Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002520.1

Orthogroup ID

OG0008193

Physical Location & Seq

Genomic Coordinates Forward (+)

50261 .. 51294

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002520.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggcctcaaactccatgggaggcttgtatactggttctcacaaccaaggcgaagacgaactccatgtgttgcgcgcctctgaagagaaccggcatccaacacggcagtcagtgccgaaagtgtgcagagtttgtggagatgatataggatacaaagaagatggggagttgttcgtggcatgtcatgtgtgtggcttcccagtttgtaggccttgttatgattatgagaggagtgaaggcacccagtgttgccctcagtgcaacactcgctataagcgtcacaaaggttgtcctagagttgctggagacgacgaagattttgatgcagatgattttgatgaggaatttcagattgttaagaatcacaatgatcatgactctgctgatgagaaaaatcatgccattgatattccttcggagaatggagaccataatcaacagaaatggcaaaccaataatcaacctttctctgttcaaggaagtgttaaggattttgaaggagacaaagacgttttgggtagtgcagagtggaaagaaagagtggagaagtggaaagtgaggcaagaaaagagaggcttggtgaacaaggatgatggaaatgatgatgatcaaggcctagaagatgacttcctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

211

Amino Acids

24.03

Weight (kDa)

4.72

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44030 AT5G44030 AT5G44030
fragaria_vesca	FvH4_2g20740
malus_domestica	MD00G1061100.v1.1 MD05G1189500.v1.1 MD05G1189600.v1.1 MD05G1189700.v1.1
prunus_persica	Prupe.8G216900_v2.0.a1
pyrus_communis	pycom05g17480 pycom10g15390
rosa_chinensis	RchiOBHm_Chr6g0286921
rosa_laevigata	RLG00000012526
rosa_multiflora	Rmu_sc0002520.1_g000012 Rmu_sc0023638.1_g000001 Rmu_sc0042599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181800
rosa_rugosa	Rorug06G0185100
rosa_samantha	Rh6AG296900 Rh6BG301400 Rh6CG308900 Rh6DG292700
rosa_wichuraiana	Rw6G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	29
AccII	CGCG	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	344
AcuI	CTGAAG	1 cut(s)	102
AdeI	CACNNNGTG	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	476, 497
Alw26I	GTCTC	3 cut(s)	300, 420, 495
AoxI	GGCC	3 cut(s)	3, 209, 613
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AspLEI	GCGC	2 cut(s)	75, 77
AsuHPI	GGTGA	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	2 cut(s)	155, 587
BceAI	ACGGC	1 cut(s)	119
BciVI	GTATCC	1 cut(s)	143
BclI	TGATCA	2 cut(s)	370, 607
BcoDI	GTCTC	3 cut(s)	300, 420, 495
BfaI	CTAG	2 cut(s)	294, 617
BfuI	GTATCC	1 cut(s)	143
BmiI	GGNNCC	1 cut(s)	241
BmrI	ACTGGG	2 cut(s)	194, 238
BmsI	GCATC	2 cut(s)	103, 313
BmuI	ACTGGG	2 cut(s)	194, 238
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	15, 46
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	3 cut(s)	37, 200, 244
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	15, 46
BseGI	GGATG	2 cut(s)	94, 595
BseJI	GATNNNNATC	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	3 cut(s)	37, 200, 244
BsePI	GCGCGC	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	145, 543
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	3 cut(s)	5, 211, 615
BshNI	GGYRCC	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	91
BsmAI	GTCTC	3 cut(s)	300, 420, 495
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	5, 211, 615
Bso31I	GGTCTC	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	370, 607
Bsp19I	CCATGG	1 cut(s)	15
BspANI	GGCC	3 cut(s)	5, 211, 615
BspCNI	CTCAG	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	3 cut(s)	37, 200, 244
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	15, 46
BssHII	GCGCGC	1 cut(s)	73
BssMI	GATC	2 cut(s)	370, 607
BssNAI	GTATAC	1 cut(s)	30
BssT1I	CCWWGG	2 cut(s)	15, 46
Bst1107I	GTATAC	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	255
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	94, 595
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	75, 77
BstKTI	GATC	2 cut(s)	373, 610
BstMAI	GTCTC	3 cut(s)	300, 420, 495
BstMBI	GATC	2 cut(s)	370, 607
