Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042599.1

Orthogroup ID

OG0008193

Physical Location & Seq

Genomic Coordinates Forward (+)

62 .. 1709

Gene Structure 1648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042599.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

atgaaaggcctagatgggattcaaggaccggtatatgttggcacaggatgtgtcttcaacaggccggcgttgtatggctatgatccgccagtgtcagaaaagcaacctaagatgacatgtgactgctggccttcatggtgctgctgtggatgctgtcgtgggggttcgaagaagtccaagtctaagaagggtggagtaagaagtcttcttgggggactttactcgaagaagaagaagaaaatgatggggaagaactatgtgaggaaagggaggggaccaatgtttgatcttgaagagattgaagaagggtttgaaggttatgatgagttggagaaatcatctctcatgtcacagaaaaacttcgagaaacgatttggacaatccccggttttcattgcttccactctcatggaaaatggtgggctacctgaagggattaatagcacagcacttgttaaggaggccattcatgttataagttgtggctatgaagaaaaaactgaatggggaaaagagattggttggatttatggttcagttacagaagatattttgactggcttcaaaatgcattgtagaggatggaagtcagtctactgtgtgccaaaaagaccagctttcaagggatctgctcctatcaatttgtcagatcggctgcaccaagttttgagatgggctcttggctctgttgaaatcttcctcagtcgtcattgtcccttatggtatgcctggggaggaaagctgaaattgctggagagacttgcttacatcaacaccatagtctaccctttcacttccatccccttacttgcctattgtaccattccagctgtttgtcttttgactggaaagttcatcatccccacactgaacaactttgccagtatatggttcttggctcttttcctctccatcattgcaaccagtgtgttagagctcagatggagcggtgttagcatcgaagacttgtggcgtaatgagcagttttgggtgatcggtggtgtctctgcacatctgtttgcagtcttccaaggcctcctcaaagtccttgctggagttgacaccaactttacagtcacatcaaaagcagcagatgatgctgagtttggggaactctacctgttcaaatggactacactactcataccaccaacgacccttatcatcttgaacatggtgggagtagttgctggagtttctgatgccattaacaatggctacggctcatggggtccgttgttcggaaagctcttctttgccttctgggtcattgttcatctataccctttcctcaaaggtttgatgggaaggcaaaacaggactcctaccattgtggtactttggtcagttcttcttgcctccatcttctcattggtttgggtaagaattgatcccttcttggctaagcaaactggaccaattcttaaacaatgtggggtggactgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

482

Amino Acids

53.69

Weight (kDa)

