Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005444

Physical Location & Seq

Genomic Coordinates Reverse (-)

33592452 .. 33599544

Gene Structure 7093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1206800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3018 bp

ATGCTTGAGCCAAGGGAAGCTGATATACCGGTCCTGTTTCTGGTTTTCGTTGTACTCCCTTTGGTTGCTTACGTTTTACTTGGAAAATGGAGTGATTCATCAAAGAAGAGAGACAGGGTAAGTTTGCTTGCTCAACTGGCTGCAGAAGAAGCTCTCAGAGCAGAAGCAATGGCTGTTGCTGCTGTTATTCCTCCTGTGTCTTCCTCAAGTCCTTCAAAGAATGGACTTCAAGTATGTGCCAGATGCTATAGTACAGCTACAACCCGCTGCTCTAGATGCAAATCTGTCAGATATTGTTCTGGTAATTGTCAAATAATTCATTGGAGGGAAGTTCACAGGCAAGAATGTCTGCAGTTGGAACCTACTTGTTCAAGCTCATCTCCTAAGGCTGTCTCATTTGGAGAATCATTTCACGAGAAGTTCTTACCTAATGACAGCATCAATTCACAGTACTTTGGGAGTAAGATGGAGCAGATTTTAGCAGAGCAAGCACCAGCTGATAATATAATTTATCCTTCAACAAGCACTGGTGTCCCTGATATGCTTGACTGTTCTTCGGTTGATACCTCTCAAGTTTCCATGCCGGAGAGAAGAAGTGTGGACAAACGGGTTTCCAGAAAATCCCAGAGAGAATTAAGAAAAAAAGTTGGAGTTGCATTTGATTCTTCTGAAGAAACATCTTTTGGTTGGACTACCCATTTGGAATCTTCTAATGTTAATTCATCAAAAGAGTTAAGAAATTATGACACTCAGTTAGCAGGGGAGGGCAATCCTATGGTGCAAAATGTCAATATTTCTGATAGTTATATGAAGGGACAAGCTACTTCAAGAAATACGGTGCATGAGAATGATAAGTCTCAAGGTCAAAATGGCAACATATATGAATCAAGAAGCAACTCTGGATTAACATCCTCGGCATATTCTTCAAAAAGTGGAATAGATGTGCATGAAAATGGGTTGGACTTCATTCCAAATGGAGGAAAATCCCTTAAAGGGGAAATATTATCCAATGATGAAACAACAGATTTCAAATGTGCTGAAATGACAACAATGAAGGCTAGCATAAAGGTTAAAAGAGCTCCGTATTCTCTTGGGAGAAAGGTGTCTAAATTGCCAAATTCAACAATGGAAGTCTCAGGAGAGCAGTGTTACTCAGAGATAGAGAGGCAGGGACATATTGCTGAAGATTCAAAAGTAACTAGAATGAGAGATACCACTGCACAGGGTAGCAATGGAATTGCAAACAGTAGGATCATGAAAATGATGGATCTAAAGAAGCCAAAGAACTTGACCAGACAGGAAGTCCCCGAAGTGAATGGTTACCGACAGAAAACTAAGAAGGTCCTGTTCCCTTATGATGAGTTTGTGAAGTACTTTCAGTGTGAATTCTTTGACTTATCACCTCGGGGCCTTTTGAATTGTGGGAACAGTTGCTATGCAAATGCTGTCTTGCAGTGTTTAACCTGCACAAAGCCTCTCATTATCTATTTGCTTCGCAGATCACATTCAAGAGCCTGTTGTGGTAAAGATTGGTGTCTCATGTGTGAGCTGGAGCAACATGTGATGATGTTACGAGAAAGTGGGGGCCCACTTTCTCCTAGCCGAATTCTTTTTCATATGAGGAGTATCAATTGCCAAATTGGTGATGGAAGTCAAGAAGATGCACATGAATTCTTAAGGCTTCTAGTTACGTCAATGCAATCTATATGCTTGGAGGGGCTGGGTGGTGAAAACAAGGTTGATCCTAGATTGCAAGAAACAACTTTTATACAACATACATTTGGCGGACATCTCAGATCAAAGGTCAAGTGTTTGAGATGTCATCATGAGTCGGAACGATATGAGAACATCATGGATCTTACCTTAGAGATATTTGGTTGGGTTGAATCACTTGAAGATGCGCTGACTCAGTTTACAACCCCTGAAGATTTGGATGGAGAAAACATGTACAGATGTGGAAGGTGTGCTGCATATGTTCGAGCCAGGAAGCAATTGAGCATACATGAGGCGCCAAATATACTCACAATTGTCTTGAAGAGATTTCAGGAGGGAAAATATGGAAAAATAAACAAGTGCATCACTTTTCCAGACATGCTGGATATGATTCCATTTATGACTGGAACGGGTGACATTCCTCCTCTTTACTTGCTCTATGGTGTTGTGGTGCATTTGGATACGCAGAATGCATCTTTCTCTGGACATTATGTGGCATATGTGAAAGATATGCGAGGCGATTGGTTCAGGATAGATGACACTGAGGTTCACCCCGTTTCAATGAGCCAGGTTATGATGGAAGGAGCATATATCTTATTTTACATGAGGTCTTGTCCCCGCCCTCACAGAGGATTTTCTGGAAAAGCTATCAGGGAGCAAGTTCCAAATTTCGAAAATCAATGCACGTCGAAAGCTCAGAAGTCAAGGCCAGGCCAAAGCAAACACAGCAGCCAATTTGCTAGTCCAGAGCATTTACCAGATGATATCAGGCCAGAGATTGCAAATGGCTTTGGCAACAGCACCACCAATGACATCCATAGGAGTTCTAACGGGAATGTTTTCCCAATGATGGAAACATATGGTGAGCCCATGGGCGTGGAGTTCTCTGATGCTACGTCAAGTGATTGGTCCCTTTTTACAAGTTCTGATGAGGCCTCTTTCACGACTGAGAGTACTAGAGACTCTTTCAGTACTGTGGATTGTGCCGATGCTTGCAATATGGATCCAATCTCTTCAATTTTCAACACGTTATATGCACCGGAGTATTCTCGCAGTTCTGCATCCTGCAGAAAATTTTCAAATAGTAGGCCACACACTAGATTTGTTTCCAAGGATAAGGGTGTTATTTTGGATTCGTACTCATCAACCCATCCCGTTGACAGAGCACAGAAACGAAACTATTCAAGAAAGGTCAGTGATTCACAAACTGAACACCCTCTGGATACTAAATGCAGCTCGTTTGTAAGATATGGGACTAACCCAATATATAGTCTTGACCGAACCTCGGATCATTGTAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

1006

Amino Acids

112.73

Weight (kDa)

6.95

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	79 - 116	6.1e-09	MYND finger
UCH	PF00443	469 - 772	6.9e-52	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	470 - 754	1e-20	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17110 AT1G17110 AT1G17110
fragaria_vesca	FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820
malus_domestica	MD05G1206800.v1.1 MD10G1193900.v1.1
prunus_persica	Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1
pyrus_communis	pycom05g19290 pycom10g16770
rosa_chinensis	RchiOBHm_Chr5g0028031
rosa_laevigata	RLG00000033059
rosa_multiflora	Rmu_sc0009432.1_g000009
rosa_roxburghii	Rroxscaffold_1G00051630
rosa_rugosa	Rorug05G0103600
rosa_samantha	Rh5AG197200 Rh5BG195400 Rh5CG215600 Rh5DG197000
rosa_wichuraiana	Rw5G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1472
AccB1I	GGYRCC	1 cut(s)	2008
AciI	CCGC	3 cut(s)	265, 1785, 2332
AclWI	GGATC	7 cut(s)	1259, 1275, 1736, 1863, 2711, 2724, 3009
AcsI	RAATTY	6 cut(s)	1117, 1385, 1605, 1670, 2380, 2786
AcuI	CTGAAG	3 cut(s)	690, 1203, 1944
AcyI	GRCGYC	1 cut(s)	2009
AfaI	GTAC	8 cut(s)	54, 253, 452, 1373, 1949, 2668, 2686, 2852
AfiI	CCNNNNNNNGG	7 cut(s)	40, 977, 993, 994, 2342, 2563, 2998
AflII	CTTAAG	1 cut(s)	1675
AflIII	ACRYGT	3 cut(s)	1558, 1944, 2739
AgeI	ACCGGT	1 cut(s)	28
AhdI	GACNNNNNGTC	1 cut(s)	1301
