Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016134

Physical Location & Seq

Genomic Coordinates Reverse (-)

37179840 .. 37185666

Gene Structure 5827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1241300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2358 bp

ATGAATCTCTTACCTCCTATACTTCGACCCATCTGCTACTTCACTCTCAAGCCCCCGTGGCGGCGCCATTTTAGCACCTGCTCGGAGGCCTCCGTCACTGCTAATGAGCTCTTCACAATCCTTGAAACAGCCAACGGTATTGAGGACGCCCTGGAACCCTTGGCCCCCAAGCTCTCCAGTGACGTAGTGAGATCTGTGATTCGAGAACGGGTGAACCCACAACTGGCTTTTCGTTTCTTCATCTGGGCAACCAATAGAATGAAGCTTTGCAGCCGAATGTCTCAGAATTCGGTGATTGACATGCTTGTCAGGGACGATGCCTTTGAACTCTATTGGAGAACGCTGGAGCAGATACGAGAATACGGGTTTCCGATTGGTTCTGATGCCTTTGCTGTGCTGATCAATGGCTATGACAAACTGGACAGGGTCGAAAAGGCTGTGGAGACGTTCGCCCGGATGAAAGATTTCGATTGTAAGCCTAATGTCTCTACTTACAATTCGATACTGCATGTTTTGGTGCGAAAAGAAGTGTTTTTGTTAGCTTTAGCTGTATATAACCAGATGTTGAAGTCGAATAATAGGCCTACTAGAAATACATATGCAATTTTGATTGATGGGTTTTGCAAGACAATGCAAACCCAGGACGCGCTCCGAATGTTTGACGAAATGACCCAGAGAGGCATGGCACCCAATACCGTAACTTATACTATTGTTGTTTCTGGCTTGTGCCAGGCAAAGAGGACCGATGAGGCTCATAGGTTGGTTAATATGATGAAGGGAAGTGGGTGCTCTCCAGATTTGATTACTTACCATGCTTTACTTGATGGTTATTGTAAGACAGGTAGAATTGGTGATGCTTATGCACTCCTCAGGTCATTTGAGAGGGATGGTTATGTTCTTGGACTCAATGGATATACTTGTTTGATTCAAGGTTTATTTAAAGCTAGGAGATTTGATGAAGCACATGGGTGGTATAGAAAAATGATCAAGGAGGGCATTGAGCTTGATAACGTCTTGTGTACCATAATAATTCAGGGATTATCAGATGCTGGCAGAGTTAATGATGCTTTGAGTTTCTTGAGTGAGATGAGCGAGAAAGGTTTGGTTCCAGATGCCTACTGTTATAATGCTGTCATTAAGGGGTTCTGTGATTTGGGTCTTTTGGACGAAGCTCGGTCTCTCCATCTTGAGGTCTCAAAGCAAGATTGCTTCCCTAATGCCTGCACATACACCATTCTCATTTGTGGTATGTGCAAGAACGGGCTGGTAGGGGAGGCGCAACAAATATTCAATGAGATGGAGAAGCTTGGATGTGTTCCTACTGTTGCAACCTTCAATGCTCTTATTGATGGACTTTGTAAGGCTTCTCTGCTTGACGAAGCACACTTACTATTCTACAAGATGGAGATAGGACGAAACCCTTCATTATTTCTTCGTCTTTCTCAAGGAGTTGATCGGGTTACCGATAGTACCAGTCTTCAAACAAAAGTTGAGCAATTGTGTGAGTCAGGATTGATTCTTCAGGCCTACAAACTTCTAATGAAGCTAGCTAATAGTGGGGTTACGCCTGACATCATCACTTACAACATTCTAATCAATGGGTTTTGCAAGGATGGTAACATAAATGGTGCTTTTAAGCTCTTCAAGGATATGCAACTGAAAGGGCTCTCCCCAGATTCTGTTACATATGGAACGCTTATAGATGGACTTCAAAGGGTTGACAGAGAAGAGGATGCCTTCGTGGTCTTTGACCAAATGGTGAAGAATGGGTGCATGCCTAGCTCTGCAGTTTACAAAGCACTGATGACTTGGTCTTGCAGAAAACAGAAGGTTTCTTTGGCTTTTAGTCTTTGGTTGAAGTATCTGAGAAACCTTCCTAGCAGAGAAGAGGAAGAAATTAAAGAAATAGAGGAGAACTTTAAGGAAGGAAAAATTGAGAAGGCAATCAGAGGCTTGCTTGAAATGGATATAAAGTTCAAAGAGTTTAATTTAGCACCATGCACCATTTTGCTTATTGGTATGTGTCAGGTGAGAAGAGTACATGAAGCTTTGAGAATATTTTCTGTTCTTGATGAGTACAAAGTCACTGTCACTCCACCAAGTTGTGTGCACTTGATCAGTGGTCTCTGCAAAGAAGGGAATTTGGACCTGGCAATAGGTGTTTTCATTTATACTCTGGAGAAGGGTTTTATGTTAATGCCAGAAATATGCAACACGCTGCTCAAATGTCTTCTTCGTTCCCAAGACAAAAAGGATCATGCCCTTGACCTCGTTAGCAGGATGAGATCTTTAGGATATGATCTCGATTCTTATCTTCAGCAAACTACAAAATTTCTTCTACAATGTCACGGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

