Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007651

Physical Location & Seq

Genomic Coordinates Forward (+)

29482351 .. 29491938

Gene Structure 9588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00189690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGGATTTCGATGAGTATGACTATTTAGAGAAAACAGTTGAAAATCCTGAACCTCCGACATCAAAGGACAATGCAAATGGTGGGGAGGAAACTTTGAAGTCTGGAGAAAAAGGCCGCAGCCGAAGTTCAAAGCATAAGAGTGATGATAAAGATCATGACGGGGAGCGTCGCTCAAAGCGTTCAAAATCTGGAGATGAGTTGCATGACCATGATCGGCAAAGAGAGAGGGGATCTTCTCGCCACCGTTCACAGTCCAGAGATCGAGAAAGGGACCGTCACAGGAGTAGTCGGGAACACAGAGATAGGGAGGATAGAGAAAAGGAGGAAAGAAATGGCAAGGAGAGAGATAGGAACAGGGACAGAGAACAGGATCGTGATCGAGACAGGGATAGGAGAGAGCGTGACCGCGATACTGACAGGGACAGGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGCGGTCACGTCGAAGCAGGAGTCATTCAGAAAGGCATAGAAGTGATCGGGATGAAAGAGAGAAAAGCCGTGACATAGAGCATAAAGAACGGGAGAAGGAGAAAGATCTACGGGAGCGGGAGAAAGAAAGCAGGCATTTTGGTGTCAATATGGCAATTTCAGAGAAAGGTACAGCTCGGTCATGGGTCTTAAATGTTTCTTCTAAACTTCCAGGCTTCTATTTAGAAGCTTGCAATGCAAGAGTGAGGGTTCATATTGGAGATTTTGACCGCGGTGAAATGCTGGTTATAGATGACGTCTGCAATCCTTGGAAGTTGATTTTAGTGATCACTGGATCTAAAGGGACTTATGTGGTTTTCCTTGTAAGCATAGAATTATGGTGCATGGGTTCAGCCTTTATTCATTCTACAGAAAGATTAAGATATAAAGAAAAAAAGGAAGAAGTAACAGAACCAGAGGCTGATCCTGAAAGAGATCAGAGGACAGTATTTGCTTATCAGATTTGTCTGAAGGCAGACGAAAGAGATGTATATGATTTCTTCTCACGAGCCGGCAAGGTCCGCGATGTACGTCTCATTATGGATCGTAACTCAAGACGGTCCAAGGGAGTTGGGTATATCGAGTTCTATGATGCGATGTCAGTACCTATGGCTATTGCACTCTCTGGTCAACCTCTTCGAGGTCAACCAGTGATGGTGAAGCCATCAGAGGCAGAGAAGAATCTGGTTCAGTCAACTTCTGTGGTTACTGGAGCCGGTGGGATGATAGGTCCATATTCTGGTGGAGCTAGACGGCTGTATGTTGGCAATCTACACACCAACATAAAAGAAGATGATCTACGCCAGGTTTTTGGAGCATTTGGTGCTGTAGAACTGGTTCAGTTGCCTCTTGACGAAACTAACAACTGCAAAGGTTTTGGATTTGTTCAGGGCAACGGCTTAGAAATCTTGATGAGGATGGATGTTTCTATTTTTTTTCAACGGCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGCCAATTGGAGATTGCTGGTCGAGTAATTAAGGTATCAGCTGTGACTGACCAGGCTGGAATGCAAGATGTTGGAGCAAATGCTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGGAAGTGCACAATACTCTTCAGGCAGTGCAGACATCAGCACTGCAAATCCAAAGGGTAGTGTCATTGAATGCCCGGTCACGAGCAATTCTCATGCAGAAACTGGATCGTAGTGGCAGTGGATCAAGTCTTGCTGTCAATAGCACTGGTCTACCAGTGGCACTTCCAGCAGCACCAATCCTGGGAGGTGCACCAGGAGTTTCTTCTCTTGGTACTCCCATGGCCTCTGTTCCTGGTCTTGCTGGACTTGGTGTTCCGGGTCTTCAAATTCCTACAGCTACTGTTCCTTCTGTAGATACAATTGGTGTTCCAAGCGAATGCTTACTGTTGACAAATATGTTTGATCCTAAAGAAATTGAGGCTGAACCAGATATTGACGTGGACATTAAAGAAGATGTTCAGGAGGAATGTTCAAAATACGGGAAGCTGAAACATATTTTTGTTGATAAGAATACCGCTGGTTTTGTGTACTTGAGATTTGAGAACACACAAGCTGCAATAAATGCTCGACAAGTTCTCCATGGAAGATGGTTTGCTGGGAAGATGATCACAGCGACTTTCATGTTGCCTCAGACCTATGAGACTAAATTCCCTGAGAGCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

