Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79540 |
| fragaria_vesca | FvH4_3g13661 |
| malus_domestica | MD05G1241300.v1.1 |
| prunus_persica | Prupe.4G124200_v2.0.a1 Prupe.4G124200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr5g0022901 |
| rosa_laevigata | RLG00000032681 |
| rosa_multiflora | Rmu_co8399345.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00056430 |
| rosa_rugosa | Rorug05G0075400 |
| rosa_samantha | Rh5AG161900 Rh5BG161100 Rh5CG175600 Rh5DG162300 |
| rosa_wichuraiana | Rw5G014570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1125, 1794 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 305 |
| AccI | GTMKAC | 1 cut(s) | 755 |
| AccII | CGCG | 1 cut(s) | 647 |
| AciI | CCGC | 1 cut(s) | 363 |
| AclWI | GGATC | 2 cut(s) | 193, 2262 |
| AcsI | RAATTY | 2 cut(s) | 1072, 2330 |
| AcyI | GRCGYC | 1 cut(s) | 61 |
| AfaI | GTAC | 5 cut(s) | 1021, 1995, 2040, 2078, 2109 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 223 |
| AflII | CTTAAG | 1 cut(s) | 1520 |
| AjnI | CCWGG | 2 cut(s) | 729, 2148 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 147, 179 |
| Alw26I | GTCTC | 5 cut(s) | 285, 351, 437, 1182, 2129 |
| AlwI | GGATC | 2 cut(s) | 193, 2262 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1049 |
| AoxI | GGCC | 1 cut(s) | 1524 |
| ApeKI | GCWGC | 5 cut(s) | 270, 383, 843, 1543, 2218 |
| ApoI | RAATTY | 2 cut(s) | 1072, 2330 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 305, 337, 2073, 2105 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 464, 617, 1420, 2059, 2186 |
| AspLEI | GCGC | 4 cut(s) | 649, 865, 1279, 1384 |
| AspS9I | GGNCC | 3 cut(s) | 109, 741, 2146 |
| AsuHPI | GGTGA | 5 cut(s) | 106, 863, 1662, 1771, 2041 |
| AsuNHI | GCTAGC | 2 cut(s) | 538, 1546 |
| AvaII | GGWCC | 3 cut(s) | 109, 741, 2146 |
| BanII | GRGCYC | 1 cut(s) | 1668 |
| BbsI | GAAGAC | 4 cut(s) | 1469, 1920, 2155, 2222 |
| BbvI | GCAGC | 5 cut(s) | 282, 370, 855, 1555, 2205 |
| BccI | CCATC | 8 cut(s) | 38, 125, 818, 881, 1291, 1343, 1396, 1697 |
| BciT130I | CCWGG | 2 cut(s) | 731, 2150 |
| BclI | TGATCA | 4 cut(s) | 399, 984, 1750, 2115 |
| BcoDI | GTCTC | 5 cut(s) | 285, 351, 437, 1182, 2129 |
| BfaI | CTAG | 5 cut(s) | 539, 1202, 1547, 1779, 2339 |
| BfmI | CTRYAG | 1 cut(s) | 1785 |
| BfrI | CTTAAG | 1 cut(s) | 1520 |
| BglII | AGATCT | 1 cut(s) | 2285 |
| BisI | GCNGC | 5 cut(s) | 271, 384, 844, 1544, 2219 |
| BlsI | GCNGC | 5 cut(s) | 272, 385, 845, 1545, 2220 |
| Bme1390I | CCNGG | 2 cut(s) | 731, 2150 |
| Bme18I | GGWCC | 3 cut(s) | 109, 741, 2146 |
| BmgT120I | GGNCC | 3 cut(s) | 109, 741, 2146 |
| BmiI | GGNNCC | 3 cut(s) | 156, 743, 1107 |
| BmrFI | CCNGG | 2 cut(s) | 731, 2150 |
| BmrI | ACTGGG | 1 cut(s) | 579 |
| BmsI | GCATC | 8 cut(s) | 307, 1005, 1036, 1054, 1102, 1723, 1760, 2187 |