786

Amino Acids

88.83

Weight (kDa)

6.83

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	130 - 173	1.1e-08	PPR repeat family
PPR_3	PF13812	133 - 173	7.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	160 - 209	5.2e-13	PPR repeat family
TPR_24	PF23276	167 - 291	1.4e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	181 - 289	3.7e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	195 - 224	4.9e-07	PPR repeat
PPR_2	PF13041	203 - 244	2.8e-13	PPR repeat family
PPR_3	PF13812	218 - 277	2.7e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	226 - 259	2.6e-10	PPR repeat
PPR	PF01535	233 - 263	3.1e-06	PPR repeat
PPR_2	PF13041	239 - 279	1.7e-10	PPR repeat family
PPR_1	PF12854	262 - 291	5.6e-09	PPR repeat
PPR_2	PF13041	305 - 338	7.6e-06	PPR repeat family
PPR_2	PF13041	336 - 384	6.8e-13	PPR repeat family
PPR_1	PF12854	366 - 393	1.9e-07	PPR repeat
PPR_2	PF13041	370 - 419	9.3e-13	PPR repeat family
PPR_3	PF13812	397 - 450	1.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	402 - 434	3.2e-13	PPR repeat
PPR_2	PF13041	405 - 454	8e-18	PPR repeat family
PPR	PF01535	409 - 438	2.6e-08	PPR repeat
PPR_1	PF12854	437 - 469	1.9e-10	PPR repeat
PPR_2	PF13041	500 - 537	5.9e-09	PPR repeat family
PPR_3	PF13812	512 - 567	5.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	520 - 552	8.5e-15	PPR repeat
PPR_2	PF13041	523 - 570	1e-19	PPR repeat family
PPR	PF01535	526 - 556	5.5e-09	PPR repeat
PPR_3	PF13812	546 - 603	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	554 - 587	7.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79540
fragaria_vesca	FvH4_3g13661
malus_domestica	MD05G1241300.v1.1
prunus_persica	Prupe.4G124200_v2.0.a1 Prupe.4G124200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022901
rosa_laevigata	RLG00000032681
rosa_multiflora	Rmu_co8399345.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056430
rosa_rugosa	Rorug05G0075400
rosa_samantha	Rh5AG161900 Rh5BG161100 Rh5CG175600 Rh5DG162300
rosa_wichuraiana	Rw5G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1125
AarI	CACCTGC	1 cut(s)	86
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	2 cut(s)	63, 685
AccII	CGCG	1 cut(s)	647
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	1 cut(s)	2262
AcsI	RAATTY	3 cut(s)	286, 2140, 2330
AcuI	CTGAAG	2 cut(s)	1505, 2300
AcyI	GRCGYC	2 cut(s)	64, 147