730

Amino Acids

82.57

Weight (kDa)

6.35

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	324 - 383	2.2e-09	RNA recognition motif
RRM_1	PF00076	418 - 462	1.3e-11	RNA recognition motif
RBM39linker	PF15519	550 - 647	4.5e-11	linker between RRM2 and RRM3 domains in RBM39 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16940 AT2G16940 AT2G16940 AT2G16940 AT2G16940
fragaria_vesca	FvH4_2g15540
malus_domestica	MD05G1123800.v1.1 MD10G1126500.v1.1
prunus_persica	Prupe.8G167600_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1
pyrus_communis	pycom05g11800
rosa_chinensis	RchiOBHm_Chr6g0278711
rosa_laevigata	RLG00000013199
rosa_multiflora	Rmu_sc0000531.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189690 Rroxscaffold_7G00189950
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227200 Rh6BG232600 Rh6CG234800 Rh6DG226400
rosa_wichuraiana	Rw6G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccBSI	CCGCTC	2 cut(s)	460, 574
AccI	GTMKAC	1 cut(s)	1738
AccII	CGCG	3 cut(s)	408, 729, 1020
AciI	CCGC	8 cut(s)	115, 406, 460, 574, 727, 729, 1018, 2043
AclWI	GGATC	8 cut(s)	238, 378, 799, 914, 1047, 1701, 1717, 1925
AcoI	YGGCCR	1 cut(s)	1474
AcsI	RAATTY	2 cut(s)	1854, 2174
AcuI	CTGAAG	2 cut(s)	986, 1592
AcyI	GRCGYC	1 cut(s)	753
AfaI	GTAC	5 cut(s)	628, 1026, 1101, 1801, 2057
AfiI	CCNNNNNNNGG	3 cut(s)	1136, 1235, 1769
AjiI	CACGTC	2 cut(s)	467, 1966
AjnI	CCWGG	6 cut(s)	667, 1299, 1524, 1767, 1780, 1819
AjuI	GAANNNNNNNTTGG	2 cut(s)	1463, 1495
AloI	GAACNNNNNNTCC	2 cut(s)	1824, 1856
AluBI	AGCT	7 cut(s)	632, 686, 1244, 1514, 1865, 2014, 2081
AluI	AGCT	7 cut(s)	632, 686, 1244, 1514, 1865, 2014, 2081
Alw21I	GWGCWC	2 cut(s)	1599, 1780
Alw26I	GTCTC	3 cut(s)	375, 1034, 2162
Alw44I	GTGCAC	2 cut(s)	1595, 1776
AlwI	GGATC	8 cut(s)	238, 378, 799, 914, 1047, 1701, 1717, 1925
AlwNI	CAGNNNCTG	3 cut(s)	917, 1690, 1868
AoxI	GGCC	3 cut(s)	112, 1474, 1809
ApaLI	GTGCAC	2 cut(s)	1595, 1776
ApeKI	GCWGC	3 cut(s)	117, 1757, 2081
ApoI	RAATTY	2 cut(s)	1854, 2174