AjiI	CACGTC	1 cut(s)	2400
AjnI	CCWGG	3 cut(s)	1982, 2280, 2422
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
Alw21I	GWGCWC	2 cut(s)	1081, 2881
Alw26I	GTCTC	6 cut(s)	105, 397, 861, 1138, 1541, 2667
AlwI	GGATC	7 cut(s)	1259, 1275, 1736, 1863, 2711, 2724, 3009
Ama87I	CYCGRG	1 cut(s)	1404
AoxI	GGCC	7 cut(s)	1408, 1585, 2420, 2425, 2483, 2646, 2801
ApaI	GGGCCC	1 cut(s)	1589
ApeKI	GCWGC	6 cut(s)	140, 179, 267, 1967, 2442, 2946
ApoI	RAATTY	6 cut(s)	1117, 1385, 1605, 1670, 2380, 2786
ArsI	GACNNNNNNTTYG	2 cut(s)	682, 714
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	4 cut(s)	408, 2552, 2788, 2893
AspLEI	GCGC	2 cut(s)	1903, 2011
AspS9I	GGNCC	6 cut(s)	31, 1342, 1408, 1585, 1586, 2622
AsuHPI	GGTGA	6 cut(s)	1392, 1655, 1739, 2138, 2255, 2588
AsuII	TTCGAA	1 cut(s)	2385
AsuNHI	GCTAGC	1 cut(s)	1058
AvaI	CYCGRG	1 cut(s)	1404
AvaII	GGWCC	3 cut(s)	31, 1342, 2622
AxyI	CCTNAGG	1 cut(s)	384
BaeGI	GKGCMC	1 cut(s)	1589
BamHI	GGATCC	1 cut(s)	2716
BanI	GGYRCC	1 cut(s)	2008
BanII	GRGCYC	3 cut(s)	1081, 1589, 2583
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BauI	CACGAG	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	1081, 2881
BbvI	GCAGC	6 cut(s)	127, 166, 254, 1954, 2454, 2958
BccI	CCATC	7 cut(s)	460, 1258, 1640, 1928, 2284, 2557, 2871
BciT130I	CCWGG	3 cut(s)	1984, 2282, 2424
BciVI	GTATCC	2 cut(s)	2167, 2929
BcoDI	GTCTC	6 cut(s)	105, 397, 861, 1138, 1541, 2667
BfaI	CTAG	9 cut(s)	273, 1059, 1200, 1599, 1685, 1746, 2454, 2670, 2811
BfmI	CTRYAG	4 cut(s)	141, 247, 350, 2779
BfoI	RGCGCY	1 cut(s)	2012
BfrI	CTTAAG	1 cut(s)	1675
BfuAI	ACCTGC	1 cut(s)	1472
BfuI	GTATCC	2 cut(s)	2167, 2929
BisI	GCNGC	6 cut(s)	141, 180, 268, 1968, 2443, 2947
BlsI	GCNGC	6 cut(s)	142, 181, 269, 1969, 2444, 2948
BmcAI	AGTACT	4 cut(s)	452, 1373, 2668, 2686
Bme1390I	CCNGG	3 cut(s)	1984, 2282, 2424
Bme18I	GGWCC	3 cut(s)	31, 1342, 2622
BmeRI	GACNNNNNGTC	1 cut(s)	1301
BmeT110I	CYCGRG	1 cut(s)	1404
BmgBI	CACGTC	1 cut(s)	2400
BmgT120I	GGNCC	6 cut(s)	31, 1342, 1408, 1585, 1586, 2622
BmiI	GGNNCC	7 cut(s)	360, 1409, 1586, 1587, 2010, 2624, 2718
BmrFI	CCNGG	3 cut(s)	1984, 2282, 2424
BmtI	GCTAGC	1 cut(s)	1062
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	1571
Bpu14I	TTCGAA	1 cut(s)	2385
BpuEI	CTTGAG	4 cut(s)	26, 190, 555, 843
BsaBI	GATNNNNATC	2 cut(s)	280, 907
BsaHI	GRCGYC	1 cut(s)	2009
BsaJI	CCNNGG	6 cut(s)	11, 912, 1403, 2583, 2823, 2997