AfaI	GTAC	4 cut(s)	1021, 1471, 2040, 2078
AfiI	CCNNNNNNNGG	3 cut(s)	60, 223, 1189
AjnI	CCWGG	4 cut(s)	150, 639, 729, 2148
AjuI	GAANNNNNNNTTGG	2 cut(s)	1820, 1852
AleI	CACNNNNGTG	1 cut(s)	967
AloI	GAACNNNNNNTCC	2 cut(s)	1958, 1990
Alw21I	GWGCWC	3 cut(s)	111, 791, 2112
Alw26I	GTCTC	6 cut(s)	285, 437, 490, 1182, 1198, 2129
Alw44I	GTGCAC	1 cut(s)	2108
AlwI	GGATC	1 cut(s)	2262
AlwNI	CAGNNNCTG	2 cut(s)	1049, 1679
AoxI	GGCC	4 cut(s)	87, 162, 581, 1524
ApaLI	GTGCAC	1 cut(s)	2108
ApeKI	GCWGC	2 cut(s)	270, 2218
ApoI	RAATTY	3 cut(s)	286, 2140, 2330
ArsI	GACNNNNNNTTYG	4 cut(s)	305, 337, 2073, 2105
Asp700I	GAANNNNTTC	3 cut(s)	464, 1420, 2059
AspLEI	GCGC	3 cut(s)	66, 649, 1279
AspS9I	GGNCC	3 cut(s)	163, 741, 2146
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	5 cut(s)	223, 304, 863, 1771, 2041
AsuNHI	GCTAGC	1 cut(s)	1546
AvaII	GGWCC	2 cut(s)	741, 2146
AxyI	CCTNAGG	1 cut(s)	869
BaeGI	GKGCMC	1 cut(s)	2112
BanI	GGYRCC	2 cut(s)	63, 685
BanII	GRGCYC	2 cut(s)	111, 1668
BarI	GAAGNNNNNNTAC	2 cut(s)	1371, 1403
BbsI	GAAGAC	2 cut(s)	1469, 2222
Bbv12I	GWGCWC	3 cut(s)	111, 791, 2112
BbvI	GCAGC	2 cut(s)	282, 2205
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	4 cut(s)	152, 641, 731, 2150
BclI	TGATCA	3 cut(s)	399, 984, 2115
BcnI	CCSGG	1 cut(s)	454
BcoDI	GTCTC	6 cut(s)	285, 437, 490, 1182, 1198, 2129
BfaI	CTAG	5 cut(s)	588, 945, 1547, 1779, 1878
BfmI	CTRYAG	1 cut(s)	1785
BfoI	RGCGCY	1 cut(s)	67
BfuAI	ACCTGC	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	58
BglII	AGATCT	2 cut(s)	191, 2285
BisI	GCNGC	3 cut(s)	62, 271, 2219
BlsI	GCNGC	3 cut(s)	63, 272, 2220
Bme1390I	CCNGG	5 cut(s)	152, 454, 641, 731, 2150
Bme18I	GGWCC	2 cut(s)	741, 2146
BmgT120I	GGNCC	3 cut(s)	163, 741, 2146
BmiI	GGNNCC	5 cut(s)	65, 156, 165, 687, 1107
BmrFI	CCNGG	5 cut(s)	152, 454, 641, 731, 2150
BmsI	GCATC	7 cut(s)	307, 373, 844, 1036, 1054, 1102, 1723
BmtI	GCTAGC	1 cut(s)	1550
BpiI	GAAGAC	2 cut(s)	1469, 2222
BpmI	CTGGAG	4 cut(s)	160, 365, 777, 2198
BpuEI	CTTGAG	4 cut(s)	32, 1099, 1208, 1428
BpuMI	CCSGG	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	2310
BsaHI	GRCGYC	2 cut(s)	64, 147
BsaI	GGTCTC	3 cut(s)	1182, 1198, 2129
BsaJI	CCNNGG	4 cut(s)	56, 150, 159, 639
BsaXI	ACNNNNNCTCC	2 cut(s)	2077, 2107
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 223, 1189
Bse1I	ACTGG	4 cut(s)	177, 228, 423, 1473
Bse21I	CCTNAGG	1 cut(s)	869
Bse8I	GATNNNNATC	1 cut(s)	2310
BseBI	CCWGG	4 cut(s)	152, 641, 731, 2150
BseDI	CCNNGG	4 cut(s)	56, 150, 159, 639
BseGI	GGATG	6 cut(s)	462, 892, 1316, 1618, 1738, 2286