ArsI	GACNNNNNNTTYG	2 cut(s)	463, 495
Asp700I	GAANNNNTTC	2 cut(s)	1332, 1983
AspS9I	GGNCC	4 cut(s)	271, 1015, 1056, 1226
AsuC2I	CCSGG	2 cut(s)	1663, 1845
AsuHPI	GGTGA	3 cut(s)	743, 1165, 1571
AvaII	GGWCC	4 cut(s)	271, 1015, 1056, 1226
BaeGI	GKGCMC	2 cut(s)	1599, 1780
BalI	TGGCCA	1 cut(s)	1476
BarI	GAAGNNNNNNTAC	2 cut(s)	1278, 1310
BauI	CACGAG	2 cut(s)	1002, 1668
BbsI	GAAGAC	1 cut(s)	1841
Bbv12I	GWGCWC	2 cut(s)	1599, 1780
BbvI	GCAGC	3 cut(s)	129, 1769, 2068
BccI	CCATC	4 cut(s)	1144, 1168, 1408, 2109
BceAI	ACGGC	4 cut(s)	510, 1265, 1408, 1454
BciT130I	CCWGG	6 cut(s)	669, 1301, 1526, 1769, 1782, 1821
BclI	TGATCA	2 cut(s)	783, 2133
BcnI	CCSGG	2 cut(s)	1663, 1845
BcoDI	GTCTC	3 cut(s)	375, 1034, 2162
BfaI	CTAG	2 cut(s)	1245, 1452
BfmI	CTRYAG	4 cut(s)	864, 1323, 1860, 1878
BglII	AGATCT	1 cut(s)	562
BisI	GCNGC	4 cut(s)	115, 118, 1758, 2082
BlsI	GCNGC	4 cut(s)	116, 119, 1759, 2083
Bme1390I	CCNGG	8 cut(s)	669, 1301, 1526, 1663, 1769, 1782, 1821, 1845
Bme18I	GGWCC	4 cut(s)	271, 1015, 1056, 1226
BmgBI	CACGTC	2 cut(s)	467, 1966
BmgT120I	GGNCC	4 cut(s)	271, 1015, 1056, 1226
BmiI	GGNNCC	2 cut(s)	272, 1210
BmrFI	CCNGG	8 cut(s)	669, 1301, 1526, 1663, 1769, 1782, 1821, 1845
BmsI	GCATC	2 cut(s)	1078, 1438
BpiI	GAAGAC	1 cut(s)	1841
BplI	GAGNNNNNCTC	4 cut(s)	155, 187, 1662, 1694
BpmI	CTGGAG	3 cut(s)	123, 210, 1227
BpuEI	CTTGAG	2 cut(s)	1033, 2080
BpuMI	CCSGG	2 cut(s)	1663, 1845
BsaBI	GATNNNNATC	2 cut(s)	150, 375
BsaHI	GRCGYC	1 cut(s)	753
BsaJI	CCNNGG	6 cut(s)	727, 764, 1059, 1768, 1806, 2107
BsaXI	ACNNNNNCTCC	4 cut(s)	385, 415, 2088, 2118
Bsc4I	CCNNNNNNNGG	3 cut(s)	1136, 1235, 1769
Bse118I	RCCGGY	3 cut(s)	1007, 1211, 2187
Bse1I	ACTGG	7 cut(s)	793, 1145, 1210, 1335, 1695, 1738, 1742
Bse3DI	GCAATG	1 cut(s)	697
Bse8I	GATNNNNATC	2 cut(s)	150, 375
BseBI	CCWGG	6 cut(s)	669, 1301, 1526, 1769, 1782, 1821
BseDI	CCNNGG	6 cut(s)	727, 764, 1059, 1768, 1806, 2107
BseGI	GGATG	4 cut(s)	514, 1224, 1419, 1423
BseJI	GATNNNNATC	2 cut(s)	150, 375
BseLI	CCNNNNNNNGG	3 cut(s)	1136, 1235, 1769
BseMI	GCAATG	1 cut(s)	697
BseMII	CTCAG	3 cut(s)	1454, 2171, 2172
BseNI	ACTGG	7 cut(s)	793, 1145, 1210, 1335, 1695, 1738, 1742
BseSI	GKGCMC	2 cut(s)	1599, 1780
BseXI	GCAGC	3 cut(s)	129, 1769, 2068
BseYI	CCCAGC	1 cut(s)	2123
BsgI	GTGCAG	1 cut(s)	1637
Bsh1236I	CGCG	3 cut(s)	408, 729, 1020
BshFI	GGCC	3 cut(s)	114, 1476, 1811
