Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005444

Physical Location & Seq

Genomic Coordinates Reverse (-)

28980166 .. 28987793

Gene Structure 7628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1193900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3027 bp

ATGCTTGAGCCAAGGGAAGCTGATATACCTGCTCTGTTTCTGGTTTTCGTTGTACTCCCTTTAGTTGCTTATGTTTTACTTGGAAAATGGAGTGAGACATCTAAGAAGACAGAGAGGGTAAGTTTGCTTGCTCAACTGGCTGCAGAAGAAGCTCTTAGAGTAGAAACAATGGCCATTGCTGCTGTTATTCCTCCTGTGTCTTCTTCAAATCCTTCGAAGAATGGACTTCAAGTATGTGCCAGATGCTATAGTACAGCTACAACCCGCTGCTCTAGATGCAAATCCATCAGATATTGTTCTGGTAAGTGTCAAATAATTCACTGGAGGGAAGTTCACAGGCAAGAATGCCTGCAGTTGGAACCTACTAGTTCAAGCTCATCTCCTAAGGCTGTCTCATTTGGAGAATCTTTTCATGAGAAGTTATTACCTAATGACAGCATCAATTCACAGTACTTTGGGTGTAAGATGGAGCACATTTTGGCTGAGCAAGCACCACCAGATAATATAATTTATCCTTCAACAAGCACTGGTGCCCCCGTTATGCTTGATTGTGCTTCTTTAGTTGATACCTCTCAAGTTTCCATGCCAGAGAGAAGAAGTGTGGACAAGTGGGTTTCCAGAAAATCCCACAGAGAATTAAGAAAAAAAGTTGGAGTTGCATTTGATTCTTCTGAAGAAACATCTTTTGGTTGGACTACCCATTCGGGCTCTTCTAATGTTAATTCATCAAAAGAGGTTTTTATGGAGCATAAGTTAAGAAATTGTGACTCTCACTTAGCAGAGGAAGAAAATGCTATGATGCAAAATTTCAATATTTCTGACAGTTATATGAAAGGTCAAGCTACTTCAAGAAATACGGTGCGTGAGATTGATAAGTCTCAAAGTCAAAGTGGCTACATATATGAATCAGGAAGCAACTCTGGATCAACATCCTCGTCATATTCTTCAAAAAGTGGAATAGATGTGCATGAAAATGGGTTGGACTTCATTCCGAATGCAGGAAATTACCTTAAAGAGGAAAGATTATCCAATTATGAAACAGCAGAGTTCAAATGTGCTGAAATGACGAAAATGAAGACTGAAGTAAAGGCTAAAAGAGCTCCGTATTCCCTTGGGACCAAGTTGTCTAAATTACCAAAATCAACAATGGAAGTCTCCGGAGAGCAGTGTTACTCAGAGAGAGAGGGGCAGGAACAAATTGCTGAAGTTTCAAAAATCACTAGAATGAGAGATACCACTGCACAAGGGAGCAATGGAATTGCAAATGTAAGGATCATGAAGATGATGGGTCTAAAGAAGCCAAAGAACTTTACCAGACAGGAAGTCCCCGAATTGAATGGTTACCAACAGAAAACTAAGGTCCTGTTTCCTTATGATGAGTTTGTGAAGTACCTTCAGTGCGAAGTCTTTGACTTATCACCTCGGGGCCTTTTGAATTGTGGGAACAGTTGCTATGCAAATGTCGTCTTGCAGTGCTTAACCTGCACAAAGCCTCTCATTATCTATTTGCTTCGCAGATCACATTCAAGAGCCTGTTGTGGTAAAGATTGGTGTCTCATGTGTGAGCTGGAGCAACATGTGATGATGCTACGAGAAAGTGGGGGCCCACTTTCTCCTAGTCGAATTCTTTTTCATATGAGGAGTATTAATTGCCAAATTGGTGATGGAAGTCAAGAAGATGCACATGAATTCTTAAGGCTTCTAGTTACGTCAATGCAATCTATATGCTTGGAGGGGCTGGGTGGTGAAAGCAAGGTTGATCCTAGATTGCAAGAAACAACTTTTATACAACATACATTTGGCGGACATCTCAGATCAAAGGTCAAGTGTTTGAGATGTCATCATGAGTCAGAACGATATGAAAACATCATGGATCTTACCTTAGAGATATTTGGTTGGGTTGAGTCACTTGAAGATGCGCTGACTCAGTTTACAACCCCTGAAGATTTGGATGGAGAAAACATGTACAGATGTGGAAGGTGTGCTGCTTATGTTCGAGCCAGGAAGCAATTGAGCATACATGAGGCGCCAAATATCCTCACAATTGTCTTGAAGAGATTTCAGGAGGGAAATTATGGAAAAATAAACAAGTGCATCACTTTTCCAGACATGCTGGATATGATTCCATTTATGACTGGAACGGGTGACATTCCTCCGCTTTACTTGCTATATGGTGTTGTGGTGCATTTGGATACGCAGAATGCATCTTTCTCTGGACATTATGTGGCATATGTGAAAGACATGCGAGGTGATTGGTTCAGGATAGATGACACTGAGGTTCACCCCGTTTCAATGAGCCAGGTTATGATGGAAGGAGCATATATCTTATTTTACATGAGGTCTTGTCCCCGCCCTCAAGGAGGATTTTCTGGAAAAGCTATCAAGGAGCAAGTTCCAGGCTTAGAAAATCAATGCCTGTTGAAAGCTCAGAAGTCAAGGCTAGATCAAAGCAAACACAGCAGGCAATTTGCTAGGCCAGAGCATTTACCAGATGATATCAGGCCAGAGATTGCAGCTGCCTTTGGCAACAGCACCGCTAATGATATCCTTAGGAGTTCTAACAGGAATGTTTTCCCTAGGATGGAAACATATGGTGGGCCCATCGGTGTGGAGTTCTCTGATGCTACGTCAAGTGATTGGTCTCTTTTTACAAGTTCTGATGAGGCCTCGTTCACGACTGAGAGTACAAGAGACTCTTTCAGTACTGTGGATTGTGCCGATGCTTGCAATATCGATCCAGTCTGTTCAATTTTATATGCTCCGGAGTATTCTCACAGTTCTGCATCCTGTAGAAAATTTTCCAATAGTAGGCCACACACTAGATTTGTTTCCAAGGAAAGGGGTGTTATTTTGGATTCATGCTTGTCAACCCATCCCGTTGACAGAGTACAGAAACGAAACTATTCAAGACAGGTCAGTGATTCACAAACCGAACACCCTCTGGATAGTAAATGCAGCTCGTTTGTAAGATATGGGACTAACCCAATGCATAGTCTTGACCGAACTTCAGATCATTGCAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-MYND

Protein Analysis

1009

Amino Acids

113.28

Weight (kDa)

6.76

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-MYND	PF01753	79 - 116	9e-09	MYND finger
UCH	PF00443	475 - 778	1.8e-51	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	476 - 760	7.6e-20	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17110 AT1G17110 AT1G17110
fragaria_vesca	FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820 FvH4_3g16820
malus_domestica	MD05G1206800.v1.1 MD10G1193900.v1.1
prunus_persica	Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1 Prupe.4G150400_v2.0.a1
pyrus_communis	pycom05g19290 pycom10g16770
rosa_chinensis	RchiOBHm_Chr5g0028031
rosa_laevigata	RLG00000033059
rosa_multiflora	Rmu_sc0009432.1_g000009
rosa_roxburghii	Rroxscaffold_1G00051630
rosa_rugosa	Rorug05G0103600
rosa_samantha	Rh5AG197200 Rh5BG195400 Rh5CG215600 Rh5DG197000
rosa_wichuraiana	Rw5G017980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1123
Acc36I	ACCTGC	2 cut(s)	37, 1490
AccB1I	GGYRCC	2 cut(s)	530, 2026
AccIII	TCCGGA	2 cut(s)	1157, 2761
AciI	CCGC	5 cut(s)	265, 1803, 2156, 2350, 2535
AclWI	GGATC	5 cut(s)	931, 1280, 1754, 1881, 2729
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	4 cut(s)	805, 1623, 1688, 2795
AcuI	CTGAAG	6 cut(s)	693, 1101, 1224, 1379, 1962, 2991
AcyI	GRCGYC	1 cut(s)	2027
AfaI	GTAC	8 cut(s)	54, 253, 452, 1391, 1967, 2686, 2704, 2889
AfiI	CCNNNNNNNGG	7 cut(s)	355, 998, 1015, 2360, 2581, 2808, 2838
AflII	CTTAAG	1 cut(s)	1693
AflIII	ACRYGT	2 cut(s)	1576, 1962
AhdI	GACNNNNNGTC	1 cut(s)	1322
AhlI	ACTAGT	1 cut(s)	365
