MD05G1231900.v1.1

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0018904
Physical Location & Seq
Forward (+)
36499273 .. 36499710
438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1231900.v1.1.491

Sequence Viewer

Length: 438 bp
ATGACCCAATTATTGAATGAAAGAAGCAGTTATGCAGCTTCTTCTCTCTTCGATTCCTCTGGTTTCTTTGACTTCGCTCTCATTTCGATAGATTACGTCTCTGTTGACATATCATATCTTTATACCACATTTCAGATCCCACCAAGGCAAAGAAAAATCCCAATTAACATGTGCTTGCATCTTTTGCTGCTCTTCCTCCTCGTCATTACTGCTGCAACATTTTCCACAGCACAAGTCAACGATGCAACCACATTTCAGTCAATTACATATGGTGAGACCATAATCTCAGATGGTGGCACCTTTGAGCTTGGTTTTTTCAGTCCCGATGCTTCAAATAAACGCTGCGTGGGGATATGGTACAAGAAGACATCGGATATGACCGTTGTTTGGGTAGCAAACCGGGACATTCCCCTCGCTGCTTCATCCGGTGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

146

Amino Acids

16.06

Weight (kDa)

4.86

Isoelectric Point (pI)

31.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018904)

Species Orthologous Gene IDs
malus_domestica MD05G1220400.v1.1 MD05G1231900.v1.1 MD05G1232600.v1.1 MD12G1047200.v1.1
pyrus_communis pycom05g19770 pycom05g20310 pycom05g20350
rosa_chinensis RchiOBHm_Chr3g0484821
rosa_samantha Rh3DG293100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AclWI GGATC 1 cut(s) 130
AfaI GTAC 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 387
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 2 cut(s) 16, 333
AluBI AGCT 2 cut(s) 38, 307
AluI AGCT 2 cut(s) 38, 307
Alw26I GTCTC 2 cut(s) 103, 269
AlwI GGATC 1 cut(s) 130
ApeKI GCWGC 5 cut(s) 35, 187, 212, 342, 416
AsuC2I CCSGG 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 284
BanI GGYRCC 1 cut(s) 296
BbsI GAAGAC 1 cut(s) 371
BbvI GCAGC 5 cut(s) 47, 174, 199, 329, 403
BccI CCATC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 103, 269
BfmI CTRYAG 1 cut(s) 434
BisI GCNGC 5 cut(s) 36, 188, 213, 343, 417
BlsI GCNGC 5 cut(s) 37, 189, 214, 344, 418
Bme1390I CCNGG 1 cut(s) 401
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 187, 232, 316
BpiI GAAGAC 1 cut(s) 371
BpuMI CCSGG 1 cut(s) 401
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 143
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 143
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 5 cut(s) 47, 174, 199, 329, 403
BshNI GGYRCC 1 cut(s) 296
BsiSI CCGG 2 cut(s) 400, 426
BslFI GGGAC 2 cut(s) 306, 416
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 2 cut(s) 103, 269
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 306, 416
Bso31I GGTCTC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 298
BspPI GGATC 1 cut(s) 130
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 296
BspTNI GGTCTC 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 143
BssMI GATC 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 382
Bst6I CTCTTC 2 cut(s) 53, 197
BstAPI GCANNNNNTGC 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 2 cut(s) 103, 269
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 1 cut(s) 434
BstV1I GCAGC 5 cut(s) 47, 174, 199, 329, 403
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 358
CviAII CATG 1 cut(s) 169
CviJI RGCY 2 cut(s) 38, 307
CviKI_1 RGCY 2 cut(s) 38, 307
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 53, 197
EarI CTCTTC 2 cut(s) 53, 197
Eco130I CCWWGG 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 269
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 172
FaqI GGGAC 2 cut(s) 306, 416
FatI CATG 1 cut(s) 168
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 5 cut(s) 36, 188, 213, 343, 417
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 5 cut(s) 36, 188, 213, 343, 417
GluI GCNGC 5 cut(s) 36, 188, 213, 343, 417
HapII CCGG 2 cut(s) 400, 426
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 2 cut(s) 106, 238
HindII GTYRAC 2 cut(s) 106, 238
HinfI GANTC 1 cut(s) 53
HpaII CCGG 2 cut(s) 400, 426
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 106, 238
Hpy188I TCNGA 3 cut(s) 135, 289, 373
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 2 cut(s) 106, 238
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 35, 178, 215, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 172
Kzo9I GATC 1 cut(s) 135
LguI GCTCTTC 1 cut(s) 197
LpnPI CCDG 2 cut(s) 45, 413
Lsp1109I GCAGC 5 cut(s) 47, 174, 199, 329, 403
LweI GCATC 3 cut(s) 187, 232, 316
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 4 cut(s) 33, 40, 184, 376
MflI RGATCY 1 cut(s) 135
MluCI AATT 3 cut(s) 8, 162, 261
MnlI CCTC 4 cut(s) 67, 206, 209, 422
MseI TTAA 1 cut(s) 165
MspI CCGG 2 cut(s) 400, 426
MspR9I CCNGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 401
NdeI CATATG 1 cut(s) 268
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 1 cut(s) 298
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 1 cut(s) 53
PkrI GCNGC 5 cut(s) 37, 189, 214, 344, 418
PscI ACATGT 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 135
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 5 cut(s) 36, 188, 213, 343, 417
Sau3AI GATC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 401
SetI ASST 4 cut(s) 40, 99, 302, 309
SfaNI GCATC 3 cut(s) 187, 232, 316
SfcI CTRYAG 1 cut(s) 434
Sse9I AATT 3 cut(s) 8, 162, 261
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 51, 86
TasI AATT 3 cut(s) 8, 162, 261
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 5 cut(s) 35, 187, 212, 342, 416
TspDTI ATGAA 2 cut(s) 33, 411
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.