pycom05g20350

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0018904
Physical Location & Seq
Reverse (-)
23120949 .. 23121284
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20350.1

Sequence Viewer

Length: 336 bp
ATGTGCTTGCTTCTCTTCTACTCTTCTTTGCTGCTCATCTTCGCAGCAGTATTCTCCATAGCTGATGACGCCACAAGTACATTTCAGTCCATTAGAGACGGTGAGACTGTAGTTTCAACTGGCGGAACGTTTGAGCTAGGATTTTACAGTCCTGATGCTTCTAATAGACGGTACGTGGGGATATGGTACAAGAAGATATCTGTTACAACCATTGTATGGGTTGCCAACAGAGACAAACCCGTCACTGATTTGTCCGGCGTCCTGAAGGTCACCAACCTCGGAATTCTTGTCCTCAACCACAACATGAGCATAGTTTGGGCCTCCTATGTTGAATAA

Protein Analysis

112

Amino Acids

12.29

Weight (kDa)

5.7

Isoelectric Point (pI)

27.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 70 - 108 1.5e-09 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018904)

Species Orthologous Gene IDs
malus_domestica MD05G1220400.v1.1 MD05G1231900.v1.1 MD05G1232600.v1.1 MD12G1047200.v1.1
pyrus_communis pycom05g19770 pycom05g20310 pycom05g20350
rosa_chinensis RchiOBHm_Chr3g0484821
rosa_samantha Rh3DG293100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB7I CCANNNNNTGG 1 cut(s) 216
AciI CCGC 1 cut(s) 123
AclI AACGTT 1 cut(s) 128
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 284
AcyI GRCGYC 2 cut(s) 69, 258
AfaI GTAC 3 cut(s) 79, 173, 188
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 117, 332
AluBI AGCT 2 cut(s) 62, 136
AluI AGCT 2 cut(s) 62, 136
Alw26I GTCTC 3 cut(s) 90, 98, 225
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 2 cut(s) 31, 44
ApoI RAATTY 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 113, 262
BbvI GCAGC 2 cut(s) 18, 56
BcoDI GTCTC 3 cut(s) 90, 98, 225
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 108
BisI GCNGC 2 cut(s) 32, 45
BlsI GCNGC 2 cut(s) 33, 46
BmgT120I GGNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 145
BsaAI YACGTR 1 cut(s) 175
BsaHI GRCGYC 2 cut(s) 69, 258
BsaJI CCNNGG 1 cut(s) 277
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 277
BseLI CCNNNNNNNGG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 2 cut(s) 18, 56
BshFI GGCC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 216
BsmAI GTCTC 3 cut(s) 90, 98, 225
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 320
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 320
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 277
BssNI GRCGYC 2 cut(s) 69, 258
Bst4CI ACNGT 4 cut(s) 101, 109, 149, 171
Bst6I CTCTTC 2 cut(s) 20, 28
BstACI GRCGYC 2 cut(s) 69, 258
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 8
BstEII GGTNACC 1 cut(s) 268
BstMAI GTCTC 3 cut(s) 90, 98, 225
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstPI GGTNACC 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 18, 56
BsuRI GGCC 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 318
CseI GACGC 2 cut(s) 77, 247
Csp6I GTAC 3 cut(s) 78, 172, 187
CviAII CATG 1 cut(s) 304
CviJI RGCY 3 cut(s) 62, 136, 320
CviKI_1 RGCY 3 cut(s) 62, 136, 320
CviQI GTAC 3 cut(s) 78, 172, 187
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 2 cut(s) 20, 28
EarI CTCTTC 2 cut(s) 20, 28
EciI GGCGGA 1 cut(s) 138
Eco32I GATATC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 284
Eco91I GGTNACC 1 cut(s) 268
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 282
EcoRV GATATC 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 1 cut(s) 307
FaiI YATR 6 cut(s) 59, 184, 217, 305, 311, 327
FatI CATG 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 32, 45
Fsp4HI GCNGC 2 cut(s) 32, 45
FspBI CTAG 1 cut(s) 137
GluI GCNGC 2 cut(s) 32, 45
HaeIII GGCC 1 cut(s) 320
HapII CCGG 1 cut(s) 255
HgaI GACGC 2 cut(s) 77, 247
Hin1I GRCGYC 2 cut(s) 69, 258
Hin1II CATG 1 cut(s) 307
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 113, 262
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 152, 262
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 4 cut(s) 101, 109, 149, 171
HpyCH4IV ACGT 2 cut(s) 128, 174
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 2 cut(s) 128, 174
Hsp92I GRCGYC 2 cut(s) 69, 258
Hsp92II CATG 1 cut(s) 307
LpnPI CCDG 4 cut(s) 105, 165, 268, 275
Lsp1109I GCAGC 2 cut(s) 18, 56
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 137
MaeII ACGT 2 cut(s) 128, 174
MaeIII GTNAC 3 cut(s) 202, 241, 268
MboII GAAGA 4 cut(s) 7, 15, 31, 205
MluCI AATT 1 cut(s) 282
MnlI CCTC 3 cut(s) 287, 302, 331
MspI CCGG 1 cut(s) 255
MwoI GCNNNNNNNGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 2 cut(s) 241, 268
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 2 cut(s) 33, 46
Ppu21I YACGTR 1 cut(s) 175
Psp1406I AACGTT 1 cut(s) 128
PspEI GGTNACC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 318
RsaI GTAC 3 cut(s) 79, 173, 188
RsaNI GTAC 3 cut(s) 78, 172, 187
SatI GCNGC 2 cut(s) 32, 45
Sau96I GGNCC 1 cut(s) 318
SetI ASST 6 cut(s) 64, 131, 138, 177, 270, 279
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 282
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 137
TaaI ACNGT 4 cut(s) 101, 109, 149, 171
TaiI ACGT 2 cut(s) 131, 177
TasI AATT 1 cut(s) 282
TatI WGTACW 1 cut(s) 77
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 2 cut(s) 241, 268
TseI GCWGC 2 cut(s) 31, 44
Tsp45I GTSAC 2 cut(s) 241, 268
TspRI CASTG 1 cut(s) 250
Van91I CCANNNNNTGG 1 cut(s) 216
XapI RAATTY 1 cut(s) 282
XspI CTAG 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.