BstMWI	GCNNNNNNNGC	3 cut(s)	112, 258, 267
BstNSI	RCATGY	1 cut(s)	183
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	5, 211, 615
BtgI	CCRYGG	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	94, 595
BtsIMutI	CAGTG	3 cut(s)	117, 251, 263
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	373
CfoI	GCGC	2 cut(s)	75, 77
Cfr10I	RCCGGY	1 cut(s)	90
CseI	GACGC	1 cut(s)	266
CviAII	CATG	6 cut(s)	16, 65, 180, 185, 374, 398
CviJI	RGCY	6 cut(s)	5, 24, 195, 211, 576, 615
CviKI_1	RGCY	6 cut(s)	5, 24, 195, 211, 576, 615
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	2 cut(s)	372, 609
DpnII	GATC	2 cut(s)	370, 607
DraIII	CACNNNGTG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco130I	CCWWGG	2 cut(s)	15, 46
Eco147I	AGGCCT	2 cut(s)	211, 615
Eco31I	GGTCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	15, 46
ErhI	CCWWGG	2 cut(s)	15, 46
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	6 cut(s)	19, 68, 183, 188, 377, 401
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FatI	CATG	6 cut(s)	15, 64, 179, 184, 373, 397
FbaI	TGATCA	2 cut(s)	370, 607
FblI	GTMKAC	1 cut(s)	29
FokI	GGATG	2 cut(s)	81, 602
FspBI	CTAG	2 cut(s)	294, 617
GlaI	GCGC	2 cut(s)	74, 76
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	3 cut(s)	5, 211, 615
HapII	CCGG	1 cut(s)	91
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	75, 77
Hin1II	CATG	6 cut(s)	19, 68, 183, 188, 377, 401
Hin6I	GCGC	2 cut(s)	73, 75
HinP1I	GCGC	2 cut(s)	73, 75
HinfI	GANTC	2 cut(s)	361, 377
HpaII	CCGG	1 cut(s)	91
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	2 cut(s)	30, 583
Hpy188I	TCNGA	3 cut(s)	82, 351, 418
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	2 cut(s)	30, 583
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	3 cut(s)	230, 423, 491
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	4 cut(s)	126, 261, 326, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	112, 258, 267
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	6 cut(s)	19, 68, 183, 188, 377, 401
HspAI	GCGC	2 cut(s)	73, 75
Ksp22I	TGATCA	2 cut(s)	370, 607
Kzo9I	GATC	2 cut(s)	370, 607
LpnPI	CCDG	5 cut(s)	18, 104, 213, 257, 288
LweI	GCATC	2 cut(s)	103, 313
MaeI	CTAG	2 cut(s)	294, 617
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	372, 609
MboI	GATC	2 cut(s)	370, 607
MboII	GAAGA	5 cut(s)	65, 95, 170, 326, 632
MluCI	AATT	1 cut(s)	344
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	8 cut(s)	14, 16, 88, 222, 264, 334, 552, 566
MseI	TTAA	2 cut(s)	357, 486
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	112, 258, 267
NcoI	CCATGG	1 cut(s)	15
NdeII	GATC	2 cut(s)	370, 607
NlaIII	CATG	6 cut(s)	19, 68, 183, 188, 377, 401
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	1 cut(s)	278
NspI	RCATGY	1 cut(s)	183
PagI	TCATGA	1 cut(s)	373
PauI	GCGCGC	1 cut(s)	73
PceI	AGGCCT	2 cut(s)	211, 615
PcsI	WCGNNNNNNNCGW	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	371
PpsI	GAGTC	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	241
PteI	GCGCGC	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	357, 486
Sau3AI	GATC	2 cut(s)	370, 607
SchI	GAGTC	1 cut(s)	371
SetI	ASST	3 cut(s)	289, 466, 513
SfaNI	GCATC	2 cut(s)	103, 313
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	344
SseBI	AGGCCT	2 cut(s)	211, 615
SspMI	CTAG	2 cut(s)	294, 617
StuI	AGGCCT	2 cut(s)	211, 615
StyI	CCWWGG	2 cut(s)	15, 46
TaiI	ACGT	1 cut(s)	513
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	357, 486
Tru9I	TTAA	2 cut(s)	357, 486
TscAI	CASTG	3 cut(s)	117, 251, 263
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspRI	CASTG	3 cut(s)	117, 251, 263
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	29
XspI	CTAG	2 cut(s)	294, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.