BsiHKAI	GWGCWC	2 cut(s)	1599, 1780
BsiSI	CCGG	5 cut(s)	1008, 1212, 1663, 1844, 2188
BslFI	GGGAC	4 cut(s)	284, 371, 434, 814
BslI	CCNNNNNNNGG	3 cut(s)	1136, 1235, 1769
BsmAI	GTCTC	3 cut(s)	375, 1034, 2162
BsmBI	CGTCTC	1 cut(s)	1034
BsmFI	GGGAC	4 cut(s)	284, 371, 434, 814
BsmI	GAATGC	3 cut(s)	1539, 1663, 1910
BsnI	GGCC	3 cut(s)	114, 1476, 1811
Bsp1286I	GDGCHC	2 cut(s)	1599, 1780
Bsp19I	CCATGG	2 cut(s)	1806, 2107
BspACI	CCGC	8 cut(s)	115, 406, 460, 574, 727, 729, 1018, 2043
BspANI	GGCC	3 cut(s)	114, 1476, 1811
BspCNI	CTCAG	3 cut(s)	1455, 2170, 2173
BspFNI	CGCG	3 cut(s)	408, 729, 1020
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	272, 1210
BspPI	GGATC	8 cut(s)	238, 378, 799, 914, 1047, 1701, 1717, 1925
BsrBI	CCGCTC	2 cut(s)	460, 574
BsrDI	GCAATG	1 cut(s)	697
BsrFI	RCCGGY	3 cut(s)	1007, 1211, 2187
BsrI	ACTGG	7 cut(s)	793, 1145, 1210, 1335, 1695, 1738, 1742
BssAI	RCCGGY	3 cut(s)	1007, 1211, 2187
BssECI	CCNNGG	6 cut(s)	727, 764, 1059, 1768, 1806, 2107
BssNI	GRCGYC	1 cut(s)	753
BssSI	CACGAG	2 cut(s)	1002, 1668
BssT1I	CCWWGG	4 cut(s)	764, 1059, 1806, 2107
Bst2BI	CACGAG	2 cut(s)	1002, 1668
Bst2UI	CCWGG	6 cut(s)	669, 1301, 1526, 1769, 1782, 1821
Bst4CI	ACNGT	8 cut(s)	37, 245, 252, 275, 943, 1056, 1870, 1914
Bst6I	CTCTTC	2 cut(s)	1137, 1611
BstACI	GRCGYC	1 cut(s)	753
BstAPI	GCANNNNNTGC	2 cut(s)	1319, 2090
BstC8I	GCNNGC	3 cut(s)	590, 688, 1009
BstDEI	CTNAG	4 cut(s)	1396, 1463, 2157, 2181
BstDSI	CCRYGG	3 cut(s)	727, 1806, 2107
BstENI	CCTNNNNNAGG	1 cut(s)	1134
BstF5I	GGATG	4 cut(s)	514, 1224, 1419, 1423
BstFNI	CGCG	3 cut(s)	408, 729, 1020
BstMAI	GTCTC	3 cut(s)	375, 1034, 2162
BstMWI	GCNNNNNNNGC	6 cut(s)	692, 1017, 1319, 1457, 1754, 2090
BstNI	CCWGG	6 cut(s)	669, 1301, 1526, 1769, 1782, 1821
BstSCI	CCNGG	8 cut(s)	667, 1299, 1524, 1661, 1767, 1780, 1819, 1843
BstSFI	CTRYAG	4 cut(s)	864, 1323, 1860, 1878
BstSLI	GKGCMC	2 cut(s)	1599, 1780
BstUI	CGCG	3 cut(s)	408, 729, 1020
BstV1I	GCAGC	3 cut(s)	129, 1769, 2068
BstV2I	GAAGAC	1 cut(s)	1841
BstX2I	RGATCY	3 cut(s)	230, 562, 791
BstXI	CCANNNNNNTGG	1 cut(s)	1307
BstYI	RGATCY	3 cut(s)	230, 562, 791
BsuRI	GGCC	3 cut(s)	114, 1476, 1811
BtgI	CCRYGG	3 cut(s)	727, 1806, 2107
BtgZI	GCGATG	2 cut(s)	1035, 1106
BtrI	CACGTC	2 cut(s)	467, 1966
BtsCI	GGATG	4 cut(s)	514, 1224, 1419, 1423
BtsI	GCAGTG	3 cut(s)	1620, 1628, 1711
