGTGATTTTGATGATGATGAAGGCGGTGGCTTGTCATTGAATGCGCGCTCTCGAGCCATGCTCATGCAGAAATTGGACCGTAGTGGAACTGCACCAAGTATTGCTGGTCCCTTAGGCACACCTGTTGTCAATAGCGCAGGCGTTTCCTTACCGATGGCACCAATCCTGGGAGCTGCACCGGTGGTTTCTTCTCTTGTTCCTCCCATTGCCTCTATTCCTGGTTTTGCCGGACTTGGTGTTGCAGGGCTTCAAATTCCGACAGCTACTCTTCCTTCTGTAGACACAATTGGTGTTCCAAGCGAATGTTTACTGTTGAAAAATATGTTTGATCCCACAGCTGAGTCGGAACCAAACTTTGACTTGGACATTAAAGATGATGTTCAGGATGAGTGTTCGAAATACGGTACTTTGAAGCATATATATGTGGACAAGAATACTGCTGGACATGTGTACTTGCGATTTGAAAATACACAAGCTGCTATTAGTGCTCGGCATGTTCTCCATGGAAGGTGGTTTGCTGGAAAGATGATCGAGGCAACATTCATGTTGCCCCAGACCTACGAGGCTAAATTCCCGGAAAGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

602

Amino Acids

67.84

Weight (kDa)

6.52

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	225 - 283	4.8e-09	RNA recognition motif
RRM_1	PF00076	320 - 389	1.1e-18	RNA recognition motif
RBM39linker	PF15519	409 - 525	2.3e-18	linker between RRM2 and RRM3 domains in RBM39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16940 AT2G16940 AT2G16940 AT2G16940 AT2G16940
fragaria_vesca	FvH4_2g15540
malus_domestica	MD05G1123800.v1.1 MD10G1126500.v1.1
prunus_persica	Prupe.8G167600_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1
pyrus_communis	pycom05g11800
rosa_chinensis	RchiOBHm_Chr6g0278711
rosa_laevigata	RLG00000013199
rosa_multiflora	Rmu_sc0000531.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189690 Rroxscaffold_7G00189950
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227200 Rh6BG232600 Rh6CG234800 Rh6DG226400
rosa_wichuraiana	Rw6G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	79, 1142
AccB1I	GGYRCC	1 cut(s)	1375
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccBSI	CCGCTC	4 cut(s)	252, 373, 448, 562
AccI	GTMKAC	1 cut(s)	1497
AccII	CGCG	3 cut(s)	414, 723, 1264
AciI	CCGC	9 cut(s)	250, 373, 412, 448, 562, 721, 745, 1003, 1242
AclWI	GGATC	7 cut(s)	244, 285, 306, 371, 384, 617, 1541
AcsI	RAATTY	3 cut(s)	1117, 1470, 1787
AcuI	CTGAAG	1 cut(s)	689
AcvI	CACGTG	1 cut(s)	203
AfaI	GTAC	4 cut(s)	729, 804, 1624, 1670
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	6 cut(s)	77, 436, 520, 839, 941, 1385
AflIII	ACRYGT	1 cut(s)	1663
AgeI	ACCGGT	1 cut(s)	1396
AjiI	CACGTC	2 cut(s)	455, 1100
AjnI	CCWGG	5 cut(s)	379, 916, 1005, 1383, 1435
AjuI	GAANNNNNNNTTGG	2 cut(s)	1124, 1156
AleI	CACNNNNGTG	1 cut(s)	138
AluBI	AGCT	7 cut(s)	950, 1175, 1190, 1391, 1481, 1556, 1694
AluI	AGCT	7 cut(s)	950, 1175, 1190, 1391, 1481, 1556, 1694
Alw21I	GWGCWC	1 cut(s)	1708