BsaWI	WCCGGW	2 cut(s)	28, 2752
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 977, 993, 994, 2342, 2563, 2998
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	3 cut(s)	141, 532, 2122
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	174, 1237
Bse8I	GATNNNNATC	2 cut(s)	280, 907
BseBI	CCWGG	3 cut(s)	1984, 2282, 2424
BseDI	CCNNGG	6 cut(s)	11, 912, 1403, 2583, 2823, 2997
BseGI	GGATG	5 cut(s)	908, 1939, 2526, 2774, 2863
BseJI	GATNNNNATC	2 cut(s)	280, 907
BseLI	CCNNNNNNNGG	7 cut(s)	40, 977, 993, 994, 2342, 2563, 2998
BseMI	GCAATG	2 cut(s)	174, 1237
BseMII	CTCAG	9 cut(s)	169, 764, 1149, 1167, 1807, 1922, 2247, 2423, 2652
BseNI	ACTGG	3 cut(s)	141, 532, 2122
BseRI	GAGGAG	2 cut(s)	1636, 2127
BseSI	GKGCMC	1 cut(s)	1589
BseXI	GCAGC	6 cut(s)	127, 166, 254, 1954, 2454, 2958
BseYI	CCCAGC	1 cut(s)	1720
BsgI	GTGCAG	2 cut(s)	1203, 1450
BshFI	GGCC	7 cut(s)	1410, 1587, 2422, 2427, 2485, 2648, 2803
BshNI	GGYRCC	1 cut(s)	2008
BshTI	ACCGGT	1 cut(s)	28
BsiHKAI	GWGCWC	2 cut(s)	1081, 2881
BsiHKCI	CYCGRG	1 cut(s)	1404
BsiSI	CCGG	3 cut(s)	29, 584, 2753
BslFI	GGGAC	7 cut(s)	518, 828, 1185, 1289, 2313, 2608, 2980
BslI	CCNNNNNNNGG	7 cut(s)	40, 977, 993, 994, 2342, 2563, 2998
BsmAI	GTCTC	6 cut(s)	105, 397, 861, 1138, 1541, 2667
BsmFI	GGGAC	7 cut(s)	518, 828, 1185, 1289, 2313, 2608, 2980
BsmI	GAATGC	1 cut(s)	2188
BsnI	GGCC	7 cut(s)	1410, 1587, 2422, 2427, 2485, 2648, 2803
BsoBI	CYCGRG	1 cut(s)	1404
Bsp119I	TTCGAA	1 cut(s)	2385
Bsp120I	GGGCCC	1 cut(s)	1585
Bsp1286I	GDGCHC	4 cut(s)	1081, 1589, 2583, 2881
Bsp1407I	TGTACA	1 cut(s)	1947
Bsp143I	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
Bsp19I	CCATGG	1 cut(s)	2583
BspACI	CCGC	3 cut(s)	265, 1785, 2332
BspANI	GGCC	7 cut(s)	1410, 1587, 2422, 2427, 2485, 2648, 2803
BspCNI	CTCAG	9 cut(s)	168, 763, 1148, 1166, 1806, 1921, 2248, 2422, 2653
BspHI	TCATGA	2 cut(s)	1254, 1825
BspLI	GGNNCC	7 cut(s)	360, 1409, 1586, 1587, 2010, 2624, 2718
BspMAI	CTGCAG	3 cut(s)	145, 354, 2783
BspMI	ACCTGC	1 cut(s)	1472
BspOI	GCTAGC	1 cut(s)	1062
BspPI	GGATC	7 cut(s)	1259, 1275, 1736, 1863, 2711, 2724, 3009
BspT104I	TTCGAA	1 cut(s)	2385
BspT107I	GGYRCC	1 cut(s)	2008
BspTI	CTTAAG	1 cut(s)	1675
BsrDI	GCAATG	2 cut(s)	174, 1237
BsrFI	RCCGGY	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	1947
BsrI	ACTGG	3 cut(s)	141, 532, 2122
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	6 cut(s)	11, 912, 1403, 2583, 2823, 2997
