Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0018904

Physical Location & Seq

Genomic Coordinates Reverse (-)

35303124 .. 35303469

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1220400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGCGGTTGCATCTTTTGCTGTTCATTTGCATCACTACAACAGTATTACTATTTTCCGCAGCCGAAGACTACGAAACAAGCACATTTCACTCCATTGCAGATGGTGAGACCCTAGTCTCAACTGGTGGAACCTTTGAGCTCGGATTTTTCATTCCCGACTCTTCCGAAAACCGATACGTGGGGATATGGTACAAGAAGATATCGGTTGGCAGAGATTTGATTACCCTGGTGACACATTCCTACGGGGTACAAAACTCGGCAGGAACACATTTACTTGCTTTGCTTGCAAAATATAGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04013 ko04071 ko04111 ko04113 ko04114 ko04136 ko04138 ko04140 ko04151 ko04152 ko04261 ko04350 ko04390 ko04391 ko04530 ko04728 ko04730 ko05142 ko05160 ko05165 map03015 map04013 map04071 map04111 map04113 map04114 map04136 map04138 map04140 map04151 map04152 map04261 map04350 map04390 map04391 map04530 map04728 map04730 map05142 map05160 map05165

Pfam Domains

Protein Families

Metallophos

Protein Analysis

101

Amino Acids

11.08

Weight (kDa)

5.68

Isoelectric Point (pI)

8.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018904)

Species	Orthologous Gene IDs
malus_domestica	MD05G1220400.v1.1 MD05G1231900.v1.1 MD05G1232600.v1.1 MD12G1047200.v1.1
pyrus_communis	pycom05g19770 pycom05g20310 pycom05g20350
rosa_chinensis	RchiOBHm_Chr3g0484821
rosa_samantha	Rh3DG293100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	4, 57
AfaI	GTAC	2 cut(s)	191, 249
AfiI	CCNNNNNNNGG	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	2 cut(s)	101, 121
ApeKI	GCWGC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	116, 241
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	101, 121
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	19, 39
BoxI	GACNNNNGTC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	127
Bse3DI	GCAATG	1 cut(s)	93
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	101, 121
Bso31I	GGTCTC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	141
BspACI	CCGC	2 cut(s)	4, 57
BspLI	GGNNCC	1 cut(s)	130
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstBAI	YACGTR	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	285
BstMAI	GTCTC	2 cut(s)	101, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 284
BstNI	CCWGG	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	190, 248
CviJI	RGCY	2 cut(s)	62, 139
CviKI_1	RGCY	2 cut(s)	62, 139
CviQI	GTAC	2 cut(s)	190, 248
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	141
FaiI	YATR	2 cut(s)	187, 294
Fnu4HI	GCNGC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	2 cut(s)	116, 241
Hpy188I	TCNGA	2 cut(s)	143, 166
Hpy188III	TCNNGA	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	4 cut(s)	10, 30, 98, 287
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 284
HpySE526I	ACGT	1 cut(s)	177
LpnPI	CCDG	4 cut(s)	108, 212, 239, 246
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	19, 39
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	229
MboII	GAAGA	3 cut(s)	77, 153, 208
MhlI	GDGCHC	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	16, 284
NlaIV	GGNNCC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	229
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Ppu21I	YACGTR	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	130
RsaI	GTAC	2 cut(s)	191, 249
RsaNI	GTAC	2 cut(s)	190, 248
SacI	GAGCTC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	60
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	3 cut(s)	134, 141, 180
SfaNI	GCATC	2 cut(s)	19, 39
SsiI	CCGC	2 cut(s)	4, 57
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	13, 139
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.