Alw26I	GTCTC	5 cut(s)	186, 258, 357, 387, 531
AlwI	GGATC	7 cut(s)	244, 285, 306, 371, 384, 617, 1541
AlwNI	CAGNNNCTG	2 cut(s)	614, 872
Ama87I	CYCGRG	1 cut(s)	1269
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	3 cut(s)	117, 1391, 1694
ApoI	RAATTY	3 cut(s)	1117, 1470, 1787
AsiGI	ACCGGT	1 cut(s)	1396
AsiSI	GCGATCGC	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	1038
AspLEI	GCGC	4 cut(s)	180, 1264, 1266, 1355
AspS9I	GGNCC	8 cut(s)	427, 718, 742, 914, 932, 1025, 1294, 1325
AsuC2I	CCSGG	4 cut(s)	296, 431, 515, 1793
AsuHPI	GGTGA	6 cut(s)	95, 152, 239, 431, 868, 1232
AsuII	TTCGAA	1 cut(s)	1613
AvaI	CYCGRG	1 cut(s)	1269
AvaII	GGWCC	7 cut(s)	427, 718, 742, 914, 1025, 1294, 1325
AxyI	CCTNAGG	2 cut(s)	615, 1330
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	1375
BbrPI	CACGTG	1 cut(s)	203
BbsI	GAAGAC	2 cut(s)	321, 586
Bbv12I	GWGCWC	1 cut(s)	1708
BbvI	GCAGC	3 cut(s)	129, 1378, 1681
BccI	CCATC	3 cut(s)	847, 871, 1366
BciT130I	CCWGG	5 cut(s)	381, 918, 1007, 1385, 1437
BcnI	CCSGG	4 cut(s)	296, 431, 515, 1793
BcoDI	GTCTC	5 cut(s)	186, 258, 357, 387, 531
BfaI	CTAG	3 cut(s)	884, 951, 1113
BfmI	CTRYAG	2 cut(s)	1029, 1494
BfoI	RGCGCY	1 cut(s)	181
BfuAI	ACCTGC	2 cut(s)	79, 1142
BglII	AGATCT	1 cut(s)	1201
BisI	GCNGC	3 cut(s)	118, 1392, 1695
BlsI	GCNGC	3 cut(s)	119, 1393, 1696
Bme1390I	CCNGG	9 cut(s)	296, 381, 431, 515, 918, 1007, 1385, 1437, 1793
Bme18I	GGWCC	7 cut(s)	427, 718, 742, 914, 1025, 1294, 1325
BmeT110I	CYCGRG	1 cut(s)	1269
BmgBI	CACGTC	2 cut(s)	455, 1100
BmgT120I	GGNCC	8 cut(s)	427, 718, 742, 914, 932, 1025, 1294, 1325
BmiI	GGNNCC	8 cut(s)	69, 378, 428, 467, 512, 1327, 1377, 1566
BmrFI	CCNGG	9 cut(s)	296, 381, 431, 515, 918, 1007, 1385, 1437, 1793
BmsI	GCATC	3 cut(s)	490, 781, 1099
BpiI	GAAGAC	2 cut(s)	321, 586
BplI	GAGNNNNNCTC	4 cut(s)	686, 718, 1263, 1295
BpmI	CTGGAG	2 cut(s)	123, 210
Bpu14I	TTCGAA	1 cut(s)	1613
BpuEI	CTTGAG	1 cut(s)	688
BpuMI	CCSGG	4 cut(s)	296, 431, 515, 1793
BsaAI	YACGTR	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	2 cut(s)	1384, 1720
BsaWI	WCCGGW	1 cut(s)	1396
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 436, 520, 839, 941, 1385
Bse118I	RCCGGY	1 cut(s)	1396
Bse1I	ACTGG	3 cut(s)	848, 916, 1041
Bse21I	CCTNAGG	2 cut(s)	615, 1330
Bse3DI	GCAATG	1 cut(s)	1422
Bse8I	GATNNNNATC	1 cut(s)	216
BseBI	CCWGG	5 cut(s)	381, 918, 1007, 1385, 1437
BseDI	CCNNGG	2 cut(s)	1384, 1720
BseGI	GGATG	3 cut(s)	502, 930, 1609
BseJI	GATNNNNATC	1 cut(s)	216
