Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008193

Physical Location & Seq

Genomic Coordinates Forward (+)

49056401 .. 49065918

Gene Structure 9518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG292700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3096 bp

ATGCAGAACCGGCATCCAACACGGCAGTCAGTGCCGAAAGTGTGCAGAGTTTGTGGAGATGATATAGGATACAAAGAAGATGGGGAGTTGTTCGTGGCATGTCATGTGTGTGGCTTCCCAGTTTGTAGGCCTTGTTATGATTATGAGAGGAGTGAAGGCACCCAGTGTTGCCCTCAGTGCAACACTCGCTATAAGCGTCACAAAGGTTGTCCTAGAGTTGCTGGAGACGACGAAGATTTTGATGCAGATGATTTTGATGAGGAATTTCAGATTGTTAAGAATCACAATGATCATGACTCTGCTGATGAGAAAAATCATGCCATTCATATTCCTTCGGAGAATGGAGACCATAATCAACAGAAATGGCAAACCAATAATCAACCTTTCTCTGTTCAAGGAAGTGTTAAGGATTTTGAAGGAGACAAAGACGTTTTGGGTAGTGCAGAGTGGAAAGAAAGAGTGGAGAAGTGGAAAGTGAGGCAAGAAAAGAGAGGCTTGGTGAACAAGGATGATGGAAATGATGATGATCAAGGCCTAGAAGATGACTTCCTAATGGCTGAAGCTCGGCAACCACTATGGCGAAAAGTCCCCATCCCCTCGAGTAAAATCAGCCCTTACCGCATAGTCATTGTCATCCGGCTTGTGATTCTGGCCTTCTTTTTCCATTTCCGTATCTTAACTCCAGCCTATGATGCTTTTCCCTTGTGGCTCATATCTGTGATTTGTGAGATATGGTTTGCTCTCTCATGGATACTTGACCAGTTCCCTAAATGGCAACCCATCAACCGGGAAACTTACTTGGACCGCCTATCCTTGAGGTTTGAGCGTGAGGGTGAGCCTAACACCCTAGCTCCAGTTGATGTCTATGTGAGTTCAGTGGACCCTCTCAAGGAGCCTCCAATCATTACTGCAAACACAGTTTTATCCATTTTATCTGTTGACTACCCGGTTGACAAGGTGTGCTGTTATGTTTCGGATGATGGTGCTTCAATGCTCCTCTTTGATGCACTAGCTGAGACTGCTGAGTTTGCAAGAAGATGGGTGCCATTTTGCAAAAAGCACACCATTGAGCCAAGGGCTCCTGAGTTCTATTTCTCTCAGAAGATTGATTACTTGAAGGACAAGGTTCATCCAAACTTTGTCAAGGAGCGCAGAGCCATGAAGAGAGAGTATGAAGAATTCAAAGTGAGGATTAATGCAATGGTAGCAAATGCTCTGAAGAAACCTGAAGACGGGTGGGTGATGCAGGATGGTACTCCATGGCCTGGAAACAACACTCGTGATCATCCTGGAATGATTCAGGTTTATCTGGGAAGTGAAGGAGCACTGGATGTGGATGGTAAGGAACTGCCACGTCTTGTGTATGTTTCACGCGAGAAACGTCCTGGATATCAACATCACAAGAAAGCTGGTGCCATGAATGCTATGGTTCGAGTTTCTGCAGTGCTTTCTAATGCACCTTTCATGTTGAATCTGGATTGTGACCACTACATCAACAACAGTAGGGCTATAAGAGAAGCTATGTGCTTCCTTATGGATCCCCAGCTTGGAAAGAAGCTCTGCTATGTCCAATTCCCTCAAAGGTTTGATGGTATTGATCTTCATGACAGATATGCTAATCGGAATATTGTGTTCTTTGATATCAACATGAAAGGCCTAGATGGCATTCAAGGACCGGTATATGTTGGCACAGGATGTGTCTTCAACAGGCCGGCATTGTATGGCTATGATCCGCCAGTGTCAGAAAAGCAACCGAAGATGACATGTGACTGCTGGCCTTCATGGTGCTGCTGTGGATGCTGTCGTGGGGGTTCGAAGAAGTCCAAGTCTAAGAAGGGTGGAGTAAGAAGTCTTCTTGGGGGACTTTACTCGAAGAAGAAGAAGAAAATGATGGGGAAGAACTATGTGAGGAAAGGGAGGGGACCAATGTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTATGATGAGTTGGAGAAATCATCTCTCATGTCACAGAAAAACTTCGAGAAACGATTTGGACAGTCCCCGGTTTTCATTGCTTCCACTCTCATGGAAAATGGTGGGCTACCTGAAGGGATTAATAGCACAGCACTTGTTAAGGAGGCCATTCATGTTATAAGTTGTGGCTATGAAGAAAAAACTGAATGGGGAAAAGAGATTGGTTGGATTTATGGTTCAGTTACAGAAGATATTTTGACTGGCTTCAAAATGCATTGTAGAGGATGGAAGTCAGTCTACTGTGTGCCAAAAAGACCAGCTTTCAAGGGATCTGCTCCTATCAATTTGTCAGATCGGCTGCACCAAGTTTTGAGATGGGCTCTTGGCTCTGTTGAAATCTTCCTCAGCCGTCATTGTCCCTTATGGTATGCCTGGGGAGGAAAGCTGAAATTGCTGGAGAGACTAGCTTACATCAACACCATAGTCTACCCTTTCACTTCCATCCCCTTACTTGCCTATTGTACCATTCCAGCTGTTTGTCTTTTGACTGGAAAGTTCATCATCCCCACACTGAACAACTTTGCCAGTATATGGTTCTTGGCTCTTTTCCTCTCCATCATTGCAACCAGTGTGTTAGAGCTCAGATGGAGCGGTGTTAGCATCGAAGACTTGTGGCGTAATGAGCAGTTTTGGGTGATCGGTGGTGTCTCTGCACATCTGTTTGCAGTCTTCCAAGGCCTCCTCAAAGTCCTTGCTGGAGTTGACACCAACTTTACAGTCACATCAAAAGCAGCAGATGATGCTGAGTTTGGGGAACTCTACCTGTTCAAATGGACTACACTACTCATCCCACCAACGACCCTTATCATCTTGAACATGGTGGGAGTAGTTGCTGGAGTTTCTGATGCCATTAACAATGGCTACGGCTCATGGGGTCCGTTGTTCGGAAAGCTCTTCTTTGCCTTCTGGGTCATTGTTCATCTGTACCCTTTCCTCAAAGGTTTGATGGGAAGGCAAAACAGGACTCCTACCATTGTGGTACTTTGGTCAGTTCTTCTTGCCTCCATCTTCTCATTGGTTTGGGTAAGAATTGATCCCTTCTTGGCTAAGCAAACTGGACCAATTCTTAAACAATGTGGGGTGGACTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0050832 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0051704 GO:0051707 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098542 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

1031

Amino Acids

117.23

Weight (kDa)

7.62

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UDP	PF14569	6 - 80	5.7e-37	Zinc-binding RING-finger
Cellulose_synt	PF03552	286 - 1023	0.0	Cellulose synthase
Glyco_trans_2_3	PF13632	721 - 826	8e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G44030 AT5G44030 AT5G44030
fragaria_vesca	FvH4_2g20740
malus_domestica	MD00G1061100.v1.1 MD05G1189500.v1.1 MD05G1189600.v1.1 MD05G1189700.v1.1
prunus_persica	Prupe.8G216900_v2.0.a1
pyrus_communis	pycom05g17480 pycom10g15390
rosa_chinensis	RchiOBHm_Chr6g0286921
rosa_laevigata	RLG00000012526
rosa_multiflora	Rmu_sc0002520.1_g000012 Rmu_sc0023638.1_g000001 Rmu_sc0042599.1_g000001
rosa_roxburghii	Rroxscaffold_7G00181800
rosa_rugosa	Rorug06G0185100
rosa_samantha	Rh6AG296900 Rh6BG301400 Rh6CG308900 Rh6DG292700
rosa_wichuraiana	Rw6G025610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2123
AccB1I	GGYRCC	3 cut(s)	158, 1042, 1412
