Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0007651

Physical Location & Seq

Genomic Coordinates Reverse (-)

17315000 .. 17319552

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G167600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATTTGTCTGAAGGCAGATGAAAGAGATGTATACGAGTTCTTCTCAAGGGCTGGCAAGGTCCGTGATGTACGCCTCATTATGGATCGCAATTCAAGACGTTCTAAGGGAGTTGGGTATATTGAGTTTTATGATGCAATGTCGGTACCAATGGCGATTGCACTTTCTGGTCAGCCTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAGGCTGAGAAGAATCTGGTTCAATCAACATCTGTGGTTAGCGGACCAGGTGGGATGATAGGCCCATATTCTGGCGGAGCTAGAAAGCTGTATGTGGGAAATCTCCATACCAATATAAAAGAAGACGATCTCCTCCAGATGACATTTGGTCCTGTAGAACTGGTTCAGTTAGCTGTTGACGAAACTAACAACTGCAAAGGTTTTGGATTTGTGCAGTTCTCACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGAAAATTGGAGATTGCAGGTCGACTAATTAAGGTGTCAGCTGTTACAGACCAAGCTGGAATGCAAGGTCTTGGAGCAAATGCTGGTGATTTTGATGACGATGAAGGTGGTGGCTTGTCATTGAATGCCCGCTCTCGGGCAATTCTCATGCAGAAATTGGATCGCAGTGGCTCTGGATCAGGTATTGCTGGTCCCCTAGGCACTCCGGCTGTCAATAGCACCGGTGTTTCTTTACCAATGGCACTACCGACGGCACCACTCCTGGGAGCTGCAGCAGTGATTTCTCCTCTTGTTCCTCCCATCACCGCTGTTCCTGGTATCGCTGGACTTGGTGTTGCTGGTCTTCAAATTCCTACTTCTGCTCTTCCTTCTATAGATACAATTGGTGTTCCAAGCGAATGTTTACTGTTGAAAAATATGTTTAATCCAGCAGTTGAGACGGAACCAAACTTTGACTTGGACATTAAAGAAGATGTTCAGGAGGAGTGTTCAAAATACAGGAATTTGAGGCATATCTTTGTAGACAAGAATACCGCTGGTCATGTGTACTTGCGATTCGAGAACACACAAGCTGCGATAAATGCTCGGCATGTTCTCCATGGAATAACCCAGAGTTTATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RBM39linker RRM_1

Protein Analysis

363

Amino Acids

38.45

Weight (kDa)