BseLI	CCNNNNNNNGG	6 cut(s)	77, 436, 520, 839, 941, 1385
BseMI	GCAATG	1 cut(s)	1422
BseMII	CTCAG	4 cut(s)	606, 864, 1115, 1548
BseNI	ACTGG	3 cut(s)	848, 916, 1041
BsePI	GCGCGC	1 cut(s)	1262
BseXI	GCAGC	3 cut(s)	129, 1378, 1681
BseYI	CCCAGC	1 cut(s)	710
BsgI	GTGCAG	3 cut(s)	1109, 1293, 1377
Bsh1236I	CGCG	3 cut(s)	414, 723, 1264
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	933
BshNI	GGYRCC	1 cut(s)	1375
BshTI	ACCGGT	1 cut(s)	1396
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	1708
BsiHKCI	CYCGRG	1 cut(s)	1269
BsiSI	CCGG	6 cut(s)	295, 430, 514, 1397, 1446, 1793
BslFI	GGGAC	4 cut(s)	371, 440, 619, 1311
BslI	CCNNNNNNNGG	6 cut(s)	77, 436, 520, 839, 941, 1385
BsmAI	GTCTC	5 cut(s)	186, 258, 357, 387, 531
BsmBI	CGTCTC	1 cut(s)	186
BsmFI	GGGAC	4 cut(s)	371, 440, 619, 1311
BsmI	GAATGC	2 cut(s)	1200, 1264
BsnI	GGCC	1 cut(s)	933
BsoBI	CYCGRG	1 cut(s)	1269
Bsp119I	TTCGAA	1 cut(s)	1613
Bsp1286I	GDGCHC	1 cut(s)	1708
Bsp19I	CCATGG	1 cut(s)	1720
BspACI	CCGC	9 cut(s)	250, 373, 412, 448, 562, 721, 745, 1003, 1242
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	4 cut(s)	607, 865, 1116, 1549
BspFNI	CGCG	3 cut(s)	414, 723, 1264
BspLI	GGNNCC	8 cut(s)	69, 378, 428, 467, 512, 1327, 1377, 1566
BspMI	ACCTGC	2 cut(s)	79, 1142
BspPI	GGATC	7 cut(s)	244, 285, 306, 371, 384, 617, 1541
BspT104I	TTCGAA	1 cut(s)	1613
BspT107I	GGYRCC	1 cut(s)	1375
BsrBI	CCGCTC	4 cut(s)	252, 373, 448, 562
BsrDI	GCAATG	1 cut(s)	1422
BsrFI	RCCGGY	1 cut(s)	1396
BsrI	ACTGG	3 cut(s)	848, 916, 1041
BssAI	RCCGGY	1 cut(s)	1396
BssECI	CCNNGG	2 cut(s)	1384, 1720
BssHII	GCGCGC	1 cut(s)	1262
BssT1I	CCWWGG	1 cut(s)	1720
Bst2UI	CCWGG	5 cut(s)	381, 918, 1007, 1385, 1437
Bst4CI	ACNGT	6 cut(s)	37, 258, 646, 1298, 1530, 1622
Bst6I	CTCTTC	2 cut(s)	840, 1491
BstBAI	YACGTR	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	1613
BstC8I	GCNNGC	2 cut(s)	1264, 1357
BstDEI	CTNAG	5 cut(s)	615, 873, 1124, 1330, 1557
BstDSI	CCRYGG	1 cut(s)	1720
BstF5I	GGATG	3 cut(s)	502, 930, 1609
BstFNI	CGCG	3 cut(s)	414, 723, 1264
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	4 cut(s)	180, 1264, 1266, 1355
BstMAI	GTCTC	5 cut(s)	186, 258, 357, 387, 531
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	1 cut(s)	1703
BstNI	CCWGG	5 cut(s)	381, 918, 1007, 1385, 1437
BstNSI	RCATGY	2 cut(s)	1667, 1715
BstSCI	CCNGG	9 cut(s)	294, 379, 429, 513, 916, 1005, 1383, 1435, 1791
BstSFI	CTRYAG	2 cut(s)	1029, 1494
BstUI	CGCG	3 cut(s)	414, 723, 1264
BstV1I	GCAGC	3 cut(s)	129, 1378, 1681