AccB7I	CCANNNNNTGG	2 cut(s)	1265, 2535
AccBSI	CCGCTC	1 cut(s)	2595
AccI	GTMKAC	2 cut(s)	2241, 2430
AccII	CGCG	1 cut(s)	1374
AciI	CCGC	4 cut(s)	619, 805, 1733, 2595
AclWI	GGATC	5 cut(s)	1532, 1545, 1724, 2281, 3032
AcsI	RAATTY	2 cut(s)	263, 1178
AcuI	CTGAAG	4 cut(s)	579, 1238, 1248, 2097
AdeI	CACNNNGTG	1 cut(s)	165
AfaI	GTAC	4 cut(s)	1255, 2467, 2930, 2985
AfiI	CCNNNNNNNGG	7 cut(s)	786, 889, 1232, 1265, 1547, 2535, 2888
AflIII	ACRYGT	1 cut(s)	1763
AgeI	ACCGGT	1 cut(s)	1675
AjiI	CACGTC	1 cut(s)	1355
AjnI	CCWGG	4 cut(s)	1264, 1288, 1384, 2375
AloI	GAACNNNNNNTCC	2 cut(s)	2164, 2196
Alw21I	GWGCWC	2 cut(s)	1327, 2586
Alw26I	GTCTC	6 cut(s)	219, 339, 414, 1010, 2398, 2656
AlwI	GGATC	5 cut(s)	1532, 1545, 1724, 2281, 3032
Ama87I	CYCGRG	1 cut(s)	598
AoxI	GGCC	9 cut(s)	128, 532, 651, 1262, 1654, 1709, 1775, 2109, 2680
ApeKI	GCWGC	3 cut(s)	1788, 2302, 2735
ApoI	RAATTY	2 cut(s)	263, 1178
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AseI	ATTAAT	2 cut(s)	1194, 2085
AsiGI	ACCGGT	1 cut(s)	1675
Asp700I	GAANNNNTTC	1 cut(s)	2006
AspLEI	GCGC	1 cut(s)	1152
AspS9I	GGNCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
AsuC2I	CCSGG	3 cut(s)	788, 947, 2033
AsuHPI	GGTGA	4 cut(s)	511, 845, 1252, 2650
AsuII	TTCGAA	1 cut(s)	1814
AvaI	CYCGRG	1 cut(s)	598
AvaII	GGWCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
BaeI	ACNNNNGTAYC	2 cut(s)	2975, 3008
BamHI	GGATCC	1 cut(s)	1537
BanI	GGYRCC	3 cut(s)	158, 1042, 1412
BanII	GRGCYC	3 cut(s)	1081, 2326, 2586
BarI	GAAGNNNNNNTAC	6 cut(s)	1094, 1126, 1836, 1868, 2225, 2257
BauI	CACGAG	1 cut(s)	1278
BbsI	GAAGAC	5 cut(s)	1236, 1693, 1844, 2616, 2665
Bbv12I	GWGCWC	2 cut(s)	1327, 2586
BbvCI	CCTCAGC	1 cut(s)	2348
BbvI	GCAGC	3 cut(s)	1775, 2289, 2747
BceAI	ACGGC	3 cut(s)	38, 2337, 2884
BciT130I	CCWGG	4 cut(s)	1266, 1290, 1386, 2377
BciVI	GTATCC	2 cut(s)	62, 744
BclI	TGATCA	3 cut(s)	289, 526, 1282
BcnI	CCSGG	3 cut(s)	788, 947, 2033
BcoDI	GTCTC	6 cut(s)	219, 339, 414, 1010, 2398, 2656
BfaI	CTAG	6 cut(s)	213, 536, 848, 1010, 1658, 2408
BfmI	CTRYAG	1 cut(s)	1440
BfuI	GTATCC	2 cut(s)	62, 744
BglI	GCCNNNNNGGC	1 cut(s)	1662
BisI	GCNGC	3 cut(s)	1789, 2303, 2736
BlpI	GCTNAGC	1 cut(s)	3051
BlsI	GCNGC	3 cut(s)	1790, 2304, 2737
Bme1390I	CCNGG	7 cut(s)	788, 947, 1266, 1290, 1386, 2033, 2377
Bme18I	GGWCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