AjnI	CCWGG	3 cut(s)	2000, 2298, 2395
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
Alw21I	GWGCWC	2 cut(s)	474, 1102
Alw26I	GTCTC	7 cut(s)	89, 397, 882, 1159, 1559, 2646, 2685
AlwI	GGATC	5 cut(s)	931, 1280, 1754, 1881, 2729
Ama87I	CYCGRG	1 cut(s)	1422
Aor13HI	TCCGGA	2 cut(s)	1157, 2761
AoxI	GGCC	8 cut(s)	171, 1426, 1603, 2474, 2501, 2597, 2664, 2810
ApaI	GGGCCC	2 cut(s)	1607, 2601
ApeKI	GCWGC	7 cut(s)	140, 179, 267, 1985, 2513, 2516, 2955
ApoI	RAATTY	4 cut(s)	805, 1623, 1688, 2795
ArsI	GACNNNNNNTTYG	2 cut(s)	685, 717
AseI	ATTAAT	1 cut(s)	1647
Asp700I	GAANNNNTTC	4 cut(s)	408, 2570, 2797, 2902
AspA2I	CCTAGG	1 cut(s)	2576
AspLEI	GCGC	2 cut(s)	1921, 2029
AspS9I	GGNCC	7 cut(s)	1116, 1360, 1426, 1603, 1604, 2597, 2598
AsuHPI	GGTGA	6 cut(s)	1410, 1673, 1757, 2156, 2261, 2273
AsuII	TTCGAA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	1422
AvaII	GGWCC	2 cut(s)	1116, 1360
AvrII	CCTAGG	1 cut(s)	2576
AxyI	CCTNAGG	2 cut(s)	384, 2549
BaeGI	GKGCMC	3 cut(s)	535, 1607, 2601
BalI	TGGCCA	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	530, 2026
BanII	GRGCYC	4 cut(s)	710, 1102, 1607, 2601
BarI	GAAGNNNNNNTAC	2 cut(s)	9, 41
BbsI	GAAGAC	3 cut(s)	113, 192, 1082
Bbv12I	GWGCWC	2 cut(s)	474, 1102
BbvI	GCAGC	7 cut(s)	127, 166, 254, 1972, 2503, 2525, 2967
BccI	CCATC	9 cut(s)	293, 460, 1279, 1658, 1946, 2302, 2575, 2609, 2880
BciT130I	CCWGG	3 cut(s)	2002, 2300, 2397
BciVI	GTATCC	1 cut(s)	2185
BcoDI	GTCTC	7 cut(s)	89, 397, 882, 1159, 1559, 2646, 2685
BcuI	ACTAGT	1 cut(s)	365
BfmI	CTRYAG	4 cut(s)	141, 247, 350, 2788
BfoI	RGCGCY	1 cut(s)	2030
BfrI	CTTAAG	1 cut(s)	1693
BfuAI	ACCTGC	2 cut(s)	37, 1490
BfuI	GTATCC	1 cut(s)	2185
BisI	GCNGC	7 cut(s)	141, 180, 268, 1986, 2514, 2517, 2956
BlnI	CCTAGG	1 cut(s)	2576
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	7 cut(s)	142, 181, 269, 1987, 2515, 2518, 2957
BmcAI	AGTACT	2 cut(s)	452, 2704
Bme1390I	CCNGG	3 cut(s)	2002, 2300, 2397
Bme18I	GGWCC	2 cut(s)	1116, 1360
BmeRI	GACNNNNNGTC	1 cut(s)	1322
BmeT110I	CYCGRG	1 cut(s)	1422
BmgT120I	GGNCC	7 cut(s)	1116, 1360, 1426, 1603, 1604, 2597, 2598
BmiI	GGNNCC	8 cut(s)	360, 532, 1117, 1427, 1604, 1605, 2028, 2599
BmrFI	CCNGG	3 cut(s)	2002, 2300, 2397
BpiI	GAAGAC	3 cut(s)	113, 192, 1082
BpmI	CTGGAG	2 cut(s)	343, 1589
Bpu1102I	GCTNAGC	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	215
BpuEI	CTTGAG	3 cut(s)	26, 558, 2340
Bsa29I	ATCGAT	1 cut(s)	2733
BsaBI	GATNNNNATC	2 cut(s)	280, 928
BsaHI	GRCGYC	1 cut(s)	2027
BsaI	GGTCTC	1 cut(s)	2646