BstV2I	GAAGAC	2 cut(s)	321, 586
BstX2I	RGATCY	3 cut(s)	236, 376, 1201
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	3 cut(s)	236, 376, 1201
Bsu36I	CCTNAGG	2 cut(s)	615, 1330
BsuRI	GGCC	1 cut(s)	933
BtgI	CCRYGG	1 cut(s)	1720
BtgZI	GCGATG	2 cut(s)	738, 809
BtrI	CACGTC	2 cut(s)	455, 1100
BtsCI	GGATG	3 cut(s)	502, 930, 1609
BtsIMutI	CAGTG	2 cut(s)	855, 909
BveI	ACCTGC	2 cut(s)	79, 1142
Cac8I	GCNNGC	2 cut(s)	1264, 1357
CaiI	CAGNNNCTG	2 cut(s)	614, 872
CfoI	GCGC	4 cut(s)	180, 1264, 1266, 1355
Cfr10I	RCCGGY	1 cut(s)	1396
Cfr13I	GGNCC	8 cut(s)	427, 718, 742, 914, 932, 1025, 1294, 1325
CsiI	ACCWGGT	1 cut(s)	916
Csp6I	GTAC	4 cut(s)	728, 803, 1623, 1669
CspAI	ACCGGT	1 cut(s)	1396
CviAII	CATG	6 cut(s)	1276, 1282, 1664, 1712, 1721, 1762
CviQI	GTAC	4 cut(s)	728, 803, 1623, 1669
DdeI	CTNAG	5 cut(s)	615, 873, 1124, 1330, 1557
Eam1104I	CTCTTC	2 cut(s)	840, 1491
EarI	CTCTTC	2 cut(s)	840, 1491
EciI	GGCGGA	1 cut(s)	992
Eco130I	CCWWGG	1 cut(s)	1720
Eco47I	GGWCC	7 cut(s)	427, 718, 742, 914, 1025, 1294, 1325
Eco47III	AGCGCT	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	689
Eco72I	CACGTG	1 cut(s)	203
Eco81I	CCTNAGG	2 cut(s)	615, 1330
Eco88I	CYCGRG	1 cut(s)	1269
EcoRII	CCWGG	5 cut(s)	379, 916, 1005, 1383, 1435
EcoT14I	CCWWGG	1 cut(s)	1720
ErhI	CCWWGG	1 cut(s)	1720
Esp3I	CGTCTC	1 cut(s)	186
FaeI	CATG	6 cut(s)	1279, 1285, 1667, 1715, 1724, 1765
FaqI	GGGAC	4 cut(s)	371, 440, 619, 1311
FatI	CATG	6 cut(s)	1275, 1281, 1663, 1711, 1720, 1761
FauI	CCCGC	2 cut(s)	366, 555
FblI	GTMKAC	1 cut(s)	1497
Fnu4HI	GCNGC	3 cut(s)	118, 1392, 1695
FokI	GGATG	3 cut(s)	509, 937, 1616
Fsp4HI	GCNGC	3 cut(s)	118, 1392, 1695
FspBI	CTAG	3 cut(s)	884, 951, 1113
GlaI	GCGC	4 cut(s)	179, 1263, 1265, 1354
GluI	GCNGC	3 cut(s)	118, 1392, 1695
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	2 cut(s)	123, 210
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	6 cut(s)	295, 430, 514, 1397, 1446, 1793
HhaI	GCGC	4 cut(s)	180, 1264, 1266, 1355
Hin1II	CATG	6 cut(s)	1279, 1285, 1667, 1715, 1724, 1765
Hin6I	GCGC	4 cut(s)	178, 1262, 1264, 1353
HinP1I	GCGC	4 cut(s)	178, 1262, 1264, 1353
HincII	GTYRAC	2 cut(s)	845, 894
HindII	GTYRAC	2 cut(s)	845, 894
HinfI	GANTC	3 cut(s)	197, 880, 1559
HpaII	CCGG	6 cut(s)	295, 430, 514, 1397, 1446, 1793
HphI	GGTGA	6 cut(s)	95, 152, 239, 431, 868, 1232
Hpy166II	GTNNAC	7 cut(s)	206, 845, 894, 1498, 1526, 1645, 1669
Hpy188I	TCNGA	8 cut(s)	475, 639, 660, 669, 868, 1125, 1476, 1564
Hpy8I	GTNNAC	7 cut(s)	206, 845, 894, 1498, 1526, 1645, 1669