BmeT110I	CYCGRG	1 cut(s)	598
BmgBI	CACGTC	1 cut(s)	1355
BmgT120I	GGNCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
BmiI	GGNNCC	9 cut(s)	160, 882, 894, 1044, 1080, 1414, 1539, 1923, 2880
BmrFI	CCNGG	7 cut(s)	788, 947, 1266, 1290, 1386, 2033, 2377
BmrI	ACTGGG	2 cut(s)	113, 157
BmsI	GCATC	9 cut(s)	22, 232, 682, 994, 1233, 1787, 2613, 2734, 2839
BmuI	ACTGGG	2 cut(s)	113, 157
BpiI	GAAGAC	5 cut(s)	1236, 1693, 1844, 2616, 2665
BplI	GAGNNNNNCTC	2 cut(s)	2308, 2340
BpmI	CTGGAG	6 cut(s)	243, 666, 837, 2420, 2721, 2859
Bpu10I	CCTNAGC	1 cut(s)	2348
Bpu1102I	GCTNAGC	1 cut(s)	3051
Bpu14I	TTCGAA	1 cut(s)	1814
BpuEI	CTTGAG	2 cut(s)	835, 872
BpuMI	CCSGG	3 cut(s)	788, 947, 2033
BsaBI	GATNNNNATC	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	5 cut(s)	1073, 1259, 2031, 2376, 2677
BsaWI	WCCGGW	1 cut(s)	1675
BsaXI	ACNNNNNCTCC	2 cut(s)	835, 865
Bsc4I	CCNNNNNNNGG	7 cut(s)	786, 889, 1232, 1265, 1547, 2535, 2888
Bse118I	RCCGGY	3 cut(s)	9, 1675, 1711
Bse3DI	GCAATG	3 cut(s)	1206, 2040, 2562
Bse8I	GATNNNNATC	1 cut(s)	525
BseBI	CCWGG	4 cut(s)	1266, 1290, 1386, 2377
BseDI	CCNNGG	5 cut(s)	1073, 1259, 2031, 2376, 2677
BseJI	GATNNNNATC	1 cut(s)	525
BseLI	CCNNNNNNNGG	7 cut(s)	786, 889, 1232, 1265, 1547, 2535, 2888
BseMI	GCAATG	3 cut(s)	1206, 2040, 2562
BseMII	CTCAG	8 cut(s)	188, 1005, 1014, 1074, 1112, 2362, 2599, 2739
BseRI	GAGGAG	3 cut(s)	163, 986, 2675
BseXI	GCAGC	3 cut(s)	1775, 2289, 2747
BseYI	CCCAGC	1 cut(s)	1542
BsgI	GTGCAG	4 cut(s)	64, 462, 2288, 2640
Bsh1236I	CGCG	1 cut(s)	1374
BshFI	GGCC	9 cut(s)	130, 534, 653, 1264, 1656, 1711, 1777, 2111, 2682
BshNI	GGYRCC	3 cut(s)	158, 1042, 1412
BshTI	ACCGGT	1 cut(s)	1675
BsiHKAI	GWGCWC	2 cut(s)	1327, 2586
BsiHKCI	CYCGRG	1 cut(s)	598
BsiSI	CCGG	7 cut(s)	10, 637, 787, 947, 1676, 1712, 2033
BslFI	GGGAC	5 cut(s)	572, 1875, 1935, 2014, 2346
BslI	CCNNNNNNNGG	7 cut(s)	786, 889, 1232, 1265, 1547, 2535, 2888
BsmAI	GTCTC	6 cut(s)	219, 339, 414, 1010, 2398, 2656
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	5 cut(s)	572, 1875, 1935, 2014, 2346
BsmI	GAATGC	2 cut(s)	1426, 1665
BsnI	GGCC	9 cut(s)	130, 534, 653, 1264, 1656, 1711, 1777, 2111, 2682
Bso31I	GGTCTC	1 cut(s)	339
BsoBI	CYCGRG	1 cut(s)	598
Bsp119I	TTCGAA	1 cut(s)	1814
Bsp1286I	GDGCHC	4 cut(s)	1081, 1327, 2326, 2586
Bsp1720I	GCTNAGC	1 cut(s)	3051
Bsp19I	CCATGG	1 cut(s)	1259