BsaJI	CCNNGG	5 cut(s)	11, 1111, 1421, 2576, 2832
BsaWI	WCCGGW	2 cut(s)	1157, 2761
BsaXI	ACNNNNNCTCC	2 cut(s)	737, 767
Bsc4I	CCNNNNNNNGG	7 cut(s)	355, 998, 1015, 2360, 2581, 2808, 2838
Bse1I	ACTGG	5 cut(s)	141, 326, 532, 2140, 2738
Bse21I	CCTNAGG	2 cut(s)	384, 2549
Bse3DI	GCAATG	3 cut(s)	174, 1258, 3013
Bse8I	GATNNNNATC	2 cut(s)	280, 928
BseAI	TCCGGA	2 cut(s)	1157, 2761
BseBI	CCWGG	3 cut(s)	2002, 2300, 2397
BseCI	ATCGAT	1 cut(s)	2733
BseDI	CCNNGG	5 cut(s)	11, 1111, 1421, 2576, 2832
BseGI	GGATG	5 cut(s)	929, 1957, 2586, 2783, 2872
BseJI	GATNNNNATC	2 cut(s)	280, 928
BseLI	CCNNNNNNNGG	7 cut(s)	355, 998, 1015, 2360, 2581, 2808, 2838
BseMI	GCAATG	3 cut(s)	174, 1258, 3013
BseMII	CTCAG	7 cut(s)	474, 1188, 1825, 1940, 2265, 2441, 2670
BseNI	ACTGG	5 cut(s)	141, 326, 532, 2140, 2738
BseRI	GAGGAG	1 cut(s)	1654
BseSI	GKGCMC	3 cut(s)	535, 1607, 2601
BseXI	GCAGC	7 cut(s)	127, 166, 254, 1972, 2503, 2525, 2967
BseYI	CCCAGC	1 cut(s)	1738
BsgI	GTGCAG	2 cut(s)	1224, 1468
BshFI	GGCC	8 cut(s)	173, 1428, 1605, 2476, 2503, 2599, 2666, 2812
BshNI	GGYRCC	2 cut(s)	530, 2026
BshVI	ATCGAT	1 cut(s)	2733
BsiHKAI	GWGCWC	2 cut(s)	474, 1102
BsiHKCI	CYCGRG	1 cut(s)	1422
BsiSI	CCGG	2 cut(s)	1158, 2762
BslFI	GGGAC	4 cut(s)	1129, 1310, 2331, 2989
BslI	CCNNNNNNNGG	7 cut(s)	355, 998, 1015, 2360, 2581, 2808, 2838
BsmAI	GTCTC	7 cut(s)	89, 397, 882, 1159, 1559, 2646, 2685
BsmFI	GGGAC	4 cut(s)	1129, 1310, 2331, 2989
BsmI	GAATGC	3 cut(s)	350, 1000, 2206
BsnI	GGCC	8 cut(s)	173, 1428, 1605, 2476, 2503, 2599, 2666, 2812
Bso31I	GGTCTC	1 cut(s)	2646
BsoBI	CYCGRG	1 cut(s)	1422
Bsp119I	TTCGAA	1 cut(s)	215
Bsp120I	GGGCCC	2 cut(s)	1603, 2597
Bsp1286I	GDGCHC	6 cut(s)	474, 535, 710, 1102, 1607, 2601
Bsp13I	TCCGGA	2 cut(s)	1157, 2761
Bsp1407I	TGTACA	1 cut(s)	1965
Bsp143I	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	5 cut(s)	265, 1803, 2156, 2350, 2535
BspANI	GGCC	8 cut(s)	173, 1428, 1605, 2476, 2503, 2599, 2666, 2812
BspCNI	CTCAG	7 cut(s)	475, 1187, 1824, 1939, 2266, 2440, 2671
BspDI	ATCGAT	1 cut(s)	2733
BspEI	TCCGGA	2 cut(s)	1157, 2761
BspHI	TCATGA	3 cut(s)	412, 1275, 1843
BspLI	GGNNCC	8 cut(s)	360, 532, 1117, 1427, 1604, 1605, 2028, 2599
BspMAI	CTGCAG	2 cut(s)	145, 354
BspMI	ACCTGC	2 cut(s)	37, 1490
BspPI	GGATC	5 cut(s)	931, 1280, 1754, 1881, 2729
BspQI	GCTCTTC	1 cut(s)	715
BspT104I	TTCGAA	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	530, 2026
BspTI	CTTAAG	1 cut(s)	1693
BspTNI	GGTCTC	1 cut(s)	2646
BsrDI	GCAATG	3 cut(s)	174, 1258, 3013