5.64

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16940 AT2G16940 AT2G16940 AT2G16940 AT2G16940
fragaria_vesca	FvH4_2g15540
malus_domestica	MD05G1123800.v1.1 MD10G1126500.v1.1
prunus_persica	Prupe.8G167600_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1 Prupe.8G167800_v2.0.a1
pyrus_communis	pycom05g11800
rosa_chinensis	RchiOBHm_Chr6g0278711
rosa_laevigata	RLG00000013199
rosa_multiflora	Rmu_sc0000531.1_g000006
rosa_roxburghii	Rroxscaffold_7G00189690 Rroxscaffold_7G00189950
rosa_rugosa	Rorug06G0118400
rosa_samantha	Rh6AG227200 Rh6BG232600 Rh6CG234800 Rh6DG226400
rosa_wichuraiana	Rw6G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
Acc65I	GGTACC	1 cut(s)	142
AccB1I	GGYRCC	2 cut(s)	142, 718
AccB7I	CCANNNNNTGG	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	597
AccI	GTMKAC	3 cut(s)	30, 487, 987
AciI	CCGC	5 cut(s)	249, 282, 595, 771, 999
AclWI	GGATC	3 cut(s)	90, 633, 649
AcsI	RAATTY	2 cut(s)	813, 967
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	3 cut(s)	69, 144, 1013
AfiI	CCNNNNNNNGG	6 cut(s)	79, 179, 278, 600, 601, 728
AgeI	ACCGGT	1 cut(s)	686
AgsI	TTSAA	8 cut(s)	93, 230, 437, 463, 589, 812, 877, 957
AhdI	GACNNNNNGTC	1 cut(s)	354
AjiI	CACGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	253, 726, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	7 cut(s)	287, 295, 380, 506, 521, 734, 1037
AluI	AGCT	7 cut(s)	287, 295, 380, 506, 521, 734, 1037
Alw26I	GTCTC	1 cut(s)	896
AlwI	GGATC	3 cut(s)	90, 633, 649
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	600
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	3 cut(s)	734, 737, 1037
ApoI	RAATTY	2 cut(s)	813, 967
AsiGI	ACCGGT	1 cut(s)	686
Asp700I	GAANNNNTTC	2 cut(s)	369, 939
Asp718I	GGTACC	1 cut(s)	142
AspA2I	CCTAGG	1 cut(s)	661
AspS9I	GGNCC	5 cut(s)	58, 251, 269, 356, 656
AsuHPI	GGTGA	3 cut(s)	208, 563, 760
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	4 cut(s)	58, 251, 356, 656
AvrII	CCTAGG	1 cut(s)	661
BanI	GGYRCC	2 cut(s)	142, 718
BbsI	GAAGAC	2 cut(s)	336, 800
BbvI	GCAGC	3 cut(s)	721, 749, 1024
BccI	CCATC	3 cut(s)	187, 211, 773
BceAI	ACGGC	1 cut(s)	732
BciT130I	CCWGG	3 cut(s)	255, 728, 780
BcoDI	GTCTC	1 cut(s)	896
BfaI	CTAG	3 cut(s)	288, 444, 662
BfmI	CTRYAG	3 cut(s)	360, 735, 837
BfuAI	ACCTGC	1 cut(s)	473
BisI	GCNGC	3 cut(s)	735, 738, 1038
BlnI	CCTAGG	1 cut(s)	661
BlsI	GCNGC	3 cut(s)	736, 739, 1039
Bme1390I	CCNGG	3 cut(s)	255, 728, 780
Bme18I	GGWCC	4 cut(s)	58, 251, 356, 656
BmeRI	GACNNNNNGTC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	600
BmgBI	CACGTC	1 cut(s)	431
BmgT120I	GGNCC	5 cut(s)	58, 251, 269, 356, 656
BmiI	GGNNCC	4 cut(s)	144, 658, 720, 909
BmrFI	CCNGG	3 cut(s)	255, 728, 780
BmsI	GCATC	2 cut(s)	121, 430
BpiI	GAAGAC	2 cut(s)	336, 800
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	661, 727, 1063
BsaWI	WCCGGW	1 cut(s)	686
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 179, 278, 600, 601, 728
Bse118I	RCCGGY	1 cut(s)	686
Bse1I	ACTGG	2 cut(s)	188, 372
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	255, 728, 780
BseDI	CCNNGG	3 cut(s)	661, 727, 1063
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	6 cut(s)	79, 179, 278, 600, 601, 728
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	2 cut(s)	204, 446
BseNI	ACTGG	2 cut(s)	188, 372
BseRI	GAGGAG	3 cut(s)	329, 741, 962
BseXI	GCAGC	3 cut(s)	721, 749, 1024
BsgI	GTGCAG	1 cut(s)	440
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	2 cut(s)	142, 718
BshTI	ACCGGT	1 cut(s)	686
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	2 cut(s)	671, 687
