Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008193

Physical Location & Seq

Genomic Coordinates Forward (+)

29323089 .. 29325032

Gene Structure 1944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGACGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGATCGACGTGTTTGTGAACGGGGTGGACGAGGACGTGTTTGTGAACGGTCGCTGCAATCCCAGAAGCAGGGCCCTGTGCCAACAACAAAAACATTGATTGCATTGTTTGCTCTTTGTGCAGACAGGGATGCTTGGAATACACAGCTGGTACCGGAATTTGCTAAGCTTGGCATAGTATGCACATGGTGGAATGAGCATGAAATGGGATGTACAATCAATCCAGCAATAGACATTCCGCGCATGGATGTCGCTATTAGGGCTTCGGAATCTCTTGAAGCTTTCACAACGGGTTTCTCGGCAAAGACGGCATTGAAAATACTGTCGGGCGATTATCGGTTAGTCTTTAGAGACTTTGATGACAAGATTAGTGAGAATTCAGTGTGTGATCGCTTGAACCAGTTTGTTGACAAATATGAAGAATTTATGCAGGTGGTTGGTCAGGTCGTTGGTCAGCAGTTCCCCTGTGAAATTAAACATAATGAACATTGTATTGCTATCGTGGCAAATGCACAAATACGTAGTATTATGGCGGATCTCGTGTGGGAAGTAGTTATTTCCGATAATTATGATGTTCAACAAAAGCTCGAAAGTATGTTGGAGTTTTTTGAGGAGCTTTCCGGATTTGAACATAATCCATACACTGATTCAGGGCCTGGACATGATGATATGATGGATCCAAGCAAATCACTGAATGATCAAATAGGCCAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

251

Amino Acids

28.6

Weight (kDa)

4.56

Isoelectric Point (pI)