BsrGI	TGTACA	1 cut(s)	1965
BsrI	ACTGG	5 cut(s)	141, 326, 532, 2140, 2738
BssECI	CCNNGG	5 cut(s)	11, 1111, 1421, 2576, 2832
BssMI	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
BssNI	GRCGYC	1 cut(s)	2027
BssT1I	CCWWGG	4 cut(s)	11, 1111, 2576, 2832
Bst2UI	CCWGG	3 cut(s)	2002, 2300, 2397
Bst4CI	ACNGT	6 cut(s)	450, 824, 859, 1448, 2707, 2777
Bst6I	CTCTTC	2 cut(s)	715, 2048
BstACI	GRCGYC	1 cut(s)	2027
BstAFI	CTTAAG	1 cut(s)	1693
BstAUI	TGTACA	1 cut(s)	1965
BstBI	TTCGAA	1 cut(s)	215
BstC8I	GCNNGC	5 cut(s)	129, 350, 489, 2462, 2725
BstEII	GGTNACC	1 cut(s)	1340
BstENI	CCTNNNNNAGG	2 cut(s)	1013, 2358
BstF5I	GGATG	5 cut(s)	929, 1957, 2586, 2783, 2872
BstH2I	RGCGCY	1 cut(s)	2030
BstHHI	GCGC	2 cut(s)	1921, 2029
BstKTI	GATC	9 cut(s)	926, 1275, 1520, 1762, 1817, 1876, 2446, 2737, 3013
BstMAI	GTCTC	7 cut(s)	89, 397, 882, 1159, 1559, 2646, 2685
BstMBI	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
BstMWI	GCNNNNNNNGC	9 cut(s)	137, 149, 179, 276, 488, 1097, 1482, 2164, 2457
BstNI	CCWGG	3 cut(s)	2002, 2300, 2397
BstNSI	RCATGY	4 cut(s)	1580, 1966, 2113, 2245
BstPI	GGTNACC	1 cut(s)	1340
BstSCI	CCNGG	3 cut(s)	2000, 2298, 2395
BstSFI	CTRYAG	4 cut(s)	141, 247, 350, 2788
BstSLI	GKGCMC	3 cut(s)	535, 1607, 2601
BstV1I	GCAGC	7 cut(s)	127, 166, 254, 1972, 2503, 2525, 2967
BstV2I	GAAGAC	3 cut(s)	113, 192, 1082
BstX2I	RGATCY	1 cut(s)	1873
BstXI	CCANNNNNNTGG	1 cut(s)	2608
BstYI	RGATCY	1 cut(s)	1873
Bsu15I	ATCGAT	1 cut(s)	2733
Bsu36I	CCTNAGG	2 cut(s)	384, 2549
BsuI	GTATCC	1 cut(s)	2185
BsuRI	GGCC	8 cut(s)	173, 1428, 1605, 2476, 2503, 2599, 2666, 2812
BsuTUI	ATCGAT	1 cut(s)	2733
BtsCI	GGATG	5 cut(s)	929, 1957, 2586, 2783, 2872
BtsI	GCAGTG	3 cut(s)	1172, 1236, 1478
BtsIMutI	CAGTG	8 cut(s)	319, 525, 1172, 1236, 1403, 1478, 2271, 2923
BveI	ACCTGC	2 cut(s)	37, 1490
Cac8I	GCNNGC	5 cut(s)	129, 350, 489, 2462, 2725
CciI	TCATGA	3 cut(s)	412, 1275, 1843
CfoI	GCGC	2 cut(s)	1921, 2029
Cfr13I	GGNCC	7 cut(s)	1116, 1360, 1426, 1603, 1604, 2597, 2598
ClaI	ATCGAT	1 cut(s)	2733
Csp6I	GTAC	8 cut(s)	53, 252, 451, 1390, 1966, 2685, 2703, 2888
CviQI	GTAC	8 cut(s)	53, 252, 451, 1390, 1966, 2685, 2703, 2888
DinI	GGCGCC	1 cut(s)	2028
DpnI	GATC	9 cut(s)	925, 1274, 1519, 1761, 1816, 1875, 2445, 2736, 3012
DpnII	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
DrdI	GACNNNNNNGTC	1 cut(s)	1123
DriI	GACNNNNNGTC	1 cut(s)	1322
DseDI	GACNNNNNNGTC	1 cut(s)	1123
EaeI	YGGCCR	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	715, 2048
Eam1105I	GACNNNNNGTC	1 cut(s)	1322