BtsIMutI	CAGTG	8 cut(s)	786, 1152, 1460, 1620, 1628, 1711, 1731, 1749
Cac8I	GCNNGC	3 cut(s)	590, 688, 1009
CaiI	CAGNNNCTG	3 cut(s)	917, 1690, 1868
CciI	TCATGA	1 cut(s)	154
Cfr10I	RCCGGY	3 cut(s)	1007, 1211, 2187
Cfr13I	GGNCC	4 cut(s)	271, 1015, 1056, 1226
Cfr42I	CCGCGG	1 cut(s)	730
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	5 cut(s)	627, 1025, 1100, 1800, 2056
CspCI	CAANNNNNGTGG	2 cut(s)	1179, 1214
CviAII	CATG	9 cut(s)	155, 203, 209, 639, 841, 1681, 1807, 2108, 2149
CviQI	GTAC	5 cut(s)	627, 1025, 1100, 1800, 2056
DdeI	CTNAG	4 cut(s)	1396, 1463, 2157, 2181
EaeI	YGGCCR	1 cut(s)	1474
Eam1104I	CTCTTC	2 cut(s)	1137, 1611
EarI	CTCTTC	2 cut(s)	1137, 1611
Eco130I	CCWWGG	4 cut(s)	764, 1059, 1806, 2107
Eco47I	GGWCC	4 cut(s)	271, 1015, 1056, 1226
Eco57I	CTGAAG	2 cut(s)	986, 1592
EcoNI	CCTNNNNNAGG	1 cut(s)	1134
EcoRII	CCWGG	6 cut(s)	667, 1299, 1524, 1767, 1780, 1819
EcoT14I	CCWWGG	4 cut(s)	764, 1059, 1806, 2107
ErhI	CCWWGG	4 cut(s)	764, 1059, 1806, 2107
Esp3I	CGTCTC	1 cut(s)	1034
FaeI	CATG	9 cut(s)	158, 206, 212, 642, 844, 1684, 1810, 2111, 2152
FaqI	GGGAC	4 cut(s)	284, 371, 434, 814
FatI	CATG	9 cut(s)	154, 202, 208, 638, 840, 1680, 1806, 2107, 2148
FauI	CCCGC	1 cut(s)	567
FbaI	TGATCA	2 cut(s)	783, 2133
FblI	GTMKAC	1 cut(s)	1738
Fnu4HI	GCNGC	4 cut(s)	115, 118, 1758, 2082
FokI	GGATG	4 cut(s)	521, 1231, 1426, 1430
Fsp4HI	GCNGC	4 cut(s)	115, 118, 1758, 2082
FspBI	CTAG	2 cut(s)	1245, 1452
GluI	GCNGC	4 cut(s)	115, 118, 1758, 2082
GsaI	CCCAGC	1 cut(s)	2127
GsuI	CTGGAG	3 cut(s)	123, 210, 1227
HaeIII	GGCC	3 cut(s)	114, 1476, 1811
HapII	CCGG	5 cut(s)	1008, 1212, 1663, 1844, 2188
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	9 cut(s)	158, 206, 212, 642, 844, 1684, 1810, 2111, 2152
HincII	GTYRAC	4 cut(s)	1127, 1142, 1191, 1917
HindII	GTYRAC	4 cut(s)	1127, 1142, 1191, 1917
HindIII	AAGCTT	1 cut(s)	684
HinfI	GANTC	2 cut(s)	478, 1177
HpaII	CCGG	5 cut(s)	1008, 1212, 1663, 1844, 2188
HphI	GGTGA	3 cut(s)	743, 1165, 1571
Hpy188I	TCNGA	8 cut(s)	57, 487, 619, 936, 957, 966, 1165, 2160
Hpy99I	CGWCG	2 cut(s)	171, 471
HpyAV	CCTTC	9 cut(s)	424, 430, 436, 442, 448, 547, 961, 1571, 1884
HpyCH4III	ACNGT	8 cut(s)	37, 245, 252, 275, 943, 1056, 1870, 1914
HpyCH4IV	ACGT	4 cut(s)	466, 753, 1027, 1965
HpyF10VI	GCNNNNNNNGC	6 cut(s)	692, 1017, 1319, 1457, 1754, 2090
