Rh3DG293100

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0018904
Physical Location & Seq
Reverse (-)
30381389 .. 30387081
5693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG293100.1

Sequence Viewer

Length: 312 bp
ATGACGGCGAACTACTTCCCCACAGTAGTACAAGGAAAAGAAACATCTTTTGAAATAGCGAATGGCGAGACCATAGGTTCAACTGGGGGAACCTTTGAGCTTGGATTCTTCAGTCCCGGTTCTTCTACTACGCGATATGTAGGGATATGGTACAAGAAGCTATCAGTTACCACCATTTTGTGGGTTGCCAACAGAGACACACCCCTCACTAATTCATTAGATGTTCTCACGATCACACACCGCGGAATTCTTGTCCTTGTCAGCCAAAACAACAGCATAGTTTGGTCCTCCAACACATCAAAAACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

103

Amino Acids

11.19

Weight (kDa)

8.09

Isoelectric Point (pI)

15.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 58 - 101 1.8e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018904)

Species Orthologous Gene IDs
malus_domestica MD05G1220400.v1.1 MD05G1231900.v1.1 MD05G1232600.v1.1 MD12G1047200.v1.1
pyrus_communis pycom05g19770 pycom05g20310 pycom05g20350
rosa_chinensis RchiOBHm_Chr3g0484821
rosa_samantha Rh3DG293100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 180
AccII CGCG 2 cut(s) 133, 243
AciI CCGC 2 cut(s) 241, 243
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 94
AfaI GTAC 2 cut(s) 30, 152
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 53, 81
AluBI AGCT 2 cut(s) 100, 160
AluI AGCT 2 cut(s) 100, 160
Alw26I GTCTC 2 cut(s) 62, 189
ApoI RAATTY 1 cut(s) 246
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 117
AvaII GGWCC 1 cut(s) 285
BceAI ACGGC 1 cut(s) 21
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 2 cut(s) 62, 189
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 88
Bsh1236I CGCG 2 cut(s) 133, 243
BsiSI CCGG 1 cut(s) 117
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 62, 189
BsmFI GGGAC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 231
BspACI CCGC 2 cut(s) 241, 243
BspFNI CGCG 2 cut(s) 133, 243
BspLI GGNNCC 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 62
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 241
BstFNI CGCG 2 cut(s) 133, 243
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 2 cut(s) 62, 189
BstMBI GATC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 2 cut(s) 133, 243
BtgI CCRYGG 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 285
Cfr42I CCGCGG 1 cut(s) 244
Csp6I GTAC 2 cut(s) 29, 151
CviJI RGCY 3 cut(s) 100, 160, 264
CviKI_1 RGCY 3 cut(s) 100, 160, 264
CviQI GTAC 2 cut(s) 29, 151
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 94
EcoRI GAATTC 1 cut(s) 246
FaiI YATR 5 cut(s) 74, 138, 148, 278, 310
FaqI GGGAC 1 cut(s) 99
HapII CCGG 1 cut(s) 117
HinfI GANTC 1 cut(s) 105
HpaII CCGG 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4V TGCA 1 cut(s) 308
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 2 cut(s) 69, 130
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 100, 114
MluCI AATT 2 cut(s) 211, 246
MnlI CCTC 2 cut(s) 215, 298
MroXI GAANNNNTTC 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 117
MvnI CGCG 2 cut(s) 133, 243
NciI CCSGG 1 cut(s) 117
NdeII GATC 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 91
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 2 cut(s) 30, 152
RsaNI GTAC 2 cut(s) 29, 151
SacII CCGCGG 1 cut(s) 244
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 117
SetI ASST 4 cut(s) 79, 95, 102, 162
Sfr303I CCGCGG 1 cut(s) 244
SgrBI CCGCGG 1 cut(s) 244
SinI GGWCC 1 cut(s) 285
Sse9I AATT 2 cut(s) 211, 246
SsiI CCGC 2 cut(s) 241, 243
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 25
TasI AATT 2 cut(s) 211, 246
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 1 cut(s) 105
TspDTI ATGAA 1 cut(s) 204
Van91I CCANNNNNTGG 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.