BssMI	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
BssNI	GRCGYC	1 cut(s)	2009
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	3 cut(s)	11, 2583, 2823
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	1984, 2282, 2424
Bst4CI	ACNGT	6 cut(s)	450, 551, 838, 1247, 1430, 2689
Bst6I	CTCTTC	3 cut(s)	101, 2030, 2731
BstACI	GRCGYC	1 cut(s)	2009
BstAFI	CTTAAG	1 cut(s)	1675
BstAUI	TGTACA	1 cut(s)	1947
BstBI	TTCGAA	1 cut(s)	2385
BstC8I	GCNNGC	4 cut(s)	129, 489, 1060, 2707
BstDSI	CCRYGG	1 cut(s)	2583
BstEII	GGTNACC	1 cut(s)	1319
BstENI	CCTNNNNNAGG	1 cut(s)	2340
BstF5I	GGATG	5 cut(s)	908, 1939, 2526, 2774, 2863
BstH2I	RGCGCY	1 cut(s)	2012
BstHHI	GCGC	2 cut(s)	1903, 2011
BstKTI	GATC	8 cut(s)	1254, 1270, 1502, 1744, 1799, 1858, 2719, 3004
BstMAI	GTCTC	6 cut(s)	105, 397, 861, 1138, 1541, 2667
BstMBI	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
BstMWI	GCNNNNNNNGC	7 cut(s)	137, 149, 158, 179, 276, 488, 2439
BstNI	CCWGG	3 cut(s)	1984, 2282, 2424
BstNSI	RCATGY	3 cut(s)	1562, 1948, 2095
BstPI	GGTNACC	1 cut(s)	1319
BstSCI	CCNGG	3 cut(s)	1982, 2280, 2422
BstSFI	CTRYAG	4 cut(s)	141, 247, 350, 2779
BstSLI	GKGCMC	1 cut(s)	1589
BstV1I	GCAGC	6 cut(s)	127, 166, 254, 1954, 2454, 2958
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	3 cut(s)	1267, 1855, 2716
BstXI	CCANNNNNNTGG	1 cut(s)	2590
BstYI	RGATCY	3 cut(s)	1267, 1855, 2716
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	2 cut(s)	2167, 2929
BsuRI	GGCC	7 cut(s)	1410, 1587, 2422, 2427, 2485, 2648, 2803
BtgI	CCRYGG	1 cut(s)	2583
BtrI	CACGTC	1 cut(s)	2400
BtsCI	GGATG	5 cut(s)	908, 1939, 2526, 2774, 2863
BtsI	GCAGTG	3 cut(s)	1151, 1215, 1460
BtsIMutI	CAGTG	7 cut(s)	525, 1151, 1215, 1385, 1460, 2253, 2914
BveI	ACCTGC	1 cut(s)	1472
Cac8I	GCNNGC	4 cut(s)	129, 489, 1060, 2707
CciI	TCATGA	2 cut(s)	1254, 1825
CfoI	GCGC	2 cut(s)	1903, 2011
Cfr10I	RCCGGY	1 cut(s)	28
Cfr13I	GGNCC	6 cut(s)	31, 1342, 1408, 1585, 1586, 2622
Csp6I	GTAC	8 cut(s)	53, 252, 451, 1372, 1948, 2667, 2685, 2851
CspAI	ACCGGT	1 cut(s)	28
CviQI	GTAC	8 cut(s)	53, 252, 451, 1372, 1948, 2667, 2685, 2851
DinI	GGCGCC	1 cut(s)	2010
DpnI	GATC	8 cut(s)	1253, 1269, 1501, 1743, 1798, 1857, 2718, 3003
DpnII	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
DriI	GACNNNNNGTC	1 cut(s)	1301
Eam1104I	CTCTTC	3 cut(s)	101, 2030, 2731
Eam1105I	GACNNNNNGTC	1 cut(s)	1301
