pycom05g19770

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0018904
Physical Location & Seq
Reverse (-)
22636532 .. 22636984
453 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19770.1

Sequence Viewer

Length: 453 bp
ATGCAAGCCTTGACAAGTTTTTTTATGTGCTCGTTCTTCTTATTCTCCCTCCTAAGAATCTCAGCTGCAACTGCACTTGTCACGATCACTCCGAGTGGATATATAAGAGATGGCGAAACTCTGGTTTCAGTAGGTGGAAGCTATGACCTGGGATTATTTAGCCCTGGTAAATCGAAAAGTCGGTACTTGGGAAGATGGTACAGTTTTTCTTCTGATGCAGTTGTGTGGGTAGCCAACAGAGGAACACCACTTGGTGATTCTTCAGGACTTTTGAAGCTCACCGAGCAAGGAGTTCTAGTCCTCCTGAATAGCTCAAACAGCATTGTGTGGTCATCGAATTCATCAAGAATTGCGGGGAATCCTATATCGCAACAAGACTCTAGATTAAGTGCTTCCACATTATCAGTGGAGTTGCTCGAGGGCTTCTTTATCTTCACCAAGACTCTAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

151

Amino Acids

16.18

Weight (kDa)

7.86

Isoelectric Point (pI)

32.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 123 1.9e-12 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018904)

Species Orthologous Gene IDs
malus_domestica MD05G1220400.v1.1 MD05G1231900.v1.1 MD05G1232600.v1.1 MD12G1047200.v1.1
pyrus_communis pycom05g19770 pycom05g20310 pycom05g20350
rosa_chinensis RchiOBHm_Chr3g0484821
rosa_samantha Rh3DG293100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 353
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 254
AfaI GTAC 2 cut(s) 185, 200
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 2 cut(s) 147, 163
AluBI AGCT 4 cut(s) 65, 141, 277, 312
AluI AGCT 4 cut(s) 65, 141, 277, 312
Alw21I GWGCWC 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 416
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 337
AsuHPI GGTGA 3 cut(s) 266, 271, 427
AvaI CYCGRG 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 104, 189
BciT130I CCWGG 2 cut(s) 149, 165
BfaI CTAG 3 cut(s) 296, 381, 446
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 149, 165
BmeT110I CYCGRG 1 cut(s) 416
BmrFI CCNGG 2 cut(s) 149, 165
BmsI GCATC 1 cut(s) 205
BsaJI CCNNGG 2 cut(s) 148, 163
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 282, 312
BseBI CCWGG 2 cut(s) 149, 165
BseDI CCNNGG 2 cut(s) 148, 163
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 32
BsiHKCI CYCGRG 1 cut(s) 416
BsoBI CYCGRG 1 cut(s) 416
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 84
BspACI CCGC 1 cut(s) 353
BspCNI CTCAG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 148, 163
BssMI GATC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 149, 165
Bst4CI ACNGT 1 cut(s) 203
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 53, 61
BstKTI GATC 1 cut(s) 87
BstMBI GATC 1 cut(s) 84
BstMWI GCNNNNNNNGC 3 cut(s) 71, 283, 318
BstNI CCWGG 2 cut(s) 149, 165
BstSCI CCNGG 2 cut(s) 147, 163
BstV1I GCAGC 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 2 cut(s) 184, 199
CviJI RGCY 8 cut(s) 8, 65, 141, 162, 233, 277, 312, 423
CviKI_1 RGCY 8 cut(s) 8, 65, 141, 162, 233, 277, 312, 423
CviQI GTAC 2 cut(s) 184, 199
DdeI CTNAG 2 cut(s) 53, 61
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
DraIII CACNNNGTG 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 246
Eco88I CYCGRG 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 147, 163
FaiI YATR 5 cut(s) 26, 102, 104, 144, 365
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 3 cut(s) 296, 381, 446
GluI GCNGC 1 cut(s) 66
HinfI GANTC 5 cut(s) 57, 257, 358, 377, 442
HphI GGTGA 3 cut(s) 266, 271, 427
Hpy188I TCNGA 2 cut(s) 93, 214
Hpy188III TCNNGA 6 cut(s) 82, 264, 304, 345, 381, 446
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 4, 68, 74, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 283, 318
HpyF3I CTNAG 2 cut(s) 53, 61
Kzo9I GATC 1 cut(s) 84
LpnPI CCDG 7 cut(s) 107, 134, 150, 161, 177, 249, 317
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 205
MaeI CTAG 3 cut(s) 296, 381, 446
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 5 cut(s) 28, 201, 204, 252, 424
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 2 cut(s) 337, 348
MlyI GAGTC 2 cut(s) 371, 436
MnlI CCTC 4 cut(s) 59, 233, 311, 412
MseI TTAA 2 cut(s) 386, 451
MspA1I CMGCKG 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 149, 165
MvaI CCWGG 2 cut(s) 149, 165
MwoI GCNNNNNNNGC 3 cut(s) 71, 283, 318
NdeII GATC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 79
PaeR7I CTCGAG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 89
PfeI GAWTC 3 cut(s) 57, 257, 358
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 2 cut(s) 371, 436
PpsI GAGTC 2 cut(s) 371, 436
Psp6I CCWGG 2 cut(s) 147, 163
PspGI CCWGG 2 cut(s) 147, 163
PspXI VCTCGAGB 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 2 cut(s) 185, 200
RsaNI GTAC 2 cut(s) 184, 199
SaqAI TTAA 2 cut(s) 386, 451
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 1 cut(s) 84
SchI GAGTC 2 cut(s) 371, 436
ScrFI CCNGG 2 cut(s) 149, 165
SduI GDGCHC 1 cut(s) 32
SetI ASST 6 cut(s) 67, 136, 143, 150, 279, 314
SfaNI GCATC 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 416
SlaI CTCGAG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 2 cut(s) 337, 348
SsiI CCGC 1 cut(s) 353
SspMI CTAG 3 cut(s) 296, 381, 446
StyD4I CCNGG 2 cut(s) 147, 163
TaaI ACNGT 1 cut(s) 203
TaqI TCGA 3 cut(s) 173, 335, 417
TasI AATT 2 cut(s) 337, 348
TfiI GAWTC 3 cut(s) 57, 257, 358
Tru1I TTAA 2 cut(s) 386, 451
Tru9I TTAA 2 cut(s) 386, 451
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 411
XapI RAATTY 1 cut(s) 337
XbaI TCTAGA 2 cut(s) 380, 445
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XhoI CTCGAG 1 cut(s) 416
XspI CTAG 3 cut(s) 296, 381, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.