Hpy99I	CGWCG	1 cut(s)	459
HpyAV	CCTTC	9 cut(s)	430, 541, 596, 664, 709, 948, 1232, 1500, 1719
HpyCH4III	ACNGT	6 cut(s)	37, 258, 646, 1298, 1530, 1622
HpyCH4IV	ACGT	8 cut(s)	166, 202, 208, 406, 454, 730, 757, 1099
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1703
HpyF3I	CTNAG	5 cut(s)	615, 873, 1124, 1330, 1557
HpySE526I	ACGT	8 cut(s)	166, 202, 208, 406, 454, 730, 757, 1099
Hsp92II	CATG	6 cut(s)	1279, 1285, 1667, 1715, 1724, 1765
HspAI	GCGC	4 cut(s)	178, 1262, 1264, 1353
LmnI	GCTCC	8 cut(s)	465, 510, 523, 559, 947, 1016, 1208, 1388
Lsp1109I	GCAGC	3 cut(s)	129, 1378, 1681
LweI	GCATC	3 cut(s)	490, 781, 1099
MabI	ACCWGGT	1 cut(s)	916
MaeI	CTAG	3 cut(s)	884, 951, 1113
MaeII	ACGT	8 cut(s)	166, 202, 208, 406, 454, 730, 757, 1099
MbiI	CCGCTC	4 cut(s)	252, 373, 448, 562
MfeI	CAATTG	2 cut(s)	1139, 1503
MflI	RGATCY	3 cut(s)	236, 376, 1201
MhlI	GDGCHC	1 cut(s)	1708
MluCI	AATT	8 cut(s)	748, 1117, 1139, 1161, 1289, 1470, 1503, 1787
MlyI	GAGTC	2 cut(s)	206, 1568
MmeI	TCCRAC	3 cut(s)	946, 1499, 1542
MroXI	GAANNNNTTC	1 cut(s)	1038
MseI	TTAA	2 cut(s)	1164, 1587
MslI	CAYNNNNRTG	4 cut(s)	138, 486, 1280, 1638
MspA1I	CMGCKG	2 cut(s)	1175, 1556
MspI	CCGG	6 cut(s)	295, 430, 514, 1397, 1446, 1793
MspR9I	CCNGG	9 cut(s)	296, 381, 431, 515, 918, 1007, 1385, 1437, 1793
MunI	CAATTG	2 cut(s)	1139, 1503
Mva1269I	GAATGC	2 cut(s)	1200, 1264
MvaI	CCWGG	5 cut(s)	381, 918, 1007, 1385, 1437
MvnI	CGCG	3 cut(s)	414, 723, 1264
MwoI	GCNNNNNNNGC	1 cut(s)	1703
NciI	CCSGG	4 cut(s)	296, 431, 515, 1793
NcoI	CCATGG	1 cut(s)	1720
NlaIII	CATG	6 cut(s)	1279, 1285, 1667, 1715, 1724, 1765
NlaIV	GGNNCC	8 cut(s)	69, 378, 428, 467, 512, 1327, 1377, 1566
NmeAIII	GCCGAG	1 cut(s)	1687
NmuCI	GTSAC	9 cut(s)	140, 152, 167, 198, 245, 407, 419, 450, 907
NspI	RCATGY	2 cut(s)	1667, 1715
NspV	TTCGAA	1 cut(s)	1613
OliI	CACNNNNGTG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	1269
PauI	GCGCGC	1 cut(s)	1262
PciI	ACATGT	1 cut(s)	1663
PctI	GAATGC	2 cut(s)	1200, 1264
PdmI	GAANNNNTTC	1 cut(s)	1038
PfeI	GAWTC	1 cut(s)	880
PflMI	CCANNNNNTGG	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	1791
PinAI	ACCGGT	1 cut(s)	1396
PkrI	GCNGC	3 cut(s)	119, 1393, 1696
Ple19I	CGATCG	1 cut(s)	816
PleI	GAGTC	2 cut(s)	205, 1567
PmaCI	CACGTG	1 cut(s)	203
PmlI	CACGTG	1 cut(s)	203
PpsI	GAGTC	2 cut(s)	205, 1567
Ppu21I	YACGTR	1 cut(s)	203
PscI	ACATGT	1 cut(s)	1663
Psp6I	CCWGG	5 cut(s)	379, 916, 1005, 1383, 1435