BspACI	CCGC	4 cut(s)	619, 805, 1733, 2595
BspANI	GGCC	9 cut(s)	130, 534, 653, 1264, 1656, 1711, 1777, 2111, 2682
BspCNI	CTCAG	8 cut(s)	187, 1006, 1015, 1075, 1111, 2361, 2598, 2740
BspFNI	CGCG	1 cut(s)	1374
BspHI	TCATGA	2 cut(s)	292, 1603
BspLI	GGNNCC	9 cut(s)	160, 882, 894, 1044, 1080, 1414, 1539, 1923, 2880
BspMAI	CTGCAG	1 cut(s)	1444
BspPI	GGATC	5 cut(s)	1532, 1545, 1724, 2281, 3032
BspQI	GCTCTTC	1 cut(s)	2903
BspT104I	TTCGAA	1 cut(s)	1814
BspT107I	GGYRCC	3 cut(s)	158, 1042, 1412
BspTNI	GGTCTC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	2595
BsrDI	GCAATG	3 cut(s)	1206, 2040, 2562
BsrFI	RCCGGY	3 cut(s)	9, 1675, 1711
BssAI	RCCGGY	3 cut(s)	9, 1675, 1711
BssECI	CCNNGG	5 cut(s)	1073, 1259, 2031, 2376, 2677
BssSI	CACGAG	1 cut(s)	1278
BssT1I	CCWWGG	3 cut(s)	1073, 1259, 2677
Bst2BI	CACGAG	1 cut(s)	1278
Bst2UI	CCWGG	4 cut(s)	1266, 1290, 1386, 2377
Bst4CI	ACNGT	5 cut(s)	919, 1502, 2028, 2246, 2722
Bst6I	CTCTTC	3 cut(s)	1157, 1935, 2903
BstAPI	GCANNNNNTGC	2 cut(s)	31, 2744
BstBI	TTCGAA	1 cut(s)	1814
BstC8I	GCNNGC	2 cut(s)	1713, 1775
BstDSI	CCRYGG	1 cut(s)	1259
BstFNI	CGCG	1 cut(s)	1374
BstHHI	GCGC	1 cut(s)	1152
BstMAI	GTCTC	6 cut(s)	219, 339, 414, 1010, 2398, 2656
BstNI	CCWGG	4 cut(s)	1266, 1290, 1386, 2377
BstNSI	RCATGY	2 cut(s)	102, 1767
BstSCI	CCNGG	7 cut(s)	786, 945, 1264, 1288, 1384, 2031, 2375
BstSFI	CTRYAG	1 cut(s)	1440
BstUI	CGCG	1 cut(s)	1374
BstV1I	GCAGC	3 cut(s)	1775, 2289, 2747
BstV2I	GAAGAC	5 cut(s)	1236, 1693, 1844, 2616, 2665
BstX2I	RGATCY	2 cut(s)	1537, 2273
BstXI	CCANNNNNNTGG	1 cut(s)	2056
BstYI	RGATCY	2 cut(s)	1537, 2273
BsuI	GTATCC	2 cut(s)	62, 744
BsuRI	GGCC	9 cut(s)	130, 534, 653, 1264, 1656, 1711, 1777, 2111, 2682
BtgI	CCRYGG	1 cut(s)	1259
BtrI	CACGTC	1 cut(s)	1355
BtsI	GCAGTG	1 cut(s)	1449
BtsIMutI	CAGTG	9 cut(s)	36, 170, 182, 882, 1325, 1449, 1743, 2513, 2578
Cac8I	GCNNGC	2 cut(s)	1713, 1775
CciI	TCATGA	2 cut(s)	292, 1603
CfoI	GCGC	1 cut(s)	1152
Cfr10I	RCCGGY	3 cut(s)	9, 1675, 1711
Cfr13I	GGNCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	1254, 2466, 2929, 2984
CspAI	ACCGGT	1 cut(s)	1675
CviQI	GTAC	4 cut(s)	1254, 2466, 2929, 2984
DraIII	CACNNNGTG	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	1157, 1935, 2903
EarI	CTCTTC	3 cut(s)	1157, 1935, 2903
EciI	GGCGGA	1 cut(s)	1722
Ecl136II	GAGCTC	1 cut(s)	2584