EarI	CTCTTC	3 cut(s)	101, 2030, 2731
EciI	GGCGGA	1 cut(s)	1800
Ecl136II	GAGCTC	1 cut(s)	1079
Eco130I	CCWWGG	3 cut(s)	11, 2583, 2823
Eco147I	AGGCCT	1 cut(s)	2648
Eco24I	GRGCYC	3 cut(s)	1081, 1589, 2583
Eco32I	GATATC	1 cut(s)	2479
Eco47I	GGWCC	3 cut(s)	31, 1342, 2622
Eco53kI	GAGCTC	1 cut(s)	1079
Eco57I	CTGAAG	3 cut(s)	690, 1203, 1944
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	1404
Eco91I	GGTNACC	1 cut(s)	1319
EcoICRI	GAGCTC	1 cut(s)	1079
EcoNI	CCTNNNNNAGG	1 cut(s)	2340
EcoO109I	RGGNCCY	3 cut(s)	1342, 1408, 1585
EcoO65I	GGTNACC	1 cut(s)	1319
EcoRI	GAATTC	3 cut(s)	1385, 1605, 1670
EcoRII	CCWGG	3 cut(s)	1982, 2280, 2422
EcoRV	GATATC	1 cut(s)	2479
EcoT14I	CCWWGG	3 cut(s)	11, 2583, 2823
EcoT22I	ATGCAT	1 cut(s)	2188
EcoT38I	GRGCYC	3 cut(s)	1081, 1589, 2583
EgeI	GGCGCC	1 cut(s)	2010
EheI	GGCGCC	1 cut(s)	2010
ErhI	CCWWGG	3 cut(s)	11, 2583, 2823
FaqI	GGGAC	7 cut(s)	518, 828, 1185, 1289, 2313, 2608, 2980
FauI	CCCGC	2 cut(s)	272, 2339
FauNDI	CATATG	4 cut(s)	1617, 1972, 2212, 2572
Fnu4HI	GCNGC	6 cut(s)	141, 180, 268, 1968, 2443, 2947
FokI	GGATG	5 cut(s)	895, 1946, 2513, 2761, 2850
FriOI	GRGCYC	3 cut(s)	1081, 1589, 2583
Fsp4HI	GCNGC	6 cut(s)	141, 180, 268, 1968, 2443, 2947
FspBI	CTAG	9 cut(s)	273, 1059, 1200, 1599, 1685, 1746, 2454, 2670, 2811
GlaI	GCGC	2 cut(s)	1902, 2010
GluI	GCNGC	6 cut(s)	141, 180, 268, 1968, 2443, 2947
GsaI	CCCAGC	1 cut(s)	1724
GsuI	CTGGAG	1 cut(s)	1571
HaeII	RGCGCY	1 cut(s)	2012
HaeIII	GGCC	7 cut(s)	1410, 1587, 2422, 2427, 2485, 2648, 2803
HapII	CCGG	3 cut(s)	29, 584, 2753
HhaI	GCGC	2 cut(s)	1903, 2011
Hin1I	GRCGYC	1 cut(s)	2009
Hin6I	GCGC	2 cut(s)	1901, 2009
HinP1I	GCGC	2 cut(s)	1901, 2009
HincII	GTYRAC	1 cut(s)	2872
HindII	GTYRAC	1 cut(s)	2872
HpaII	CCGG	3 cut(s)	29, 584, 2753
HphI	GGTGA	6 cut(s)	1392, 1655, 1739, 2138, 2255, 2588
Hpy166II	GTNNAC	6 cut(s)	334, 601, 1914, 2263, 2872, 3011
Hpy8I	GTNNAC	6 cut(s)	334, 601, 1914, 2263, 2872, 3011
Hpy99I	CGWCG	1 cut(s)	2404
HpyAV	CCTTC	7 cut(s)	222, 525, 805, 1048, 1333, 1953, 2288
HpyCH4III	ACNGT	6 cut(s)	450, 551, 838, 1247, 1430, 2689
HpyCH4IV	ACGT	5 cut(s)	72, 1691, 2399, 2609, 2741
HpyF10VI	GCNNNNNNNGC	7 cut(s)	137, 149, 158, 179, 276, 488, 2439
HpySE526I	ACGT	5 cut(s)	72, 1691, 2399, 2609, 2741
Hsp92I	GRCGYC	1 cut(s)	2009
HspAI	GCGC	2 cut(s)	1901, 2009
KasI	GGCGCC	1 cut(s)	2008
Kzo9I	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