PspCI	CACGTG	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	5 cut(s)	379, 916, 1005, 1383, 1435
PspN4I	GGNNCC	8 cut(s)	69, 378, 428, 467, 512, 1327, 1377, 1566
PspPI	GGNCC	8 cut(s)	427, 718, 742, 914, 932, 1025, 1294, 1325
PsrI	GAACNNNNNNTAC	2 cut(s)	1023, 1055
PstNI	CAGNNNCTG	2 cut(s)	614, 872
PsuI	RGATCY	3 cut(s)	236, 376, 1201
PteI	GCGCGC	1 cut(s)	1262
PvuI	CGATCG	1 cut(s)	816
PvuII	CAGCTG	2 cut(s)	1175, 1556
RgaI	GCGATCGC	1 cut(s)	816
RsaI	GTAC	4 cut(s)	729, 804, 1624, 1670
RsaNI	GTAC	4 cut(s)	728, 803, 1623, 1669
RseI	CAYNNNNRTG	4 cut(s)	138, 486, 1280, 1638
SaqAI	TTAA	2 cut(s)	1164, 1587
SatI	GCNGC	3 cut(s)	118, 1392, 1695
Sau96I	GGNCC	8 cut(s)	427, 718, 742, 914, 932, 1025, 1294, 1325
SchI	GAGTC	2 cut(s)	206, 1568
ScrFI	CCNGG	9 cut(s)	296, 381, 431, 515, 918, 1007, 1385, 1437, 1793
SduI	GDGCHC	1 cut(s)	1708
SexAI	ACCWGGT	1 cut(s)	916
SfaAI	GCGATCGC	1 cut(s)	816
SfaNI	GCATC	3 cut(s)	490, 781, 1099
SfcI	CTRYAG	2 cut(s)	1029, 1494
Sfr274I	CTCGAG	1 cut(s)	1269
SfuI	TTCGAA	1 cut(s)	1613
SgfI	GCGATCGC	1 cut(s)	816
SgrAI	CRCCGGYG	1 cut(s)	1396
SinI	GGWCC	7 cut(s)	427, 718, 742, 914, 1025, 1294, 1325
SlaI	CTCGAG	1 cut(s)	1269
SmiMI	CAYNNNNRTG	4 cut(s)	138, 486, 1280, 1638
SmlI	CTYRAG	2 cut(s)	703, 1269
SmoI	CTYRAG	2 cut(s)	703, 1269
Sse9I	AATT	8 cut(s)	748, 1117, 1139, 1161, 1289, 1470, 1503, 1787
SsiI	CCGC	9 cut(s)	250, 373, 412, 448, 562, 721, 745, 1003, 1242
SspMI	CTAG	3 cut(s)	884, 951, 1113
StyD4I	CCNGG	9 cut(s)	294, 379, 429, 513, 916, 1005, 1383, 1435, 1791
StyI	CCWWGG	1 cut(s)	1720
TaaI	ACNGT	6 cut(s)	37, 258, 646, 1298, 1530, 1622
TaiI	ACGT	8 cut(s)	169, 205, 211, 409, 457, 733, 760, 1102
TaqI	TCGA	7 cut(s)	220, 457, 484, 1156, 1270, 1613, 1749
TasI	AATT	8 cut(s)	748, 1117, 1139, 1161, 1289, 1470, 1503, 1787
TatI	WGTACW	1 cut(s)	1668
TfiI	GAWTC	1 cut(s)	880
Tru1I	TTAA	2 cut(s)	1164, 1587
Tru9I	TTAA	2 cut(s)	1164, 1587
TscAI	CASTG	2 cut(s)	855, 916
TseFI	GTSAC	9 cut(s)	140, 152, 167, 198, 245, 407, 419, 450, 907
TseI	GCWGC	3 cut(s)	117, 1391, 1694
Tsp45I	GTSAC	9 cut(s)	140, 152, 167, 198, 245, 407, 419, 450, 907
TspDTI	ATGAA	5 cut(s)	513, 693, 1071, 1251, 1750
TspRI	CASTG	2 cut(s)	855, 916
Van91I	CCANNNNNTGG	1 cut(s)	941
VpaK11BI	GGWCC	7 cut(s)	427, 718, 742, 914, 1025, 1294, 1325
XapI	RAATTY	3 cut(s)	1117, 1470, 1787
XceI	RCATGY	2 cut(s)	1667, 1715
XhoI	CTCGAG	1 cut(s)	1269
XmiI	GTMKAC	1 cut(s)	1497
XmnI	GAANNNNTTC	1 cut(s)	1038
XspI	CTAG	3 cut(s)	884, 951, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.