HpyF3I	CTNAG	4 cut(s)	1396, 1463, 2157, 2181
HpySE526I	ACGT	4 cut(s)	466, 753, 1027, 1965
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	9 cut(s)	158, 206, 212, 642, 844, 1684, 1810, 2111, 2152
KroI	GCCGGC	1 cut(s)	1007
KroNI	GCCGGC	1 cut(s)	1009
Ksp22I	TGATCA	2 cut(s)	783, 2133
KspI	CCGCGG	1 cut(s)	730
LmnI	GCTCC	7 cut(s)	163, 457, 571, 1208, 1241, 1310, 1547
Lsp1109I	GCAGC	3 cut(s)	129, 1769, 2068
LweI	GCATC	2 cut(s)	1078, 1438
MaeI	CTAG	2 cut(s)	1245, 1452
MaeII	ACGT	4 cut(s)	466, 753, 1027, 1965
MaeIII	GTNAC	9 cut(s)	275, 401, 462, 527, 901, 1043, 1201, 1516, 1665
MbiI	CCGCTC	2 cut(s)	460, 574
MfeI	CAATTG	2 cut(s)	1478, 1887
MflI	RGATCY	3 cut(s)	230, 562, 791
MhlI	GDGCHC	2 cut(s)	1599, 1780
MlsI	TGGCCA	1 cut(s)	1476
MluCI	AATT	9 cut(s)	612, 830, 1478, 1500, 1674, 1854, 1887, 1941, 2174
MluNI	TGGCCA	1 cut(s)	1476
MlyI	GAGTC	1 cut(s)	487
MmeI	TCCRAC	2 cut(s)	80, 1525
Mox20I	TGGCCA	1 cut(s)	1476
MroNI	GCCGGC	1 cut(s)	1007
MroXI	GAANNNNTTC	2 cut(s)	1332, 1983
MscI	TGGCCA	1 cut(s)	1476
MseI	TTAA	4 cut(s)	647, 875, 1503, 1974
MslI	CAYNNNNRTG	4 cut(s)	138, 207, 498, 597
Msp20I	TGGCCA	1 cut(s)	1476
MspA1I	CMGCKG	3 cut(s)	729, 1514, 2045
MspI	CCGG	5 cut(s)	1008, 1212, 1663, 1844, 2188
MspR9I	CCNGG	8 cut(s)	669, 1301, 1526, 1663, 1769, 1782, 1821, 1845
MunI	CAATTG	2 cut(s)	1478, 1887
Mva1269I	GAATGC	3 cut(s)	1539, 1663, 1910
MvaI	CCWGG	6 cut(s)	669, 1301, 1526, 1769, 1782, 1821
MvnI	CGCG	3 cut(s)	408, 729, 1020
MwoI	GCNNNNNNNGC	6 cut(s)	692, 1017, 1319, 1457, 1754, 2090
NaeI	GCCGGC	1 cut(s)	1009
NciI	CCSGG	2 cut(s)	1663, 1845
NcoI	CCATGG	2 cut(s)	1806, 2107
NgoMIV	GCCGGC	1 cut(s)	1007
NlaIII	CATG	9 cut(s)	158, 206, 212, 642, 844, 1684, 1810, 2111, 2152
NlaIV	GGNNCC	2 cut(s)	272, 1210
NmuCI	GTSAC	6 cut(s)	275, 401, 462, 527, 1516, 1665
PagI	TCATGA	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	175
PctI	GAATGC	3 cut(s)	1539, 1663, 1910
PdiI	GCCGGC	1 cut(s)	1009
PdmI	GAANNNNTTC	2 cut(s)	1332, 1983
PfeI	GAWTC	1 cut(s)	1177
PflMI	CCANNNNNTGG	1 cut(s)	1235
PkrI	GCNGC	4 cut(s)	116, 119, 1759, 2083
PleI	GAGTC	1 cut(s)	486
PpsI	GAGTC	1 cut(s)	486
Psp6I	CCWGG	6 cut(s)	667, 1299, 1524, 1767, 1780, 1819
PspFI	CCCAGC	1 cut(s)	2123
PspGI	CCWGG	6 cut(s)	667, 1299, 1524, 1767, 1780, 1819
PspN4I	GGNNCC	2 cut(s)	272, 1210