BseJI	GATNNNNATC	1 cut(s)	2310
BseLI	CCNNNNNNNGG	3 cut(s)	60, 223, 1189
BseMII	CTCAG	3 cut(s)	296, 883, 1856
BseNI	ACTGG	4 cut(s)	177, 228, 423, 1473
BseRI	GAGGAG	2 cut(s)	857, 1925
BseSI	GKGCMC	1 cut(s)	2112
BseXI	GCAGC	2 cut(s)	282, 2205
BsgI	GTGCAG	1 cut(s)	1207
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	4 cut(s)	89, 164, 583, 1526
BshNI	GGYRCC	2 cut(s)	63, 685
BsiHKAI	GWGCWC	3 cut(s)	111, 791, 2112
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	60, 223, 1189
BsmAI	GTCTC	6 cut(s)	285, 437, 490, 1182, 1198, 2129
BsmBI	CGTCTC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	4 cut(s)	89, 164, 583, 1526
Bso31I	GGTCTC	3 cut(s)	1182, 1198, 2129
Bsp1286I	GDGCHC	4 cut(s)	111, 791, 1668, 2112
Bsp143I	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	4 cut(s)	89, 164, 583, 1526
BspCNI	CTCAG	3 cut(s)	295, 882, 1857
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	5 cut(s)	65, 156, 165, 687, 1107
BspMAI	CTGCAG	1 cut(s)	1789
BspMI	ACCTGC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	1550
BspPI	GGATC	1 cut(s)	2262
BspQI	GCTCTTC	2 cut(s)	116, 1646
BspT107I	GGYRCC	2 cut(s)	63, 685
BspTNI	GGTCTC	3 cut(s)	1182, 1198, 2129
BsrI	ACTGG	4 cut(s)	177, 228, 423, 1473
BssECI	CCNNGG	4 cut(s)	56, 150, 159, 639
BssMI	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
BssNI	GRCGYC	2 cut(s)	64, 147
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	4 cut(s)	152, 641, 731, 2150
Bst4CI	ACNGT	5 cut(s)	137, 697, 1121, 1324, 2089
Bst6I	CTCTTC	5 cut(s)	116, 1646, 1722, 1881, 2029
BstACI	GRCGYC	2 cut(s)	64, 147
BstC8I	GCNNGC	5 cut(s)	1051, 1222, 1548, 1775, 1955
BstDEI	CTNAG	3 cut(s)	282, 869, 1865
BstDSI	CCRYGG	1 cut(s)	56
BstEII	GGTNACC	1 cut(s)	1459
BstF5I	GGATG	6 cut(s)	462, 892, 1316, 1618, 1738, 2286
BstFNI	CGCG	1 cut(s)	647
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	3 cut(s)	66, 649, 1279
BstKTI	GATC	8 cut(s)	194, 402, 987, 1456, 2118, 2257, 2288, 2302
BstMAI	GTCTC	6 cut(s)	285, 437, 490, 1182, 1198, 2129
BstMBI	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 72, 1779
BstNI	CCWGG	4 cut(s)	152, 641, 731, 2150
BstNSI	RCATGY	3 cut(s)	304, 512, 1777
BstPI	GGTNACC	1 cut(s)	1459
BstSCI	CCNGG	5 cut(s)	150, 452, 639, 729, 2148
BstSFI	CTRYAG	1 cut(s)	1785
BstSLI	GKGCMC	1 cut(s)	2112
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	2 cut(s)	282, 2205
BstV2I	GAAGAC	2 cut(s)	1469, 2222
BstX2I	RGATCY	2 cut(s)	191, 2285
BstYI	RGATCY	2 cut(s)	191, 2285
Bsu36I	CCTNAGG	1 cut(s)	869
BsuRI	GGCC	4 cut(s)	89, 164, 583, 1526
BtgI	CCRYGG	1 cut(s)	56