9.02

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44030 AT5G44030 AT5G44030
fragaria_vesca	FvH4_2g20740
malus_domestica	MD00G1061100.v1.1 MD05G1189500.v1.1 MD05G1189600.v1.1 MD05G1189700.v1.1
prunus_persica	Prupe.8G216900_v2.0.a1
pyrus_communis	pycom05g17480 pycom10g15390
rosa_chinensis	RchiOBHm_Chr6g0286921
rosa_laevigata	RLG00000012526
rosa_multiflora	Rmu_sc0002520.1_g000012 Rmu_sc0023638.1_g000001 Rmu_sc0042599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181800
rosa_rugosa	Rorug06G0185100
rosa_samantha	Rh6AG296900 Rh6BG301400 Rh6CG308900 Rh6DG292700
rosa_wichuraiana	Rw6G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccB7I	CCANNNNNTGG	1 cut(s)	888
AccBSI	CCGCTC	1 cut(s)	948
AccI	GTMKAC	2 cut(s)	594, 783
AciI	CCGC	2 cut(s)	86, 948
AclWI	GGATC	3 cut(s)	77, 634, 1385
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	820, 1338
AfiI	CCNNNNNNNGG	2 cut(s)	888, 1241
AflIII	ACRYGT	1 cut(s)	116
AgeI	ACCGGT	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	728
AloI	GAACNNNNNNTCC	2 cut(s)	517, 549
AluBI	AGCT	5 cut(s)	617, 742, 830, 937, 1249
AluI	AGCT	5 cut(s)	617, 742, 830, 937, 1249
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	2 cut(s)	751, 1009
AlwI	GGATC	3 cut(s)	77, 634, 1385
AoxI	GGCC	5 cut(s)	7, 62, 128, 462, 1033
ApeKI	GCWGC	3 cut(s)	141, 655, 1088
AseI	ATTAAT	1 cut(s)	438
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	4 cut(s)	26, 275, 1232, 1415
AsuC2I	CCSGG	1 cut(s)	386
AsuHPI	GGTGA	1 cut(s)	1003
AsuII	TTCGAA	1 cut(s)	167
AvaII	GGWCC	4 cut(s)	26, 275, 1232, 1415
BaeI	ACNNNNGTAYC	2 cut(s)	1328, 1361
BanII	GRGCYC	2 cut(s)	679, 939
BarI	GAAGNNNNNNTAC	4 cut(s)	189, 221, 578, 610
BbsI	GAAGAC	4 cut(s)	46, 197, 969, 1018
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	3 cut(s)	128, 642, 1100
BccI	CCATC	9 cut(s)	8, 238, 576, 666, 806, 920, 936, 1297, 1370
BceAI	ACGGC	1 cut(s)	1237
BciT130I	CCWGG	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	2 cut(s)	751, 1009
BfaI	CTAG	1 cut(s)	11
BisI	GCNGC	3 cut(s)	142, 656, 1089
BlpI	GCTNAGC	1 cut(s)	1404
BlsI	GCNGC	3 cut(s)	143, 657, 1090
Bme1390I	CCNGG	2 cut(s)	386, 730
Bme18I	GGWCC	4 cut(s)	26, 275, 1232, 1415
BmgT120I	GGNCC	4 cut(s)	26, 275, 1232, 1415
BmiI	GGNNCC	2 cut(s)	276, 1233
BmrFI	CCNGG	2 cut(s)	386, 730
BmsI	GCATC	4 cut(s)	140, 966, 1087, 1192
BpiI	GAAGAC	4 cut(s)	46, 197, 969, 1018
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpmI	CTGGAG	3 cut(s)	773, 1074, 1212
Bpu1102I	GCTNAGC	1 cut(s)	1404
Bpu14I	TTCGAA	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	386
BsaJI	CCNNGG	3 cut(s)	384, 729, 1030
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	888, 1241
Bse118I	RCCGGY	2 cut(s)	28, 64
Bse1I	ACTGG	6 cut(s)	89, 562, 850, 882, 924, 1417
Bse3DI	GCAATG	2 cut(s)	393, 915
BseBI	CCWGG	1 cut(s)	730
BseDI	CCNNGG	3 cut(s)	384, 729, 1030
BseGI	GGATG	5 cut(s)	53, 155, 587, 798, 858
BseLI	CCNNNNNNNGG	2 cut(s)	888, 1241
BseMI	GCAATG	2 cut(s)	393, 915
BseMII	CTCAG	3 cut(s)	715, 952, 1092
BseNI	ACTGG	6 cut(s)	89, 562, 850, 882, 924, 1417
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	3 cut(s)	128, 642, 1100
BsgI	GTGCAG	2 cut(s)	641, 993
BshFI	GGCC	5 cut(s)	9, 64, 130, 464, 1035
BshTI	ACCGGT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	939
BsiSI	CCGG	3 cut(s)	29, 65, 386
BslFI	GGGAC	3 cut(s)	228, 288, 699
BslI	CCNNNNNNNGG	2 cut(s)	888, 1241
BsmAI	GTCTC	2 cut(s)	751, 1009
BsmFI	GGGAC	3 cut(s)	228, 288, 699
BsnI	GGCC	5 cut(s)	9, 64, 130, 464, 1035
Bsp119I	TTCGAA	1 cut(s)	167
Bsp1286I	GDGCHC	2 cut(s)	679, 939