EarI	CTCTTC	2 cut(s)	715, 2048
EciI	GGCGGA	1 cut(s)	1818
Ecl136II	GAGCTC	1 cut(s)	1100
Eco130I	CCWWGG	4 cut(s)	11, 1111, 2576, 2832
Eco147I	AGGCCT	1 cut(s)	2666
Eco24I	GRGCYC	4 cut(s)	710, 1102, 1607, 2601
Eco31I	GGTCTC	1 cut(s)	2646
Eco32I	GATATC	2 cut(s)	2497, 2545
Eco47I	GGWCC	2 cut(s)	1116, 1360
Eco53kI	GAGCTC	1 cut(s)	1100
Eco57I	CTGAAG	6 cut(s)	693, 1101, 1224, 1379, 1962, 2991
Eco81I	CCTNAGG	2 cut(s)	384, 2549
Eco88I	CYCGRG	1 cut(s)	1422
Eco91I	GGTNACC	1 cut(s)	1340
EcoICRI	GAGCTC	1 cut(s)	1100
EcoNI	CCTNNNNNAGG	2 cut(s)	1013, 2358
EcoO109I	RGGNCCY	3 cut(s)	1360, 1426, 1603
EcoO65I	GGTNACC	1 cut(s)	1340
EcoRI	GAATTC	2 cut(s)	1623, 1688
EcoRII	CCWGG	3 cut(s)	2000, 2298, 2395
EcoRV	GATATC	2 cut(s)	2497, 2545
EcoT14I	CCWWGG	4 cut(s)	11, 1111, 2576, 2832
EcoT22I	ATGCAT	2 cut(s)	2206, 2991
EcoT38I	GRGCYC	4 cut(s)	710, 1102, 1607, 2601
EgeI	GGCGCC	1 cut(s)	2028
EheI	GGCGCC	1 cut(s)	2028
ErhI	CCWWGG	4 cut(s)	11, 1111, 2576, 2832
FalI	AAGNNNNNCTT	4 cut(s)	138, 170, 2680, 2712
FaqI	GGGAC	4 cut(s)	1129, 1310, 2331, 2989
FauI	CCCGC	2 cut(s)	272, 2357
FauNDI	CATATG	3 cut(s)	1635, 2230, 2590
Fnu4HI	GCNGC	7 cut(s)	141, 180, 268, 1986, 2514, 2517, 2956
FokI	GGATG	5 cut(s)	916, 1964, 2593, 2770, 2859
FriOI	GRGCYC	4 cut(s)	710, 1102, 1607, 2601
Fsp4HI	GCNGC	7 cut(s)	141, 180, 268, 1986, 2514, 2517, 2956
GlaI	GCGC	2 cut(s)	1920, 2028
GluI	GCNGC	7 cut(s)	141, 180, 268, 1986, 2514, 2517, 2956
GsaI	CCCAGC	1 cut(s)	1742
GsuI	CTGGAG	2 cut(s)	343, 1589
HaeII	RGCGCY	1 cut(s)	2030
HaeIII	GGCC	8 cut(s)	173, 1428, 1605, 2476, 2503, 2599, 2666, 2812
HapII	CCGG	2 cut(s)	1158, 2762
HhaI	GCGC	2 cut(s)	1921, 2029
Hin1I	GRCGYC	1 cut(s)	2027
Hin6I	GCGC	2 cut(s)	1919, 2027
HinP1I	GCGC	2 cut(s)	1919, 2027
HincII	GTYRAC	2 cut(s)	2868, 2881
HindII	GTYRAC	2 cut(s)	2868, 2881
HpaII	CCGG	2 cut(s)	1158, 2762
HphI	GGTGA	6 cut(s)	1410, 1673, 1757, 2156, 2261, 2273
Hpy166II	GTNNAC	7 cut(s)	334, 604, 1932, 2281, 2673, 2868, 2881
Hpy8I	GTNNAC	7 cut(s)	334, 604, 1932, 2281, 2673, 2868, 2881
HpyAV	CCTTC	5 cut(s)	222, 525, 1403, 1971, 2306
HpyCH4III	ACNGT	6 cut(s)	450, 824, 859, 1448, 2707, 2777
HpyCH4IV	ACGT	2 cut(s)	1709, 2627
HpyF10VI	GCNNNNNNNGC	9 cut(s)	137, 149, 179, 276, 488, 1097, 1482, 2164, 2457
HpySE526I	ACGT	2 cut(s)	1709, 2627
Hsp92I	GRCGYC	1 cut(s)	2027
HspAI	GCGC	2 cut(s)	1919, 2027
KasI	GGCGCC	1 cut(s)	2026
Kpn2I	TCCGGA	2 cut(s)	1157, 2761
Kzo9I	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
LguI	GCTCTTC	1 cut(s)	715