LmnI	GCTCC	5 cut(s)	469, 1084, 1552, 2297, 2368
Lsp1109I	GCAGC	6 cut(s)	127, 166, 254, 1954, 2454, 2958
MaeI	CTAG	9 cut(s)	273, 1059, 1200, 1599, 1685, 1746, 2454, 2670, 2811
MaeII	ACGT	5 cut(s)	72, 1691, 2399, 2609, 2741
MaeIII	GTNAC	6 cut(s)	1148, 1195, 1319, 1569, 1687, 2126
MalI	GATC	8 cut(s)	1253, 1269, 1501, 1743, 1798, 1857, 2718, 3003
MboI	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
MfeI	CAATTG	3 cut(s)	1630, 1991, 2025
MflI	RGATCY	3 cut(s)	1267, 1855, 2716
MhlI	GDGCHC	4 cut(s)	1081, 1589, 2583, 2881
Mly113I	GGCGCC	1 cut(s)	2009
MlyI	GAGTC	3 cut(s)	1838, 1900, 2669
MmeI	TCCRAC	5 cut(s)	336, 628, 668, 939, 1812
Mph1103I	ATGCAT	1 cut(s)	2188
MroXI	GAANNNNTTC	4 cut(s)	408, 2552, 2788, 2893
MseI	TTAA	8 cut(s)	635, 717, 734, 905, 990, 1071, 1460, 1676
MslI	CAYNNNNRTG	4 cut(s)	846, 951, 1259, 2588
MspA1I	CMGCKG	2 cut(s)	267, 497
MspCI	CTTAAG	1 cut(s)	1675
MspI	CCGG	3 cut(s)	29, 584, 2753
MspR9I	CCNGG	3 cut(s)	1984, 2282, 2424
MunI	CAATTG	3 cut(s)	1630, 1991, 2025
Mva1269I	GAATGC	1 cut(s)	2188
MvaI	CCWGG	3 cut(s)	1984, 2282, 2424
MwoI	GCNNNNNNNGC	7 cut(s)	137, 149, 158, 179, 276, 488, 2439
NarI	GGCGCC	1 cut(s)	2009
NcoI	CCATGG	1 cut(s)	2583
NdeI	CATATG	4 cut(s)	1617, 1972, 2212, 2572
NdeII	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
NheI	GCTAGC	1 cut(s)	1058
NlaIV	GGNNCC	7 cut(s)	360, 1409, 1586, 1587, 2010, 2624, 2718
NmeAIII	GCCGAG	1 cut(s)	893
NmuCI	GTSAC	1 cut(s)	2126
NsiI	ATGCAT	1 cut(s)	2188
NspI	RCATGY	3 cut(s)	1562, 1948, 2095
NspV	TTCGAA	1 cut(s)	2385
PagI	TCATGA	2 cut(s)	1254, 1825
PceI	AGGCCT	1 cut(s)	2648
PciI	ACATGT	2 cut(s)	1558, 1944
PctI	GAATGC	1 cut(s)	2188
PdmI	GAANNNNTTC	4 cut(s)	408, 2552, 2788, 2893
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	6 cut(s)	142, 181, 269, 1969, 2444, 2948
PleI	GAGTC	3 cut(s)	1837, 1900, 2669
PluTI	GGCGCC	1 cut(s)	2012
PpsI	GAGTC	3 cut(s)	1837, 1900, 2669
PpuMI	RGGWCCY	1 cut(s)	1342
PscI	ACATGT	2 cut(s)	1558, 1944
Psp124BI	GAGCTC	1 cut(s)	1081
Psp5II	RGGWCCY	1 cut(s)	1342
Psp6I	CCWGG	3 cut(s)	1982, 2280, 2422
PspEI	GGTNACC	1 cut(s)	1319
PspFI	CCCAGC	1 cut(s)	1720
PspGI	CCWGG	3 cut(s)	1982, 2280, 2422
PspN4I	GGNNCC	7 cut(s)	360, 1409, 1586, 1587, 2010, 2624, 2718
PspOMI	GGGCCC	1 cut(s)	1585
PspPI	GGNCC	6 cut(s)	31, 1342, 1408, 1585, 1586, 2622
PspPPI	RGGWCCY	1 cut(s)	1342
PstI	CTGCAG	3 cut(s)	145, 354, 2783