Bsp143I	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
Bsp1720I	GCTNAGC	1 cut(s)	1404
BspACI	CCGC	2 cut(s)	86, 948
BspANI	GGCC	5 cut(s)	9, 64, 130, 464, 1035
BspCNI	CTCAG	3 cut(s)	714, 951, 1093
BspLI	GGNNCC	2 cut(s)	276, 1233
BspPI	GGATC	3 cut(s)	77, 634, 1385
BspQI	GCTCTTC	1 cut(s)	1256
BspT104I	TTCGAA	1 cut(s)	167
BsrBI	CCGCTC	1 cut(s)	948
BsrDI	GCAATG	2 cut(s)	393, 915
BsrFI	RCCGGY	2 cut(s)	28, 64
BsrI	ACTGG	6 cut(s)	89, 562, 850, 882, 924, 1417
BssAI	RCCGGY	2 cut(s)	28, 64
BssECI	CCNNGG	3 cut(s)	384, 729, 1030
BssMI	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
BssT1I	CCWWGG	1 cut(s)	1030
Bst2UI	CCWGG	1 cut(s)	730
Bst4CI	ACNGT	2 cut(s)	599, 1075
Bst6I	CTCTTC	2 cut(s)	288, 1256
BstAPI	GCANNNNNTGC	1 cut(s)	1097
BstBI	TTCGAA	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	66, 128
BstDEI	CTNAG	6 cut(s)	108, 183, 701, 938, 1101, 1404
BstF5I	GGATG	5 cut(s)	53, 155, 587, 798, 858
BstKTI	GATC	6 cut(s)	85, 289, 629, 652, 996, 1393
BstMAI	GTCTC	2 cut(s)	751, 1009
BstMBI	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
BstMWI	GCNNNNNNNGC	5 cut(s)	150, 748, 954, 979, 1097
BstNI	CCWGG	1 cut(s)	730
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	2 cut(s)	384, 728
BstV1I	GCAGC	3 cut(s)	128, 642, 1100
BstV2I	GAAGAC	4 cut(s)	46, 197, 969, 1018
BstX2I	RGATCY	1 cut(s)	626
BstXI	CCANNNNNNTGG	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	626
BsuRI	GGCC	5 cut(s)	9, 64, 130, 464, 1035
BtsCI	GGATG	5 cut(s)	53, 155, 587, 798, 858
BtsIMutI	CAGTG	3 cut(s)	96, 866, 931
Cac8I	GCNNGC	2 cut(s)	66, 128
Cfr10I	RCCGGY	2 cut(s)	28, 64
Cfr13I	GGNCC	4 cut(s)	26, 275, 1232, 1415
Csp6I	GTAC	2 cut(s)	819, 1337
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	7 cut(s)	117, 135, 346, 409, 470, 1174, 1227
CviQI	GTAC	2 cut(s)	819, 1337
DdeI	CTNAG	6 cut(s)	108, 183, 701, 938, 1101, 1404
DpnI	GATC	6 cut(s)	84, 288, 628, 651, 995, 1392
DpnII	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
Eam1104I	CTCTTC	2 cut(s)	288, 1256
EarI	CTCTTC	2 cut(s)	288, 1256
EciI	GGCGGA	1 cut(s)	75
Ecl136II	GAGCTC	1 cut(s)	937
Eco130I	CCWWGG	1 cut(s)	1030
Eco147I	AGGCCT	2 cut(s)	9, 1035
Eco24I	GRGCYC	2 cut(s)	679, 939
Eco47I	GGWCC	4 cut(s)	26, 275, 1232, 1415
Eco53kI	GAGCTC	1 cut(s)	937
Eco57I	CTGAAG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	937
EcoRII	CCWGG	1 cut(s)	728
EcoT14I	CCWWGG	1 cut(s)	1030
EcoT22I	ATGCAT	1 cut(s)	573
EcoT38I	GRGCYC	2 cut(s)	679, 939
ErhI	CCWWGG	1 cut(s)	1030
FaeI	CATG	7 cut(s)	120, 138, 349, 412, 473, 1177, 1230
FalI	AAGNNNNNCTT	4 cut(s)	601, 633, 1238, 1270
FaqI	GGGAC	3 cut(s)	228, 288, 699
FatI	CATG	7 cut(s)	116, 134, 345, 408, 469, 1173, 1226
FblI	GTMKAC	2 cut(s)	594, 783
Fnu4HI	GCNGC	3 cut(s)	142, 656, 1089
FokI	GGATG	5 cut(s)	60, 162, 594, 785, 845
FriOI	GRGCYC	2 cut(s)	679, 939
Fsp4HI	GCNGC	3 cut(s)	142, 656, 1089
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	3 cut(s)	142, 656, 1089
GsuI	CTGGAG	3 cut(s)	773, 1074, 1212
HaeIII	GGCC	5 cut(s)	9, 64, 130, 464, 1035
HapII	CCGG	3 cut(s)	29, 65, 386
Hin1II	CATG	7 cut(s)	120, 138, 349, 412, 473, 1177, 1230
HincII	GTYRAC	1 cut(s)	1060
HindII	GTYRAC	1 cut(s)	1060
HinfI	GANTC	2 cut(s)	19, 1321
HpaII	CCGG	3 cut(s)	29, 65, 386
HphI	GGTGA	1 cut(s)	1003
Hpy166II	GTNNAC	4 cut(s)	595, 784, 1060, 1441
Hpy188I	TCNGA	5 cut(s)	97, 649, 941, 1201, 1244
Hpy188III	TCNNGA	3 cut(s)	290, 364, 1168
Hpy8I	GTNNAC	4 cut(s)	595, 784, 1060, 1441
HpyAV	CCTTC	8 cut(s)	141, 181, 299, 308, 425, 1270, 1302, 1405
HpyCH4III	ACNGT	2 cut(s)	599, 1075
HpyCH4V	TGCA	5 cut(s)	571, 658, 920, 1010, 1022