BtsCI	GGATG	6 cut(s)	462, 892, 1316, 1618, 1738, 2286
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	5 cut(s)	96, 184, 1799, 2085, 2125
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	5 cut(s)	1051, 1222, 1548, 1775, 1955
CaiI	CAGNNNCTG	2 cut(s)	1049, 1679
CfoI	GCGC	3 cut(s)	66, 649, 1279
Cfr13I	GGNCC	3 cut(s)	163, 741, 2146
CseI	GACGC	2 cut(s)	155, 653
Csp6I	GTAC	4 cut(s)	1020, 1470, 2039, 2077
CviAII	CATG	9 cut(s)	301, 509, 682, 812, 965, 1774, 1998, 2042, 2258
CviQI	GTAC	4 cut(s)	1020, 1470, 2039, 2077
DdeI	CTNAG	3 cut(s)	282, 869, 1865
DinI	GGCGCC	1 cut(s)	65
DpnI	GATC	8 cut(s)	193, 401, 986, 1455, 2117, 2256, 2287, 2301
DpnII	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
DraI	TTTAAA	1 cut(s)	940
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
Eam1104I	CTCTTC	5 cut(s)	116, 1646, 1722, 1881, 2029
EarI	CTCTTC	5 cut(s)	116, 1646, 1722, 1881, 2029
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	159
Eco147I	AGGCCT	3 cut(s)	89, 583, 1526
Eco24I	GRGCYC	2 cut(s)	111, 1668
Eco31I	GGTCTC	3 cut(s)	1182, 1198, 2129
Eco47I	GGWCC	2 cut(s)	741, 2146
Eco53kI	GAGCTC	1 cut(s)	109
Eco57I	CTGAAG	2 cut(s)	1505, 2300
Eco81I	CCTNAGG	1 cut(s)	869
Eco91I	GGTNACC	1 cut(s)	1459
EcoICRI	GAGCTC	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	1459
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	4 cut(s)	150, 639, 729, 2148
EcoT14I	CCWWGG	1 cut(s)	159
EcoT38I	GRGCYC	2 cut(s)	111, 1668
EgeI	GGCGCC	1 cut(s)	65
EheI	GGCGCC	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	437
FaeI	CATG	9 cut(s)	304, 512, 685, 815, 968, 1777, 2001, 2045, 2261
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	9 cut(s)	300, 508, 681, 811, 964, 1773, 1997, 2041, 2257
FauNDI	CATATG	2 cut(s)	598, 1687
FbaI	TGATCA	3 cut(s)	399, 984, 2115
Fnu4HI	GCNGC	3 cut(s)	62, 271, 2219
FokI	GGATG	6 cut(s)	469, 899, 1323, 1625, 1745, 2293
FriOI	GRGCYC	2 cut(s)	111, 1668
Fsp4HI	GCNGC	3 cut(s)	62, 271, 2219
FspBI	CTAG	5 cut(s)	588, 945, 1547, 1779, 1878
GlaI	GCGC	3 cut(s)	65, 648, 1278
GluI	GCNGC	3 cut(s)	62, 271, 2219
GsuI	CTGGAG	4 cut(s)	160, 365, 777, 2198
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	4 cut(s)	89, 164, 583, 1526
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	2 cut(s)	155, 653
HhaI	GCGC	3 cut(s)	66, 649, 1279
Hin1I	GRCGYC	2 cut(s)	64, 147
Hin1II	CATG	9 cut(s)	304, 512, 685, 815, 968, 1777, 2001, 2045, 2261
Hin6I	GCGC	3 cut(s)	64, 647, 1277
HinP1I	GCGC	3 cut(s)	64, 647, 1277
HincII	GTYRAC	1 cut(s)	1720
HindII	GTYRAC	1 cut(s)	1720
HindIII	AAGCTT	3 cut(s)	263, 1304, 2046