| BmtI | GCTAGC | 2 cut(s) | 542, 1550 |
| BmuI | ACTGGG | 1 cut(s) | 579 |
| BpiI | GAAGAC | 4 cut(s) | 1469, 1920, 2155, 2222 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 622, 654 |
| BpmI | CTGGAG | 2 cut(s) | 160, 2198 |
| BpuEI | CTTGAG | 4 cut(s) | 889, 1394, 1428, 2207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2310 |
| BsaHI | GRCGYC | 1 cut(s) | 61 |
| BsaI | GGTCTC | 2 cut(s) | 1182, 2129 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 150 |
| BsaWI | WCCGGW | 1 cut(s) | 231 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 223 |
| Bse1I | ACTGG | 4 cut(s) | 177, 585, 1473, 1962 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2310 |
| BseBI | CCWGG | 2 cut(s) | 731, 2150 |
| BseDI | CCNNGG | 2 cut(s) | 56, 150 |
| BseJI | GATNNNNATC | 1 cut(s) | 2310 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BseMII | CTCAG | 5 cut(s) | 296, 344, 653, 1871, 1926 |
| BseNI | ACTGG | 4 cut(s) | 177, 585, 1473, 1962 |
| BseXI | GCAGC | 5 cut(s) | 282, 370, 855, 1555, 2205 |
| BseYI | CCCAGC | 1 cut(s) | 944 |
| BsgI | GTGCAG | 3 cut(s) | 1207, 1984, 2300 |
| Bsh1236I | CGCG | 1 cut(s) | 647 |
| BshFI | GGCC | 1 cut(s) | 1526 |
| BsiSI | CCGG | 1 cut(s) | 232 |
| BslFI | GGGAC | 5 cut(s) | 149, 326, 567, 1301, 1705 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 223 |
| BsmAI | GTCTC | 5 cut(s) | 285, 351, 437, 1182, 2129 |
| BsmFI | GGGAC | 5 cut(s) | 149, 326, 567, 1301, 1705 |
| BsmI | GAATGC | 1 cut(s) | 2348 |
| BsnI | GGCC | 1 cut(s) | 1526 |
| Bso31I | GGTCTC | 2 cut(s) | 1182, 2129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1668 |
| Bsp1407I | TGTACA | 1 cut(s) | 2107 |
| Bsp19I | CCATGG | 1 cut(s) | 56 |
| BspACI | CCGC | 1 cut(s) | 363 |
| BspANI | GGCC | 1 cut(s) | 1526 |
| BspCNI | CTCAG | 5 cut(s) | 295, 345, 652, 1872, 1927 |
| BspFNI | CGCG | 1 cut(s) | 647 |
| BspLI | GGNNCC | 3 cut(s) | 156, 743, 1107 |
| BspMAI | CTGCAG | 1 cut(s) | 1789 |
| BspOI | GCTAGC | 2 cut(s) | 542, 1550 |
| BspPI | GGATC | 2 cut(s) | 193, 2262 |
| BspQI | GCTCTTC | 1 cut(s) | 1646 |
| BspTI | CTTAAG | 1 cut(s) | 1520 |
| BspTNI | GGTCTC | 2 cut(s) | 1182, 2129 |
| BsrGI | TGTACA | 1 cut(s) | 2107 |
| BsrI | ACTGG | 4 cut(s) | 177, 585, 1473, 1962 |
| BssECI | CCNNGG | 2 cut(s) | 56, 150 |
| BssNAI | GTATAC | 1 cut(s) | 756 |
| BssNI | GRCGYC | 1 cut(s) | 61 |
| BssT1I | CCWWGG | 2 cut(s) | 56, 150 |
| Bst1107I | GTATAC | 1 cut(s) | 756 |
| Bst2UI | CCWGG | 2 cut(s) | 731, 2150 |
| Bst4CI | ACNGT | 5 cut(s) | 94, 130, 531, 1121, 1469 |
| Bst6I | CTCTTC | 5 cut(s) | 1185, 1646, 1722, 1881, 2029 |
| BstACI | GRCGYC | 1 cut(s) | 61 |
| BstAFI | CTTAAG | 1 cut(s) | 1520 |
| BstAUI | TGTACA | 1 cut(s) | 2107 |
| BstC8I | GCNNGC | 6 cut(s) | 365, 540, 1051, 1222, 1548, 1775 |
| BstDEI | CTNAG | 7 cut(s) | 282, 353, 639, 1368, 1865, 1880, 1935 |