LmnI	GCTCC	8 cut(s)	469, 745, 1105, 1248, 1570, 2315, 2386, 2764
Lsp1109I	GCAGC	7 cut(s)	127, 166, 254, 1972, 2503, 2525, 2967
MaeII	ACGT	2 cut(s)	1709, 2627
MaeIII	GTNAC	6 cut(s)	764, 1169, 1340, 1705, 1905, 2144
MalI	GATC	9 cut(s)	925, 1274, 1519, 1761, 1816, 1875, 2445, 2736, 3012
MboI	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
MfeI	CAATTG	2 cut(s)	2009, 2043
MflI	RGATCY	1 cut(s)	1873
MhlI	GDGCHC	6 cut(s)	474, 535, 710, 1102, 1607, 2601
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
Mly113I	GGCGCC	1 cut(s)	2027
MlyI	GAGTC	5 cut(s)	761, 1856, 1913, 1918, 2687
MmeI	TCCRAC	4 cut(s)	336, 631, 671, 960
Mox20I	TGGCCA	1 cut(s)	173
Mph1103I	ATGCAT	2 cut(s)	2206, 2991
MroI	TCCGGA	2 cut(s)	1157, 2761
MroXI	GAANNNNTTC	4 cut(s)	408, 2570, 2797, 2902
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	7 cut(s)	638, 720, 755, 1011, 1478, 1647, 1694
MslI	CAYNNNNRTG	4 cut(s)	972, 1223, 1280, 2606
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	267, 2516
MspCI	CTTAAG	1 cut(s)	1693
MspI	CCGG	2 cut(s)	1158, 2762
MspR9I	CCNGG	3 cut(s)	2002, 2300, 2397
MunI	CAATTG	2 cut(s)	2009, 2043
Mva1269I	GAATGC	3 cut(s)	350, 1000, 2206
MvaI	CCWGG	3 cut(s)	2002, 2300, 2397
MwoI	GCNNNNNNNGC	9 cut(s)	137, 149, 179, 276, 488, 1097, 1482, 2164, 2457
NarI	GGCGCC	1 cut(s)	2027
NdeI	CATATG	3 cut(s)	1635, 2230, 2590
NdeII	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
NlaIV	GGNNCC	8 cut(s)	360, 532, 1117, 1427, 1604, 1605, 2028, 2599
NmuCI	GTSAC	3 cut(s)	764, 1905, 2144
NsiI	ATGCAT	2 cut(s)	2206, 2991
NspI	RCATGY	4 cut(s)	1580, 1966, 2113, 2245
NspV	TTCGAA	1 cut(s)	215
PagI	TCATGA	3 cut(s)	412, 1275, 1843
PceI	AGGCCT	1 cut(s)	2666
PciI	ACATGT	2 cut(s)	1576, 1962
PciSI	GCTCTTC	1 cut(s)	715
PctI	GAATGC	3 cut(s)	350, 1000, 2206
PdmI	GAANNNNTTC	4 cut(s)	408, 2570, 2797, 2902
PfeI	GAWTC	6 cut(s)	404, 665, 905, 2122, 2855, 2921
PkrI	GCNGC	7 cut(s)	142, 181, 269, 1987, 2515, 2518, 2957
PleI	GAGTC	5 cut(s)	761, 1855, 1912, 1918, 2687
PluTI	GGCGCC	1 cut(s)	2030
PpsI	GAGTC	5 cut(s)	761, 1855, 1912, 1918, 2687
PpuMI	RGGWCCY	1 cut(s)	1360
PscI	ACATGT	2 cut(s)	1576, 1962
PshBI	ATTAAT	1 cut(s)	1647
Psp124BI	GAGCTC	1 cut(s)	1102
Psp5II	RGGWCCY	1 cut(s)	1360
Psp6I	CCWGG	3 cut(s)	2000, 2298, 2395
PspEI	GGTNACC	1 cut(s)	1340
PspFI	CCCAGC	1 cut(s)	1738
PspGI	CCWGG	3 cut(s)	2000, 2298, 2395
PspN4I	GGNNCC	8 cut(s)	360, 532, 1117, 1427, 1604, 1605, 2028, 2599
PspOMI	GGGCCC	2 cut(s)	1603, 2597
PspPI	GGNCC	7 cut(s)	1116, 1360, 1426, 1603, 1604, 2597, 2598