Eco130I	CCWWGG	3 cut(s)	1073, 1259, 2677
Eco147I	AGGCCT	4 cut(s)	130, 534, 1656, 2682
Eco24I	GRGCYC	3 cut(s)	1081, 2326, 2586
Eco31I	GGTCTC	1 cut(s)	339
Eco32I	GATATC	2 cut(s)	1391, 1642
Eco47I	GGWCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
Eco53kI	GAGCTC	1 cut(s)	2584
Eco57I	CTGAAG	4 cut(s)	579, 1238, 1248, 2097
Eco88I	CYCGRG	1 cut(s)	598
EcoICRI	GAGCTC	1 cut(s)	2584
EcoRI	GAATTC	1 cut(s)	1178
EcoRII	CCWGG	4 cut(s)	1264, 1288, 1384, 2375
EcoRV	GATATC	2 cut(s)	1391, 1642
EcoT14I	CCWWGG	3 cut(s)	1073, 1259, 2677
EcoT22I	ATGCAT	1 cut(s)	2220
EcoT38I	GRGCYC	3 cut(s)	1081, 2326, 2586
ErhI	CCWWGG	3 cut(s)	1073, 1259, 2677
Esp3I	CGTCTC	1 cut(s)	219
FalI	AAGNNNNNCTT	6 cut(s)	479, 511, 2248, 2280, 2885, 2917
FaqI	GGGAC	5 cut(s)	572, 1875, 1935, 2014, 2346
FbaI	TGATCA	3 cut(s)	289, 526, 1282
FblI	GTMKAC	2 cut(s)	2241, 2430
Fnu4HI	GCNGC	3 cut(s)	1789, 2303, 2736
FriOI	GRGCYC	3 cut(s)	1081, 2326, 2586
Fsp4HI	GCNGC	3 cut(s)	1789, 2303, 2736
FspBI	CTAG	6 cut(s)	213, 536, 848, 1010, 1658, 2408
GlaI	GCGC	1 cut(s)	1151
GluI	GCNGC	3 cut(s)	1789, 2303, 2736
GsaI	CCCAGC	1 cut(s)	1546
GsuI	CTGGAG	6 cut(s)	243, 666, 837, 2420, 2721, 2859
HaeIII	GGCC	9 cut(s)	130, 534, 653, 1264, 1656, 1711, 1777, 2111, 2682
HapII	CCGG	7 cut(s)	10, 637, 787, 947, 1676, 1712, 2033
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	1152
Hin6I	GCGC	1 cut(s)	1150
HinP1I	GCGC	1 cut(s)	1150
HincII	GTYRAC	3 cut(s)	940, 952, 2707
HindII	GTYRAC	3 cut(s)	940, 952, 2707
HinfI	GANTC	6 cut(s)	280, 296, 646, 1297, 1471, 2968
HpaII	CCGG	7 cut(s)	10, 637, 787, 947, 1676, 1712, 2033
HphI	GGTGA	4 cut(s)	511, 845, 1252, 2650
Hpy166II	GTNNAC	8 cut(s)	502, 880, 940, 952, 2242, 2431, 2707, 3088
Hpy188III	TCNNGA	8 cut(s)	293, 1082, 1280, 1475, 1604, 1937, 2011, 2815
Hpy8I	GTNNAC	8 cut(s)	502, 880, 940, 952, 2242, 2431, 2707, 3088
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4III	ACNGT	5 cut(s)	919, 1502, 2028, 2246, 2722
HpyCH4IV	ACGT	3 cut(s)	429, 1354, 1381
HpySE526I	ACGT	3 cut(s)	429, 1354, 1381
HspAI	GCGC	1 cut(s)	1150
KroI	GCCGGC	1 cut(s)	1711
KroNI	GCCGGC	1 cut(s)	1713
Ksp22I	TGATCA	3 cut(s)	289, 526, 1282
LguI	GCTCTTC	1 cut(s)	2903
LmnI	GCTCC	8 cut(s)	856, 892, 999, 1084, 1147, 1322, 2284, 2592
Lsp1109I	GCAGC	3 cut(s)	1775, 2289, 2747
LweI	GCATC	9 cut(s)	22, 232, 682, 994, 1233, 1787, 2613, 2734, 2839