PspPI	GGNCC	4 cut(s)	271, 1015, 1056, 1226
PsrI	GAACNNNNNNTAC	4 cut(s)	1064, 1096, 1317, 1349
PstNI	CAGNNNCTG	3 cut(s)	917, 1690, 1868
PsuI	RGATCY	3 cut(s)	230, 562, 791
PvuII	CAGCTG	1 cut(s)	1514
RsaI	GTAC	5 cut(s)	628, 1026, 1101, 1801, 2057
RsaNI	GTAC	5 cut(s)	627, 1025, 1100, 1800, 2056
RseI	CAYNNNNRTG	4 cut(s)	138, 207, 498, 597
SacII	CCGCGG	1 cut(s)	730
SaqAI	TTAA	4 cut(s)	647, 875, 1503, 1974
SatI	GCNGC	4 cut(s)	115, 118, 1758, 2082
Sau96I	GGNCC	4 cut(s)	271, 1015, 1056, 1226
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	8 cut(s)	669, 1301, 1526, 1663, 1769, 1782, 1821, 1845
SduI	GDGCHC	2 cut(s)	1599, 1780
SfaNI	GCATC	2 cut(s)	1078, 1438
SfcI	CTRYAG	4 cut(s)	864, 1323, 1860, 1878
Sfr303I	CCGCGG	1 cut(s)	730
SgrBI	CCGCGG	1 cut(s)	730
SinI	GGWCC	4 cut(s)	271, 1015, 1056, 1226
SmiMI	CAYNNNNRTG	4 cut(s)	138, 207, 498, 597
SmlI	CTYRAG	2 cut(s)	1048, 2059
SmoI	CTYRAG	2 cut(s)	1048, 2059
Sse9I	AATT	9 cut(s)	612, 830, 1478, 1500, 1674, 1854, 1887, 1941, 2174
SsiI	CCGC	8 cut(s)	115, 406, 460, 574, 727, 729, 1018, 2043
SspMI	CTAG	2 cut(s)	1245, 1452
StyD4I	CCNGG	8 cut(s)	667, 1299, 1524, 1661, 1767, 1780, 1819, 1843
StyI	CCWWGG	4 cut(s)	764, 1059, 1806, 2107
TaaI	ACNGT	8 cut(s)	37, 245, 252, 275, 943, 1056, 1870, 1914
TaiI	ACGT	4 cut(s)	469, 756, 1030, 1968
TaqI	TCGA	8 cut(s)	9, 262, 379, 469, 1077, 1135, 1495, 2095
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	9 cut(s)	612, 830, 1478, 1500, 1674, 1854, 1887, 1941, 2174
TatI	WGTACW	1 cut(s)	2055
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	1177
Tru1I	TTAA	4 cut(s)	647, 875, 1503, 1974
Tru9I	TTAA	4 cut(s)	647, 875, 1503, 1974
TscAI	CASTG	8 cut(s)	793, 1152, 1467, 1620, 1635, 1711, 1738, 1749
TseFI	GTSAC	6 cut(s)	275, 401, 462, 527, 1516, 1665
TseI	GCWGC	3 cut(s)	117, 1757, 2081
Tsp45I	GTSAC	6 cut(s)	275, 401, 462, 527, 1516, 1665
TspDTI	ATGAA	5 cut(s)	525, 698, 848, 1590, 2137
TspRI	CASTG	8 cut(s)	793, 1152, 1467, 1620, 1635, 1711, 1738, 1749
Van91I	CCANNNNNTGG	1 cut(s)	1235
VneI	GTGCAC	2 cut(s)	1595, 1776
VpaK11BI	GGWCC	4 cut(s)	271, 1015, 1056, 1226
XagI	CCTNNNNNAGG	1 cut(s)	1134
XapI	RAATTY	2 cut(s)	1854, 2174
XmiI	GTMKAC	1 cut(s)	1738
XmnI	GAANNNNTTC	2 cut(s)	1332, 1983
XspI	CTAG	2 cut(s)	1245, 1452
ZraI	GACGTC	1 cut(s)	754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.