HinfI	GANTC	8 cut(s)	4, 199, 903, 925, 1505, 1516, 1676, 2306
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	5 cut(s)	223, 304, 863, 1771, 2041
Hpy166II	GTNNAC	5 cut(s)	214, 1020, 1720, 1792, 2110
Hpy188I	TCNGA	8 cut(s)	85, 285, 372, 382, 653, 1045, 1866, 1949
Hpy188III	TCNNGA	9 cut(s)	203, 794, 1078, 1109, 1187, 1509, 2069, 2177, 2303
Hpy8I	GTNNAC	5 cut(s)	214, 1020, 1720, 1792, 2110
HpyCH4III	ACNGT	5 cut(s)	137, 697, 1121, 1324, 2089
HpyCH4IV	ACGT	3 cut(s)	183, 446, 1011
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 72, 1779
HpyF3I	CTNAG	3 cut(s)	282, 869, 1865
HpySE526I	ACGT	3 cut(s)	183, 446, 1011
Hsp92I	GRCGYC	2 cut(s)	64, 147
Hsp92II	CATG	9 cut(s)	304, 512, 685, 815, 968, 1777, 2001, 2045, 2261
HspAI	GCGC	3 cut(s)	64, 647, 1277
KasI	GGCGCC	1 cut(s)	63
Ksp22I	TGATCA	3 cut(s)	399, 984, 2115
Kzo9I	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
LguI	GCTCTTC	2 cut(s)	116, 1646
LmnI	GCTCC	2 cut(s)	346, 654
Lsp1109I	GCAGC	2 cut(s)	282, 2205
LweI	GCATC	7 cut(s)	307, 373, 844, 1036, 1054, 1102, 1723
MaeI	CTAG	5 cut(s)	588, 945, 1547, 1779, 1878
MaeII	ACGT	3 cut(s)	183, 446, 1011
MalI	GATC	8 cut(s)	193, 401, 986, 1455, 2117, 2256, 2287, 2301
MboI	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
MfeI	CAATTG	1 cut(s)	1496
MflI	RGATCY	2 cut(s)	191, 2285
MhlI	GDGCHC	4 cut(s)	111, 791, 1668, 2112
Mly113I	GGCGCC	1 cut(s)	64
MlyI	GAGTC	2 cut(s)	897, 1514
MroXI	GAANNNNTTC	3 cut(s)	464, 1420, 2059
MseI	TTAA	9 cut(s)	765, 939, 1059, 1137, 1635, 1899, 1920, 1986, 2195
MslI	CAYNNNNRTG	1 cut(s)	967
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	5 cut(s)	152, 454, 641, 731, 2150
MunI	CAATTG	1 cut(s)	1496
MvaI	CCWGG	4 cut(s)	152, 641, 731, 2150
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	3 cut(s)	58, 72, 1779
NarI	GGCGCC	1 cut(s)	64
NciI	CCSGG	1 cut(s)	454
NdeI	CATATG	2 cut(s)	598, 1687
NdeII	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
NheI	GCTAGC	1 cut(s)	1546
NlaIII	CATG	9 cut(s)	304, 512, 685, 815, 968, 1777, 2001, 2045, 2261
NlaIV	GGNNCC	5 cut(s)	65, 156, 165, 687, 1107
NmuCI	GTSAC	5 cut(s)	94, 179, 2083, 2089, 2345
NspI	RCATGY	3 cut(s)	304, 512, 1777
OliI	CACNNNNGTG	1 cut(s)	967
PaeI	GCATGC	1 cut(s)	1777
PaqCI	CACCTGC	1 cut(s)	86
PceI	AGGCCT	3 cut(s)	89, 583, 1526
PciSI	GCTCTTC	2 cut(s)	116, 1646
PdmI	GAANNNNTTC	3 cut(s)	464, 1420, 2059
PfeI	GAWTC	6 cut(s)	4, 199, 925, 1516, 1676, 2306
PflFI	GACNNNGTC	2 cut(s)	425, 1810
PkrI	GCNGC	3 cut(s)	63, 272, 2220
PleI	GAGTC	2 cut(s)	897, 1513
PluTI	GGCGCC	1 cut(s)	67