HpyF10VI	GCNNNNNNNGC	5 cut(s)	150, 748, 954, 979, 1097
HpyF3I	CTNAG	6 cut(s)	108, 183, 701, 938, 1101, 1404
Hsp92II	CATG	7 cut(s)	120, 138, 349, 412, 473, 1177, 1230
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
LguI	GCTCTTC	1 cut(s)	1256
LmnI	GCTCC	2 cut(s)	637, 945
Lsp1109I	GCAGC	3 cut(s)	128, 642, 1100
LweI	GCATC	4 cut(s)	140, 966, 1087, 1192
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	4 cut(s)	119, 348, 538, 1075
MalI	GATC	6 cut(s)	84, 288, 628, 651, 995, 1392
MbiI	CCGCTC	1 cut(s)	948
MboI	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
MflI	RGATCY	1 cut(s)	626
MhlI	GDGCHC	2 cut(s)	679, 939
MluCI	AATT	4 cut(s)	640, 746, 1386, 1419
MlyI	GAGTC	1 cut(s)	1315
MmeI	TCCRAC	2 cut(s)	309, 503
Mph1103I	ATGCAT	1 cut(s)	573
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	4 cut(s)	438, 456, 1209, 1425
MslI	CAYNNNNRTG	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	3 cut(s)	29, 65, 386
MspR9I	CCNGG	2 cut(s)	386, 730
MvaI	CCWGG	1 cut(s)	730
MwoI	GCNNNNNNNGC	5 cut(s)	150, 748, 954, 979, 1097
NaeI	GCCGGC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
NgoMIV	GCCGGC	1 cut(s)	64
NlaIII	CATG	7 cut(s)	120, 138, 349, 412, 473, 1177, 1230
NlaIV	GGNNCC	2 cut(s)	276, 1233
NmuCI	GTSAC	3 cut(s)	119, 348, 1075
NsiI	ATGCAT	1 cut(s)	573
NspI	RCATGY	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	167
PceI	AGGCCT	2 cut(s)	9, 1035
PciI	ACATGT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	1256
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	888
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	143, 657, 1090
PleI	GAGTC	1 cut(s)	1315
PpsI	GAGTC	1 cut(s)	1315
PscI	ACATGT	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	438
PsiI	TTATAA	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	939
Psp6I	CCWGG	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	728
PspN4I	GGNNCC	2 cut(s)	276, 1233
PspPI	GGNCC	4 cut(s)	26, 275, 1232, 1415
PsuI	RGATCY	1 cut(s)	626
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	820, 1338
RsaNI	GTAC	2 cut(s)	819, 1337
RseI	CAYNNNNRTG	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	939
SapI	GCTCTTC	1 cut(s)	1256
SaqAI	TTAA	4 cut(s)	438, 456, 1209, 1425
SatI	GCNGC	3 cut(s)	142, 656, 1089
Sau3AI	GATC	6 cut(s)	82, 286, 626, 649, 993, 1390
Sau96I	GGNCC	4 cut(s)	26, 275, 1232, 1415
SchI	GAGTC	1 cut(s)	1315
ScrFI	CCNGG	2 cut(s)	386, 730
SduI	GDGCHC	2 cut(s)	679, 939
SfaNI	GCATC	4 cut(s)	140, 966, 1087, 1192
SfuI	TTCGAA	1 cut(s)	167
SinI	GGWCC	4 cut(s)	26, 275, 1232, 1415
SmiMI	CAYNNNNRTG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	640, 746, 1386, 1419
SseBI	AGGCCT	2 cut(s)	9, 1035
SsiI	CCGC	2 cut(s)	86, 948
SspMI	CTAG	1 cut(s)	11
SstI	GAGCTC	1 cut(s)	939
StuI	AGGCCT	2 cut(s)	9, 1035
StyD4I	CCNGG	2 cut(s)	384, 728
StyI	CCWWGG	1 cut(s)	1030
TaaI	ACNGT	2 cut(s)	599, 1075
TaqI	TCGA	4 cut(s)	167, 224, 363, 960
TasI	AATT	4 cut(s)	640, 746, 1386, 1419
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	4 cut(s)	438, 456, 1209, 1425
Tru9I	TTAA	4 cut(s)	438, 456, 1209, 1425
TscAI	CASTG	3 cut(s)	96, 873, 931
TseFI	GTSAC	3 cut(s)	119, 348, 1075
TseI	GCWGC	3 cut(s)	141, 655, 1088
Tsp45I	GTSAC	3 cut(s)	119, 348, 1075
TspDTI	ATGAA	7 cut(s)	17, 123, 382, 458, 504, 844, 1265
TspGWI	ACGGA	1 cut(s)	1224
TspRI	CASTG	3 cut(s)	96, 873, 931
Van91I	CCANNNNNTGG	1 cut(s)	888
VpaK11BI	GGWCC	4 cut(s)	26, 275, 1232, 1415
VspI	ATTAAT	1 cut(s)	438
XceI	RCATGY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1369
XmiI	GTMKAC	2 cut(s)	594, 783
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.