MaeI	CTAG	6 cut(s)	213, 536, 848, 1010, 1658, 2408
MaeII	ACGT	3 cut(s)	429, 1354, 1381
MaeIII	GTNAC	6 cut(s)	197, 1481, 1766, 1995, 2185, 2722
MbiI	CCGCTC	1 cut(s)	2595
MflI	RGATCY	2 cut(s)	1537, 2273
MhlI	GDGCHC	4 cut(s)	1081, 1327, 2326, 2586
MluCI	AATT	7 cut(s)	263, 1178, 1571, 2287, 2393, 3033, 3066
MlyI	GAGTC	2 cut(s)	290, 2962
MmeI	TCCRAC	3 cut(s)	41, 1956, 2150
Mph1103I	ATGCAT	1 cut(s)	2220
MroNI	GCCGGC	1 cut(s)	1711
MroXI	GAANNNNTTC	1 cut(s)	2006
MseI	TTAA	8 cut(s)	276, 405, 677, 1194, 2085, 2103, 2856, 3072
MslI	CAYNNNNRTG	3 cut(s)	108, 716, 2054
MspA1I	CMGCKG	1 cut(s)	2477
MspI	CCGG	7 cut(s)	10, 637, 787, 947, 1676, 1712, 2033
MspR9I	CCNGG	7 cut(s)	788, 947, 1266, 1290, 1386, 2033, 2377
Mva1269I	GAATGC	2 cut(s)	1426, 1665
MvaI	CCWGG	4 cut(s)	1266, 1290, 1386, 2377
MvnI	CGCG	1 cut(s)	1374
NaeI	GCCGGC	1 cut(s)	1713
NciI	CCSGG	3 cut(s)	788, 947, 2033
NcoI	CCATGG	1 cut(s)	1259
NgoMIV	GCCGGC	1 cut(s)	1711
NlaIV	GGNNCC	9 cut(s)	160, 882, 894, 1044, 1080, 1414, 1539, 1923, 2880
NmeAIII	GCCGAG	1 cut(s)	544
NmuCI	GTSAC	5 cut(s)	197, 1481, 1766, 1995, 2722
NsiI	ATGCAT	1 cut(s)	2220
NspI	RCATGY	2 cut(s)	102, 1767
NspV	TTCGAA	1 cut(s)	1814
PaeR7I	CTCGAG	1 cut(s)	598
PagI	TCATGA	2 cut(s)	292, 1603
PceI	AGGCCT	4 cut(s)	130, 534, 1656, 2682
PciI	ACATGT	1 cut(s)	1763
PciSI	GCTCTTC	1 cut(s)	2903
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 1378
PctI	GAATGC	2 cut(s)	1426, 1665
PdiI	GCCGGC	1 cut(s)	1713
PdmI	GAANNNNTTC	1 cut(s)	2006
PfeI	GAWTC	4 cut(s)	280, 646, 1297, 1471
PflMI	CCANNNNNTGG	2 cut(s)	1265, 2535
PfoI	TCCNGGA	2 cut(s)	1288, 1384
PinAI	ACCGGT	1 cut(s)	1675
PkrI	GCNGC	3 cut(s)	1790, 2304, 2737
PleI	GAGTC	2 cut(s)	290, 2962
PpsI	GAGTC	2 cut(s)	290, 2962
PscI	ACATGT	1 cut(s)	1763
PshBI	ATTAAT	2 cut(s)	1194, 2085
PsiI	TTATAA	1 cut(s)	2123
Psp124BI	GAGCTC	1 cut(s)	2586
Psp6I	CCWGG	4 cut(s)	1264, 1288, 1384, 2375
PspFI	CCCAGC	1 cut(s)	1542
PspGI	CCWGG	4 cut(s)	1264, 1288, 1384, 2375
PspN4I	GGNNCC	9 cut(s)	160, 882, 894, 1044, 1080, 1414, 1539, 1923, 2880
PspPI	GGNCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
PspXI	VCTCGAGB	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	1444
PsuI	RGATCY	2 cut(s)	1537, 2273
PvuII	CAGCTG	1 cut(s)	2477
RsaI	GTAC	4 cut(s)	1255, 2467, 2930, 2985
RsaNI	GTAC	4 cut(s)	1254, 2466, 2929, 2984