PsuI	RGATCY	3 cut(s)	1267, 1855, 2716
PvuII	CAGCTG	1 cut(s)	497
RsaI	GTAC	8 cut(s)	54, 253, 452, 1373, 1949, 2668, 2686, 2852
RsaNI	GTAC	8 cut(s)	53, 252, 451, 1372, 1948, 2667, 2685, 2851
RseI	CAYNNNNRTG	4 cut(s)	846, 951, 1259, 2588
SacI	GAGCTC	1 cut(s)	1081
SaqAI	TTAA	8 cut(s)	635, 717, 734, 905, 990, 1071, 1460, 1676
SatI	GCNGC	6 cut(s)	141, 180, 268, 1968, 2443, 2947
Sau3AI	GATC	8 cut(s)	1251, 1267, 1499, 1741, 1796, 1855, 2716, 3001
Sau96I	GGNCC	6 cut(s)	31, 1342, 1408, 1585, 1586, 2622
ScaI	AGTACT	4 cut(s)	452, 1373, 2668, 2686
SchI	GAGTC	3 cut(s)	1838, 1900, 2669
ScrFI	CCNGG	3 cut(s)	1984, 2282, 2424
SduI	GDGCHC	4 cut(s)	1081, 1589, 2583, 2881
SfcI	CTRYAG	4 cut(s)	141, 247, 350, 2779
SfoI	GGCGCC	1 cut(s)	2010
SfuI	TTCGAA	1 cut(s)	2385
SinI	GGWCC	3 cut(s)	31, 1342, 2622
SmiMI	CAYNNNNRTG	4 cut(s)	846, 951, 1259, 2588
SmlI	CTYRAG	5 cut(s)	5, 205, 570, 858, 1675
SmoI	CTYRAG	5 cut(s)	5, 205, 570, 858, 1675
SseBI	AGGCCT	1 cut(s)	2648
SsiI	CCGC	3 cut(s)	265, 1785, 2332
SspDI	GGCGCC	1 cut(s)	2008
SspI	AATATT	2 cut(s)	793, 1002
SspMI	CTAG	9 cut(s)	273, 1059, 1200, 1599, 1685, 1746, 2454, 2670, 2811
SstI	GAGCTC	1 cut(s)	1081
StuI	AGGCCT	1 cut(s)	2648
StyD4I	CCNGG	3 cut(s)	1982, 2280, 2422
StyI	CCWWGG	3 cut(s)	11, 2583, 2823
TaaI	ACNGT	6 cut(s)	450, 551, 838, 1247, 1430, 2689
TaiI	ACGT	5 cut(s)	75, 1694, 2402, 2612, 2744
TaqI	TCGA	3 cut(s)	1978, 2385, 2402
TaqII	GACCGA	1 cut(s)	3006
TatI	WGTACW	7 cut(s)	52, 251, 450, 1371, 1947, 2666, 2684
Tru1I	TTAA	8 cut(s)	635, 717, 734, 905, 990, 1071, 1460, 1676
Tru9I	TTAA	8 cut(s)	635, 717, 734, 905, 990, 1071, 1460, 1676
TscAI	CASTG	7 cut(s)	532, 1151, 1222, 1385, 1460, 2260, 2914
TseFI	GTSAC	1 cut(s)	2126
TseI	GCWGC	6 cut(s)	140, 179, 267, 1967, 2442, 2946
Tsp45I	GTSAC	1 cut(s)	2126
TspGWI	ACGGA	1 cut(s)	1071
TspRI	CASTG	7 cut(s)	532, 1151, 1222, 1385, 1460, 2260, 2914
Vha464I	CTTAAG	1 cut(s)	1675
VpaK11BI	GGWCC	3 cut(s)	31, 1342, 2622
XagI	CCTNNNNNAGG	1 cut(s)	2340
XapI	RAATTY	6 cut(s)	1117, 1385, 1605, 1670, 2380, 2786
XbaI	TCTAGA	1 cut(s)	272
XceI	RCATGY	3 cut(s)	1562, 1948, 2095
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1643
XmnI	GAANNNNTTC	4 cut(s)	408, 2552, 2788, 2893
XspI	CTAG	9 cut(s)	273, 1059, 1200, 1599, 1685, 1746, 2454, 2670, 2811
ZrmI	AGTACT	4 cut(s)	452, 1373, 2668, 2686
Zsp2I	ATGCAT	1 cut(s)	2188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.