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	6 cut(s)	79, 179, 278, 600, 601, 728
BsmAI	GTCTC	1 cut(s)	896
BsmBI	CGTCTC	1 cut(s)	896
BsmFI	GGGAC	1 cut(s)	642
BsmI	GAATGC	2 cut(s)	531, 595
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	600
Bsp143I	GATC	4 cut(s)	82, 334, 625, 641
Bsp19I	CCATGG	1 cut(s)	1063
BspACI	CCGC	5 cut(s)	249, 282, 595, 771, 999
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	2 cut(s)	205, 447
BspLI	GGNNCC	4 cut(s)	144, 658, 720, 909
BspMAI	CTGCAG	1 cut(s)	739
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	3 cut(s)	90, 633, 649
BspQI	GCTCTTC	1 cut(s)	834
BspT107I	GGYRCC	2 cut(s)	142, 718
BsrBI	CCGCTC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	188, 372
BssAI	RCCGGY	1 cut(s)	686
BssECI	CCNNGG	3 cut(s)	661, 727, 1063
BssMI	GATC	4 cut(s)	82, 334, 625, 641
BssNAI	GTATAC	1 cut(s)	31
BssT1I	CCWWGG	2 cut(s)	661, 1063
Bst1107I	GTATAC	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	255, 728, 780
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	2 cut(s)	180, 834
BstC8I	GCNNGC	2 cut(s)	52, 595
BstDEI	CTNAG	3 cut(s)	102, 213, 455
BstDSI	CCRYGG	1 cut(s)	1063
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	4 cut(s)	85, 337, 628, 644
BstMAI	GTCTC	1 cut(s)	896
BstMBI	GATC	4 cut(s)	82, 334, 625, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 1046
BstNI	CCWGG	3 cut(s)	255, 728, 780
BstNSI	RCATGY	1 cut(s)	1058
BstSCI	CCNGG	3 cut(s)	253, 726, 778
BstSFI	CTRYAG	3 cut(s)	360, 735, 837
BstV1I	GCAGC	3 cut(s)	721, 749, 1024
BstV2I	GAAGAC	2 cut(s)	336, 800
BstZ17I	GTATAC	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	1063
BtrI	CACGTC	1 cut(s)	431
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	2 cut(s)	637, 747
BtsIMutI	CAGTG	4 cut(s)	195, 452, 637, 747
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	2 cut(s)	52, 595
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	686
Cfr13I	GGNCC	5 cut(s)	58, 251, 269, 356, 656
CsiI	ACCWGGT	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	68, 143, 1012
CspAI	ACCGGT	1 cut(s)	686
CspCI	CAANNNNNGTGG	2 cut(s)	222, 257
CviAII	CATG	4 cut(s)	613, 1007, 1055, 1064
CviQI	GTAC	3 cut(s)	68, 143, 1012
DdeI	CTNAG	3 cut(s)	102, 213, 455
DpnI	GATC	4 cut(s)	84, 336, 627, 643
DpnII	GATC	4 cut(s)	82, 334, 625, 641
DriI	GACNNNNNGTC	1 cut(s)	354
Eam1104I	CTCTTC	2 cut(s)	180, 834
Eam1105I	GACNNNNNGTC	1 cut(s)	354
EarI	CTCTTC	2 cut(s)	180, 834
EciI	GGCGGA	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	661, 1063
Eco47I	GGWCC	4 cut(s)	58, 251, 356, 656
Eco57I	CTGAAG	1 cut(s)	29
Eco88I	CYCGRG	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	253, 726, 778
EcoT14I	CCWWGG	2 cut(s)	661, 1063
ErhI	CCWWGG	2 cut(s)	661, 1063
Esp3I	CGTCTC	1 cut(s)	896
FaeI	CATG	4 cut(s)	616, 1010, 1058, 1067
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	4 cut(s)	612, 1006, 1054, 1063
FauI	CCCGC	1 cut(s)	602
FblI	GTMKAC	3 cut(s)	30, 487, 987
Fnu4HI	GCNGC	3 cut(s)	735, 738, 1038
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	735, 738, 1038
FspBI	CTAG	3 cut(s)	288, 444, 662
GluI	GCNGC	3 cut(s)	735, 738, 1038
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	2 cut(s)	671, 687
Hin1II	CATG	4 cut(s)	616, 1010, 1058, 1067
HincII	GTYRAC	3 cut(s)	185, 385, 488
HindII	GTYRAC	3 cut(s)	185, 385, 488
HinfI	GANTC	2 cut(s)	220, 1020
HpaII	CCGG	2 cut(s)	671, 687
HphI	GGTGA	3 cut(s)	208, 563, 760
Hpy166II	GTNNAC	7 cut(s)	31, 185, 385, 488, 869, 988, 1012
Hpy188I	TCNGA	2 cut(s)	9, 208
Hpy188III	TCNNGA	6 cut(s)	93, 343, 434, 639, 944, 1024
Hpy8I	GTNNAC	7 cut(s)	31, 185, 385, 488, 869, 988, 1012