PpsI	GAGTC	2 cut(s)	897, 1513
PsiI	TTATAA	1 cut(s)	1125
Psp124BI	GAGCTC	1 cut(s)	111
Psp6I	CCWGG	4 cut(s)	150, 639, 729, 2148
PspEI	GGTNACC	1 cut(s)	1459
PspGI	CCWGG	4 cut(s)	150, 639, 729, 2148
PspN4I	GGNNCC	5 cut(s)	65, 156, 165, 687, 1107
PspPI	GGNCC	3 cut(s)	163, 741, 2146
PstI	CTGCAG	1 cut(s)	1789
PstNI	CAGNNNCTG	2 cut(s)	1049, 1679
PsuI	RGATCY	2 cut(s)	191, 2285
PsyI	GACNNNGTC	2 cut(s)	425, 1810
RsaI	GTAC	4 cut(s)	1021, 1471, 2040, 2078
RsaNI	GTAC	4 cut(s)	1020, 1470, 2039, 2077
RseI	CAYNNNNRTG	1 cut(s)	967
SacI	GAGCTC	1 cut(s)	111
SapI	GCTCTTC	2 cut(s)	116, 1646
SaqAI	TTAA	9 cut(s)	765, 939, 1059, 1137, 1635, 1899, 1920, 1986, 2195
SatI	GCNGC	3 cut(s)	62, 271, 2219
Sau3AI	GATC	8 cut(s)	191, 399, 984, 1453, 2115, 2254, 2285, 2299
Sau96I	GGNCC	3 cut(s)	163, 741, 2146
SchI	GAGTC	2 cut(s)	897, 1514
ScrFI	CCNGG	5 cut(s)	152, 454, 641, 731, 2150
SduI	GDGCHC	4 cut(s)	111, 791, 1668, 2112
SfaNI	GCATC	7 cut(s)	307, 373, 844, 1036, 1054, 1102, 1723
SfcI	CTRYAG	1 cut(s)	1785
SfoI	GGCGCC	1 cut(s)	65
SinI	GGWCC	2 cut(s)	741, 2146
SmiMI	CAYNNNNRTG	1 cut(s)	967
SmlI	CTYRAG	4 cut(s)	47, 1078, 1187, 1443
SmoI	CTYRAG	4 cut(s)	47, 1078, 1187, 1443
SphI	GCATGC	1 cut(s)	1777
SseBI	AGGCCT	3 cut(s)	89, 583, 1526
SsiI	CCGC	1 cut(s)	61
SspDI	GGCGCC	1 cut(s)	63
SspI	AATATT	2 cut(s)	1287, 2058
SspMI	CTAG	5 cut(s)	588, 945, 1547, 1779, 1878
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	3 cut(s)	89, 583, 1526
StyD4I	CCNGG	5 cut(s)	150, 452, 639, 729, 2148
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	5 cut(s)	137, 697, 1121, 1324, 2089
TaiI	ACGT	3 cut(s)	186, 449, 1014
TaqI	TCGA	7 cut(s)	25, 202, 429, 468, 500, 572, 2304
TaqII	GACCGA	2 cut(s)	758, 1164
TatI	WGTACW	2 cut(s)	2038, 2076
TauI	GCSGC	1 cut(s)	64
TfiI	GAWTC	6 cut(s)	4, 199, 925, 1516, 1676, 2306
Tru1I	TTAA	9 cut(s)	765, 939, 1059, 1137, 1635, 1899, 1920, 1986, 2195
Tru9I	TTAA	9 cut(s)	765, 939, 1059, 1137, 1635, 1899, 1920, 1986, 2195
TscAI	CASTG	5 cut(s)	103, 184, 1806, 2092, 2125
TseFI	GTSAC	5 cut(s)	94, 179, 2083, 2089, 2345
TseI	GCWGC	2 cut(s)	270, 2218
Tsp45I	GTSAC	5 cut(s)	94, 179, 2083, 2089, 2345
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	5 cut(s)	103, 184, 1806, 2092, 2125
Tth111I	GACNNNGTC	2 cut(s)	425, 1810
VneI	GTGCAC	1 cut(s)	2108
VpaK11BI	GGWCC	2 cut(s)	741, 2146
XapI	RAATTY	3 cut(s)	286, 2140, 2330
XceI	RCATGY	3 cut(s)	304, 512, 1777
XmnI	GAANNNNTTC	3 cut(s)	464, 1420, 2059
XspI	CTAG	5 cut(s)	588, 945, 1547, 1779, 1878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.