30.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44030 AT5G44030 AT5G44030
fragaria_vesca	FvH4_2g20740
malus_domestica	MD00G1061100.v1.1 MD05G1189500.v1.1 MD05G1189600.v1.1 MD05G1189700.v1.1
prunus_persica	Prupe.8G216900_v2.0.a1
pyrus_communis	pycom05g17480 pycom10g15390
rosa_chinensis	RchiOBHm_Chr6g0286921
rosa_laevigata	RLG00000012526
rosa_multiflora	Rmu_sc0002520.1_g000012 Rmu_sc0023638.1_g000001 Rmu_sc0042599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181800
rosa_rugosa	Rorug06G0185100
rosa_samantha	Rh6AG296900 Rh6BG301400 Rh6CG308900 Rh6DG292700
rosa_wichuraiana	Rw6G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	1 cut(s)	190
AccII	CGCG	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	2 cut(s)	278, 572
AclWI	GGATC	4 cut(s)	51, 582, 710, 723
AcsI	RAATTY	3 cut(s)	197, 415, 461
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	20, 192, 253
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	3 cut(s)	27, 49, 76
AgsI	TTSAA	5 cut(s)	317, 355, 436, 617, 668
AjiI	CACGTC	2 cut(s)	50, 77
AjnI	CCWGG	1 cut(s)	694
AluBI	AGCT	5 cut(s)	187, 208, 320, 625, 655
AluI	AGCT	5 cut(s)	187, 208, 320, 625, 655
Alw26I	GTCTC	2 cut(s)	2, 384
AlwI	GGATC	4 cut(s)	51, 582, 710, 723
AlwNI	CAGNNNCTG	1 cut(s)	695
Aor13HI	TCCGGA	1 cut(s)	659
AoxI	GGCC	3 cut(s)	112, 692, 745
ApaI	GGGCCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	94
ApoI	RAATTY	3 cut(s)	197, 415, 461
Asp718I	GGTACC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	112, 113, 692
BaeGI	GKGCMC	1 cut(s)	116
BamHI	GGATCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	578
BbvI	GCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	706
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	1 cut(s)	736
BcoDI	GTCTC	2 cut(s)	2, 384
BfmI	CTRYAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	1 cut(s)	95
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	696
BmgBI	CACGTC	2 cut(s)	50, 77
BmgT120I	GGNCC	3 cut(s)	112, 113, 692
BmiI	GGNNCC	3 cut(s)	114, 192, 717
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	1 cut(s)	160
Bpu1102I	GCTNAGC	1 cut(s)	204
BsaAI	YACGTR	1 cut(s)	560
BsaWI	WCCGGW	2 cut(s)	193, 659
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse1I	ACTGG	1 cut(s)	439
BseAI	TCCGGA	1 cut(s)	659
BseBI	CCWGG	1 cut(s)	696
BseGI	GGATG	3 cut(s)	175, 254, 292
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	81
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	3 cut(s)	114, 694, 747
BshNI	GGYRCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	194, 660
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	2, 384
BsmBI	CGTCTC	1 cut(s)	2
BsnI	GGCC	3 cut(s)	114, 694, 747
Bsp120I	GGGCCC	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	5 cut(s)	43, 427, 574, 715, 736
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	2 cut(s)	278, 572
BspANI	GGCC	3 cut(s)	114, 694, 747
BspEI	TCCGGA	1 cut(s)	659
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	3 cut(s)	114, 192, 717
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	4 cut(s)	51, 582, 710, 723
BspT107I	GGYRCC	1 cut(s)	190
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	439
BssMI	GATC	5 cut(s)	43, 427, 574, 715, 736
BssSI	CACGAG	1 cut(s)	578
Bst2BI	CACGAG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	90, 363
BstAPI	GCANNNNNTGC	2 cut(s)	149, 219
BstAUI	TGTACA	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	560
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	175, 254, 292
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	5 cut(s)	46, 430, 577, 718, 739
BstMAI	GTCTC	2 cut(s)	2, 384
BstMBI	GATC	5 cut(s)	43, 427, 574, 715, 736
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 158, 219, 299, 347, 542
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstSFI	CTRYAG	1 cut(s)	752
BstSLI	GKGCMC	1 cut(s)	116
BstSNI	TACGTA	1 cut(s)	560
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	1 cut(s)	81
BstX2I	RGATCY	2 cut(s)	574, 715
BstYI	RGATCY	2 cut(s)	574, 715
BsuRI	GGCC	3 cut(s)	114, 694, 747
BtrI	CACGTC	2 cut(s)	50, 77
BtsCI	GGATG	3 cut(s)	175, 254, 292
BtsIMutI	CAGTG	3 cut(s)	426, 681, 728
BveI	ACCTGC	1 cut(s)	460
CaiI	CAGNNNCTG	1 cut(s)	695
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	3 cut(s)	112, 113, 692
Csp6I	GTAC	3 cut(s)	19, 191, 252
CviAII	CATG	4 cut(s)	225, 239, 283, 701
CviJI	RGCY	9 cut(s)	114, 187, 208, 302, 320, 625, 655, 694, 747
CviKI_1	RGCY	9 cut(s)	114, 187, 208, 302, 320, 625, 655, 694, 747
CviQI	GTAC	3 cut(s)	19, 191, 252
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	5 cut(s)	45, 429, 576, 717, 738
DpnII	GATC	5 cut(s)	43, 427, 574, 715, 736
DraIII	CACNNNGTG	1 cut(s)	228
EciI	GGCGGA	1 cut(s)	587
Eco105I	TACGTA	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	116
EcoO109I	RGGNCCY	3 cut(s)	112, 113, 692
EcoRI	GAATTC	1 cut(s)	415
EcoRII	CCWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	4 cut(s)	228, 242, 286, 704
FatI	CATG	4 cut(s)	224, 238, 282, 700
FbaI	TGATCA	1 cut(s)	736
Fnu4HI	GCNGC	1 cut(s)	95
FokI	GGATG	3 cut(s)	182, 261, 299
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	95
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	95
HaeIII	GGCC	3 cut(s)	114, 694, 747
HapII	CCGG	2 cut(s)	194, 660
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	228, 242, 286, 704
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HindIII	AAGCTT	2 cut(s)	206, 318
HinfI	GANTC	2 cut(s)	308, 686
HpaII	CCGG	2 cut(s)	194, 660
Hpy166II	GTNNAC	5 cut(s)	37, 59, 68, 86, 448
Hpy188I	TCNGA	2 cut(s)	307, 601
Hpy188III	TCNNGA	2 cut(s)	314, 660
Hpy8I	GTNNAC	5 cut(s)	37, 59, 68, 86, 448
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	2 cut(s)	90, 363
HpyCH4IV	ACGT	4 cut(s)	27, 49, 76, 559
HpyCH4V	TGCA	6 cut(s)	97, 143, 161, 222, 469, 551
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 158, 219, 299, 347, 542
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	4 cut(s)	27, 49, 76, 559
Hsp92II	CATG	4 cut(s)	228, 242, 286, 704
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	659
KpnI	GGTACC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	43, 427, 574, 715, 736
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	1 cut(s)	81
LweI	GCATC	1 cut(s)	160
MaeII	ACGT	4 cut(s)	27, 49, 76, 559
MalI	GATC	5 cut(s)	45, 429, 576, 717, 738
MboI	GATC	5 cut(s)	43, 427, 574, 715, 736
MboII	GAAGA	1 cut(s)	470
MflI	RGATCY	2 cut(s)	574, 715
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	5 cut(s)	197, 415, 461, 510, 604
MmeI	TCCRAC	1 cut(s)	618
MnlI	CCTC	3 cut(s)	34, 65, 643
MroI	TCCGGA	1 cut(s)	659
MseI	TTAA	1 cut(s)	513
MspA1I	CMGCKG	1 cut(s)	187
MspI	CCGG	2 cut(s)	194, 660
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	6 cut(s)	149, 158, 219, 299, 347, 542
NdeII	GATC	5 cut(s)	43, 427, 574, 715, 736
NlaIII	CATG	4 cut(s)	228, 242, 286, 704
NlaIV	GGNNCC	3 cut(s)	114, 192, 717
NmeAIII	GCCGAG	1 cut(s)	317
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	308, 686
PkrI	GCNGC	1 cut(s)	96
Ppu21I	YACGTR	1 cut(s)	560
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	114, 192, 717
PspOMI	GGGCCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	112, 113, 692
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	2 cut(s)	574, 715
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	3 cut(s)	20, 192, 253
RsaNI	GTAC	3 cut(s)	19, 191, 252
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	1 cut(s)	95
Sau3AI	GATC	5 cut(s)	43, 427, 574, 715, 736
Sau96I	GGNCC	3 cut(s)	112, 113, 692
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	752
SnaBI	TACGTA	1 cut(s)	560
Sse9I	AATT	5 cut(s)	197, 415, 461, 510, 604
SsiI	CCGC	2 cut(s)	278, 572
StyD4I	CCNGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	90, 363
TaiI	ACGT	4 cut(s)	30, 52, 79, 562
TaqI	TCGA	2 cut(s)	46, 627
TasI	AATT	5 cut(s)	197, 415, 461, 510, 604
TatI	WGTACW	1 cut(s)	251
TfiI	GAWTC	2 cut(s)	308, 686
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	426, 688, 735
TseI	GCWGC	1 cut(s)	94
TspDTI	ATGAA	3 cut(s)	255, 471, 537
TspRI	CASTG	3 cut(s)	426, 688, 735
XapI	RAATTY	3 cut(s)	197, 415, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.