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	4, 563, 843
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4IV	ACGT	2 cut(s)	97, 430
HpyCH4V	TGCA	9 cut(s)	134, 158, 402, 421, 452, 482, 529, 616, 737
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 1046
HpyF3I	CTNAG	3 cut(s)	102, 213, 455
HpySE526I	ACGT	2 cut(s)	97, 430
Hsp92II	CATG	4 cut(s)	616, 1010, 1058, 1067
KpnI	GGTACC	1 cut(s)	146
Kzo9I	GATC	4 cut(s)	82, 334, 625, 641
LguI	GCTCTTC	1 cut(s)	834
LmnI	GCTCC	3 cut(s)	284, 539, 731
Lsp1109I	GCAGC	3 cut(s)	721, 749, 1024
LweI	GCATC	2 cut(s)	121, 430
MabI	ACCWGGT	1 cut(s)	253
MaeI	CTAG	3 cut(s)	288, 444, 662
MaeII	ACGT	2 cut(s)	97, 430
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	4 cut(s)	84, 336, 627, 643
MbiI	CCGCTC	1 cut(s)	597
MboI	GATC	4 cut(s)	82, 334, 625, 641
MboII	GAAGA	8 cut(s)	31, 167, 229, 341, 449, 800, 821, 947
MfeI	CAATTG	1 cut(s)	846
MluCI	AATT	8 cut(s)	88, 470, 492, 606, 620, 813, 846, 967
MnlI	CCTC	8 cut(s)	83, 183, 202, 350, 762, 771, 940, 966
MroXI	GAANNNNTTC	2 cut(s)	369, 939
MseI	TTAA	3 cut(s)	495, 888, 930
MspA1I	CMGCKG	3 cut(s)	506, 773, 1001
MspI	CCGG	2 cut(s)	671, 687
MspR9I	CCNGG	3 cut(s)	255, 728, 780
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	2 cut(s)	531, 595
MvaI	CCWGG	3 cut(s)	255, 728, 780
MwoI	GCNNNNNNNGC	2 cut(s)	449, 1046
NcoI	CCATGG	1 cut(s)	1063
NdeII	GATC	4 cut(s)	82, 334, 625, 641
NlaIII	CATG	4 cut(s)	616, 1010, 1058, 1067
NlaIV	GGNNCC	4 cut(s)	144, 658, 720, 909
NmeAIII	GCCGAG	1 cut(s)	1030
NspI	RCATGY	1 cut(s)	1058
PciSI	GCTCTTC	1 cut(s)	834
PctI	GAATGC	2 cut(s)	531, 595
PdmI	GAANNNNTTC	2 cut(s)	369, 939
PfeI	GAWTC	2 cut(s)	220, 1020
PflMI	CCANNNNNTGG	1 cut(s)	278
PinAI	ACCGGT	1 cut(s)	686
PkrI	GCNGC	3 cut(s)	736, 739, 1039
Psp6I	CCWGG	3 cut(s)	253, 726, 778
PspGI	CCWGG	3 cut(s)	253, 726, 778
PspN4I	GGNNCC	4 cut(s)	144, 658, 720, 909
PspPI	GGNCC	5 cut(s)	58, 251, 269, 356, 656
PsrI	GAACNNNNNNTAC	2 cut(s)	354, 386
PstI	CTGCAG	1 cut(s)	739
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	506
RsaI	GTAC	3 cut(s)	69, 144, 1013
RsaNI	GTAC	3 cut(s)	68, 143, 1012
SalI	GTCGAC	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	495, 888, 930
SatI	GCNGC	3 cut(s)	735, 738, 1038
Sau3AI	GATC	4 cut(s)	82, 334, 625, 641
Sau96I	GGNCC	5 cut(s)	58, 251, 269, 356, 656
ScrFI	CCNGG	3 cut(s)	255, 728, 780
SexAI	ACCWGGT	1 cut(s)	253
SfaNI	GCATC	2 cut(s)	121, 430
SfcI	CTRYAG	3 cut(s)	360, 735, 837
SgrAI	CRCCGGYG	1 cut(s)	686
SinI	GGWCC	4 cut(s)	58, 251, 356, 656
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	8 cut(s)	88, 470, 492, 606, 620, 813, 846, 967
SsiI	CCGC	5 cut(s)	249, 282, 595, 771, 999
SspMI	CTAG	3 cut(s)	288, 444, 662
StyD4I	CCNGG	3 cut(s)	253, 726, 778
StyI	CCWWGG	2 cut(s)	661, 1063
TaaI	ACNGT	1 cut(s)	873
TaiI	ACGT	2 cut(s)	100, 433
TaqI	TCGA	2 cut(s)	487, 1023
TasI	AATT	8 cut(s)	88, 470, 492, 606, 620, 813, 846, 967
TatI	WGTACW	1 cut(s)	1011
TfiI	GAWTC	2 cut(s)	220, 1020
Tru1I	TTAA	3 cut(s)	495, 888, 930
Tru9I	TTAA	3 cut(s)	495, 888, 930
TscAI	CASTG	4 cut(s)	195, 459, 637, 747
TseI	GCWGC	3 cut(s)	734, 737, 1037
TspDTI	ATGAA	2 cut(s)	33, 582
TspGWI	ACGGA	2 cut(s)	50, 920
TspRI	CASTG	4 cut(s)	195, 459, 637, 747
Van91I	CCANNNNNTGG	1 cut(s)	278
VpaK11BI	GGWCC	4 cut(s)	58, 251, 356, 656
XapI	RAATTY	2 cut(s)	813, 967
XceI	RCATGY	1 cut(s)	1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XmaJI	CCTAGG	1 cut(s)	661
XmiI	GTMKAC	3 cut(s)	30, 487, 987
XmnI	GAANNNNTTC	2 cut(s)	369, 939
XspI	CTAG	3 cut(s)	288, 444, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.