Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008193

Physical Location & Seq

Genomic Coordinates Forward (+)

31852445 .. 31852852

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1189600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGGTCTTTTCCTCTCCATCATTGCAATCGGCACTGTAGAGCTCAGATGGAGCAATGTCAGCATCAAGGACTGGTGGCGAAACGAGCAGTTTTGGGTGATTGGCGATGTGTCAGCACTTCTTTTCGCCGTGTTCCAAGGCCTTCTTAAAGTCTTAACAGGGGTTGACACCGCCTTCAGAGTGACATCAAAAGCGGCCAAGGATGCTGAGTTTCGGGAACTCTACCTCTTCGAATGGACTTCTCTTCTCGTACCACCACCTACTCTCCCTATCTTGAACATGGTGGGAGTTTTTGCTGGAGTTTCTGGTGCCATTAAAAATGGCTACCACTCTGGGGTCCTTTGTGTGGCAAGCTGTTTTTCTCCTTCTGGGTCATTGTTTATCTTCATCCTTTCCTCAAGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

136

Amino Acids

14.82

Weight (kDa)

7.79

Isoelectric Point (pI)

23.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 112	1.7e-44	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44030 AT5G44030 AT5G44030
fragaria_vesca	FvH4_2g20740
malus_domestica	MD00G1061100.v1.1 MD05G1189500.v1.1 MD05G1189600.v1.1 MD05G1189700.v1.1
prunus_persica	Prupe.8G216900_v2.0.a1
pyrus_communis	pycom05g17480 pycom10g15390
rosa_chinensis	RchiOBHm_Chr6g0286921
rosa_laevigata	RLG00000012526
rosa_multiflora	Rmu_sc0002520.1_g000012 Rmu_sc0023638.1_g000001 Rmu_sc0042599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181800
rosa_rugosa	Rorug06G0185100
rosa_samantha	Rh6AG296900 Rh6BG301400 Rh6CG308900 Rh6DG292700
rosa_wichuraiana	Rw6G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	2 cut(s)	171, 194
AcoI	YGGCCR	1 cut(s)	195
AcuI	CTGAAG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	334, 346
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	2 cut(s)	43, 354
AluI	AGCT	2 cut(s)	43, 354
Alw21I	GWGCWC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	139, 195
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BccI	CCATC	2 cut(s)	26, 42
BceAI	ACGGC	1 cut(s)	113
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	2 cut(s)	310, 338
BmsI	GCATC	2 cut(s)	72, 193
BpmI	CTGGAG	1 cut(s)	318
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	136, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 346
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	2 cut(s)	21, 61
BseDI	CCNNGG	2 cut(s)	136, 198
BseGI	GGATG	2 cut(s)	208, 387
BseLI	CCNNNNNNNGG	2 cut(s)	334, 346
BseMI	GCAATG	2 cut(s)	21, 61
BseMII	CTCAG	2 cut(s)	58, 198
BseNI	ACTGG	1 cut(s)	77
BshFI	GGCC	2 cut(s)	141, 197
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	334, 346
BsnI	GGCC	2 cut(s)	141, 197
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	45
BspACI	CCGC	2 cut(s)	171, 194
BspANI	GGCC	2 cut(s)	141, 197
BspCNI	CTCAG	2 cut(s)	57, 199
BspLI	GGNNCC	2 cut(s)	310, 338
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	2 cut(s)	21, 61
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	136, 198
BssT1I	CCWWGG	2 cut(s)	136, 198
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	2 cut(s)	233, 249
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	2 cut(s)	44, 207
BstF5I	GGATG	2 cut(s)	208, 387
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 85, 203
BstSFI	CTRYAG	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	141, 197
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	208, 387
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	5 cut(s)	43, 141, 197, 324, 354
CviKI_1	RGCY	5 cut(s)	43, 141, 197, 324, 354
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	44, 207
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	233, 249
EarI	CTCTTC	2 cut(s)	233, 249
Ecl136II	GAGCTC	1 cut(s)	43
Eco130I	CCWWGG	2 cut(s)	136, 198
Eco147I	AGGCCT	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	136, 198
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	136, 198
FaeI	CATG	1 cut(s)	283
FaiI	YATR	1 cut(s)	281
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	215, 374
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	2 cut(s)	141, 197
Hin1II	CATG	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	47, 179
Hpy188III	TCNNGA	2 cut(s)	215, 274
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	152, 184, 375
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	26
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 85, 203
HpyF3I	CTNAG	2 cut(s)	44, 207
Hsp92II	CATG	1 cut(s)	283
LmnI	GCTCC	1 cut(s)	51
LpnPI	CCDG	6 cut(s)	58, 144, 282, 291, 318, 354
LweI	GCATC	2 cut(s)	72, 193
MaeIII	GTNAC	1 cut(s)	181
MboII	GAAGA	3 cut(s)	220, 236, 376
MhlI	GDGCHC	1 cut(s)	45
MnlI	CCTC	3 cut(s)	23, 236, 406
MseI	TTAA	3 cut(s)	147, 155, 315
MwoI	GCNNNNNNNGC	3 cut(s)	60, 85, 203
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	310, 338
NmuCI	GTSAC	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	196
PpuMI	RGGWCCY	1 cut(s)	337
Psp124BI	GAGCTC	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	310, 338
PspPI	GGNCC	1 cut(s)	337
PspPPI	RGGWCCY	1 cut(s)	337
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	147, 155, 315
SatI	GCNGC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	45, 228, 262, 356
SfaNI	GCATC	2 cut(s)	72, 193
SfcI	CTRYAG	1 cut(s)	36
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
SseBI	AGGCCT	1 cut(s)	141
SsiI	CCGC	2 cut(s)	171, 194
SstI	GAGCTC	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	136, 198
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	231
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	3 cut(s)	147, 155, 315
Tru9I	TTAA	3 cut(s)	147, 155, 315
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	376
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.