RchiOBHm_Chr3g0484821

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
31297822 .. 31298124
303 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44951

Sequence Viewer

Length: 303 bp
ATGCATGATTATGATAGACTAAGGATTCCATTAATTGAAGGCTTTAAGATGCTATGCTTATTGCATCTGTTTTTCTTCTTTTCAGTATTCATCACAGTTACAACTTCCAAAGTAGATCATTCGAGTACATTTCAGTCCATTGCAGACGGCGAGACCATAGGTTCAACTGGTGGAACCCTTGAGCTTGGATTCTTCAGTCCCGGTTCTTCTACTACGCGATATGTGGGGATATGGTACAAGAAGATATCGGTCACCACCATTTTGTGGGTTGCAACAGAGACACACCCCTCACTGATTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

100

Amino Acids

11.25

Weight (kDa)

6.49

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018904)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 264
AccII CGCG 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 2 cut(s) 127, 236
AfiI CCNNNNNNNGG 1 cut(s) 264
AgsI TTSAA 2 cut(s) 38, 165
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 2 cut(s) 146, 272
AseI ATTAAT 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 244
BceAI ACGGC 1 cut(s) 163
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 146, 272
Bme1390I CCNGG 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 39, 73
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 264
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 172
Bsh1236I CGCG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 264
BsmAI GTCTC 2 cut(s) 146, 272
BsmFI GGGAC 1 cut(s) 183
Bso31I GGTCTC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 115
BspFNI CGCG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 172
BssMI GATC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 20
BstEII GGTNACC 1 cut(s) 250
BstFNI CGCG 1 cut(s) 217
BstKTI GATC 1 cut(s) 118
BstMAI GTCTC 2 cut(s) 146, 272
BstMBI GATC 1 cut(s) 115
BstPI GGTNACC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 199
BstUI CGCG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 290
Csp6I GTAC 2 cut(s) 126, 235
CviAII CATG 1 cut(s) 5
CviJI RGCY 2 cut(s) 42, 184
CviKI_1 RGCY 2 cut(s) 42, 184
CviQI GTAC 2 cut(s) 126, 235
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 146
Eco32I GATATC 1 cut(s) 246
Eco57I CTGAAG 1 cut(s) 178
Eco91I GGTNACC 1 cut(s) 250
EcoO65I GGTNACC 1 cut(s) 250
EcoRV GATATC 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 6 cut(s) 6, 12, 55, 158, 222, 232
FaqI GGGAC 1 cut(s) 183
FatI CATG 1 cut(s) 4
HapII CCGG 1 cut(s) 201
Hin1II CATG 1 cut(s) 8
HinfI GANTC 3 cut(s) 25, 189, 295
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 4, 64, 143, 272
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 1 cut(s) 8
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 2 cut(s) 153, 214
LweI GCATC 2 cut(s) 39, 73
MaeIII GTNAC 2 cut(s) 97, 250
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 4 cut(s) 67, 184, 198, 253
MluCI AATT 1 cut(s) 33
MnlI CCTC 1 cut(s) 298
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 32, 45
MslI CAYNNNNRTG 1 cut(s) 9
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 217
NciI CCSGG 1 cut(s) 201
NdeII GATC 1 cut(s) 115
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 3 cut(s) 25, 189, 295
PflMI CCANNNNNTGG 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 32
PspEI GGTNACC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 175
RsaI GTAC 2 cut(s) 127, 236
RsaNI GTAC 2 cut(s) 126, 235
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 32, 45
Sau3AI GATC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 201
SetI ASST 2 cut(s) 163, 186
SfaNI GCATC 2 cut(s) 39, 73
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 122
TaqII GACCGA 1 cut(s) 238
TasI AATT 1 cut(s) 33
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 3 cut(s) 25, 189, 295
Tru1I TTAA 2 cut(s) 32, 45
Tru9I TTAA 2 cut(s) 32, 45
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 250
Tsp45I GTSAC 1 cut(s) 250
TspDTI ATGAA 2 cut(s) 79, 287
TspRI CASTG 1 cut(s) 297
Van91I CCANNNNNTGG 1 cut(s) 264
VspI ATTAAT 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.