PspPPI	RGGWCCY	1 cut(s)	1360
PstI	CTGCAG	2 cut(s)	145, 354
PsuI	RGATCY	1 cut(s)	1873
PvuII	CAGCTG	1 cut(s)	2516
RsaI	GTAC	8 cut(s)	54, 253, 452, 1391, 1967, 2686, 2704, 2889
RsaNI	GTAC	8 cut(s)	53, 252, 451, 1390, 1966, 2685, 2703, 2888
RseI	CAYNNNNRTG	4 cut(s)	972, 1223, 1280, 2606
SacI	GAGCTC	1 cut(s)	1102
SapI	GCTCTTC	1 cut(s)	715
SaqAI	TTAA	7 cut(s)	638, 720, 755, 1011, 1478, 1647, 1694
SatI	GCNGC	7 cut(s)	141, 180, 268, 1986, 2514, 2517, 2956
Sau3AI	GATC	9 cut(s)	923, 1272, 1517, 1759, 1814, 1873, 2443, 2734, 3010
Sau96I	GGNCC	7 cut(s)	1116, 1360, 1426, 1603, 1604, 2597, 2598
ScaI	AGTACT	2 cut(s)	452, 2704
SchI	GAGTC	5 cut(s)	761, 1856, 1913, 1918, 2687
ScrFI	CCNGG	3 cut(s)	2002, 2300, 2397
SduI	GDGCHC	6 cut(s)	474, 535, 710, 1102, 1607, 2601
SfcI	CTRYAG	4 cut(s)	141, 247, 350, 2788
SfoI	GGCGCC	1 cut(s)	2028
SfuI	TTCGAA	1 cut(s)	215
SinI	GGWCC	2 cut(s)	1116, 1360
SmiMI	CAYNNNNRTG	4 cut(s)	972, 1223, 1280, 2606
SmlI	CTYRAG	4 cut(s)	5, 573, 1693, 2355
SmoI	CTYRAG	4 cut(s)	5, 573, 1693, 2355
SpeI	ACTAGT	1 cut(s)	365
SseBI	AGGCCT	1 cut(s)	2666
SsiI	CCGC	5 cut(s)	265, 1803, 2156, 2350, 2535
SspDI	GGCGCC	1 cut(s)	2026
SspI	AATATT	1 cut(s)	814
SstI	GAGCTC	1 cut(s)	1102
StuI	AGGCCT	1 cut(s)	2666
StyD4I	CCNGG	3 cut(s)	2000, 2298, 2395
StyI	CCWWGG	4 cut(s)	11, 1111, 2576, 2832
TaaI	ACNGT	6 cut(s)	450, 824, 859, 1448, 2707, 2777
TaiI	ACGT	2 cut(s)	1712, 2630
TaqI	TCGA	4 cut(s)	215, 1621, 1996, 2733
TaqII	GACCGA	1 cut(s)	3015
TatI	WGTACW	7 cut(s)	52, 251, 450, 1965, 2684, 2702, 2887
TfiI	GAWTC	6 cut(s)	404, 665, 905, 2122, 2855, 2921
Tru1I	TTAA	7 cut(s)	638, 720, 755, 1011, 1478, 1647, 1694
Tru9I	TTAA	7 cut(s)	638, 720, 755, 1011, 1478, 1647, 1694
TscAI	CASTG	8 cut(s)	326, 532, 1172, 1243, 1403, 1478, 2278, 2923
TseFI	GTSAC	3 cut(s)	764, 1905, 2144
TseI	GCWGC	7 cut(s)	140, 179, 267, 1985, 2513, 2516, 2955
Tsp45I	GTSAC	3 cut(s)	764, 1905, 2144
TspGWI	ACGGA	1 cut(s)	1092
TspRI	CASTG	8 cut(s)	326, 532, 1172, 1243, 1403, 1478, 2278, 2923
Vha464I	CTTAAG	1 cut(s)	1693
VpaK11BI	GGWCC	2 cut(s)	1116, 1360
VspI	ATTAAT	1 cut(s)	1647
XagI	CCTNNNNNAGG	2 cut(s)	1013, 2358
XapI	RAATTY	4 cut(s)	805, 1623, 1688, 2795
XbaI	TCTAGA	1 cut(s)	272
XceI	RCATGY	4 cut(s)	1580, 1966, 2113, 2245
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1661
XmaJI	CCTAGG	1 cut(s)	2576
XmnI	GAANNNNTTC	4 cut(s)	408, 2570, 2797, 2902
ZrmI	AGTACT	2 cut(s)	452, 2704
Zsp2I	ATGCAT	2 cut(s)	2206, 2991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.