RseI	CAYNNNNRTG	3 cut(s)	108, 716, 2054
SacI	GAGCTC	1 cut(s)	2586
SapI	GCTCTTC	1 cut(s)	2903
SaqAI	TTAA	8 cut(s)	276, 405, 677, 1194, 2085, 2103, 2856, 3072
SatI	GCNGC	3 cut(s)	1789, 2303, 2736
Sau96I	GGNCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
SchI	GAGTC	2 cut(s)	290, 2962
ScrFI	CCNGG	7 cut(s)	788, 947, 1266, 1290, 1386, 2033, 2377
SduI	GDGCHC	4 cut(s)	1081, 1327, 2326, 2586
SfaNI	GCATC	9 cut(s)	22, 232, 682, 994, 1233, 1787, 2613, 2734, 2839
SfcI	CTRYAG	1 cut(s)	1440
Sfr274I	CTCGAG	1 cut(s)	598
SfuI	TTCGAA	1 cut(s)	1814
SinI	GGWCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
SlaI	CTCGAG	1 cut(s)	598
SmiMI	CAYNNNNRTG	3 cut(s)	108, 716, 2054
SmlI	CTYRAG	3 cut(s)	598, 814, 887
SmoI	CTYRAG	3 cut(s)	598, 814, 887
Sse9I	AATT	7 cut(s)	263, 1178, 1571, 2287, 2393, 3033, 3066
SseBI	AGGCCT	4 cut(s)	130, 534, 1656, 2682
SsiI	CCGC	4 cut(s)	619, 805, 1733, 2595
SspI	AATATT	1 cut(s)	1627
SspMI	CTAG	6 cut(s)	213, 536, 848, 1010, 1658, 2408
SstI	GAGCTC	1 cut(s)	2586
StuI	AGGCCT	4 cut(s)	130, 534, 1656, 2682
StyD4I	CCNGG	7 cut(s)	786, 945, 1264, 1288, 1384, 2031, 2375
StyI	CCWWGG	3 cut(s)	1073, 1259, 2677
TaaI	ACNGT	5 cut(s)	919, 1502, 2028, 2246, 2722
TaiI	ACGT	3 cut(s)	432, 1357, 1384
TaqI	TCGA	6 cut(s)	599, 1432, 1814, 1871, 2010, 2607
TasI	AATT	7 cut(s)	263, 1178, 1571, 2287, 2393, 3033, 3066
TfiI	GAWTC	4 cut(s)	280, 646, 1297, 1471
Tru1I	TTAA	8 cut(s)	276, 405, 677, 1194, 2085, 2103, 2856, 3072
Tru9I	TTAA	8 cut(s)	276, 405, 677, 1194, 2085, 2103, 2856, 3072
TscAI	CASTG	9 cut(s)	36, 170, 182, 882, 1332, 1449, 1743, 2520, 2578
TseFI	GTSAC	5 cut(s)	197, 1481, 1766, 1995, 2722
TseI	GCWGC	3 cut(s)	1788, 2302, 2735
Tsp45I	GTSAC	5 cut(s)	197, 1481, 1766, 1995, 2722
TspGWI	ACGGA	2 cut(s)	659, 2871
TspRI	CASTG	9 cut(s)	36, 170, 182, 882, 1332, 1449, 1743, 2520, 2578
Van91I	CCANNNNNTGG	2 cut(s)	1265, 2535
VpaK11BI	GGWCC	6 cut(s)	802, 880, 1673, 1922, 2879, 3062
VspI	ATTAAT	2 cut(s)	1194, 2085
XapI	RAATTY	2 cut(s)	263, 1178
XceI	RCATGY	2 cut(s)	102, 1767
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1423, 3016
XhoI	CTCGAG	1 cut(s)	598
XmiI	GTMKAC	2 cut(s)	2241, 2430
XmnI	GAANNNNTTC	1 cut(s)	2006
XspI	CTAG	6 cut(s)	213, 536, 848, 1010, 1658, 2408
Zsp2I	ATGCAT	1 cut(s)	2220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.