| BstDSI | CCRYGG | 1 cut(s) | 56 |
| BstFNI | CGCG | 1 cut(s) | 647 |
| BstHHI | GCGC | 4 cut(s) | 649, 865, 1279, 1384 |
| BstMAI | GTCTC | 5 cut(s) | 285, 351, 437, 1182, 2129 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 389, 434, 497, 1779 |
| BstNI | CCWGG | 2 cut(s) | 731, 2150 |
| BstNSI | RCATGY | 2 cut(s) | 304, 1777 |
| BstSCI | CCNGG | 2 cut(s) | 729, 2148 |
| BstSFI | CTRYAG | 1 cut(s) | 1785 |
| BstUI | CGCG | 1 cut(s) | 647 |
| BstV1I | GCAGC | 5 cut(s) | 282, 370, 855, 1555, 2205 |
| BstV2I | GAAGAC | 4 cut(s) | 1469, 1920, 2155, 2222 |
| BstX2I | RGATCY | 1 cut(s) | 2285 |
| BstYI | RGATCY | 1 cut(s) | 2285 |
| BstZ17I | GTATAC | 1 cut(s) | 756 |
| BsuRI | GGCC | 1 cut(s) | 1526 |
| BtgI | CCRYGG | 1 cut(s) | 56 |
| BtsIMutI | CAGTG | 3 cut(s) | 184, 1474, 1799 |
| Cac8I | GCNNGC | 6 cut(s) | 365, 540, 1051, 1222, 1548, 1775 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1049 |
| CfoI | GCGC | 4 cut(s) | 649, 865, 1279, 1384 |
| Cfr13I | GGNCC | 3 cut(s) | 109, 741, 2146 |
| CseI | GACGC | 3 cut(s) | 50, 653, 1549 |
| Csp6I | GTAC | 5 cut(s) | 1020, 1994, 2039, 2077, 2108 |
| CviQI | GTAC | 5 cut(s) | 1020, 1994, 2039, 2077, 2108 |
| DdeI | CTNAG | 7 cut(s) | 282, 353, 639, 1368, 1865, 1880, 1935 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 305 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 305 |
| Eam1104I | CTCTTC | 5 cut(s) | 1185, 1646, 1722, 1881, 2029 |
| EarI | CTCTTC | 5 cut(s) | 1185, 1646, 1722, 1881, 2029 |
| Eco130I | CCWWGG | 2 cut(s) | 56, 150 |
| Eco147I | AGGCCT | 1 cut(s) | 1526 |
| Eco24I | GRGCYC | 1 cut(s) | 1668 |
| Eco31I | GGTCTC | 2 cut(s) | 1182, 2129 |
| Eco47I | GGWCC | 3 cut(s) | 109, 741, 2146 |
| EcoO109I | RGGNCCY | 2 cut(s) | 109, 741 |
| EcoRII | CCWGG | 2 cut(s) | 729, 2148 |
| EcoT14I | CCWWGG | 2 cut(s) | 56, 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 1775 |
| EcoT38I | GRGCYC | 1 cut(s) | 1668 |
| ErhI | CCWWGG | 2 cut(s) | 56, 150 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1405, 1437 |
| FaqI | GGGAC | 5 cut(s) | 149, 326, 567, 1301, 1705 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FauNDI | CATATG | 3 cut(s) | 138, 1241, 1687 |
| FbaI | TGATCA | 4 cut(s) | 399, 984, 1750, 2115 |
| FblI | GTMKAC | 1 cut(s) | 755 |
| Fnu4HI | GCNGC | 5 cut(s) | 271, 384, 844, 1544, 2219 |
| FriOI | GRGCYC | 1 cut(s) | 1668 |
| Fsp4HI | GCNGC | 5 cut(s) | 271, 384, 844, 1544, 2219 |
| FspBI | CTAG | 5 cut(s) | 539, 1202, 1547, 1779, 2339 |
| GlaI | GCGC | 4 cut(s) | 648, 864, 1278, 1383 |
| GluI | GCNGC | 5 cut(s) | 271, 384, 844, 1544, 2219 |
| GsaI | CCCAGC | 1 cut(s) | 948 |
| GsuI | CTGGAG | 2 cut(s) | 160, 2198 |
| HaeIII | GGCC | 1 cut(s) | 1526 |
| HapII | CCGG | 1 cut(s) | 232 |
| HgaI | GACGC | 3 cut(s) | 50, 653, 1549 |
| HhaI | GCGC | 4 cut(s) | 649, 865, 1279, 1384 |
| Hin1I | GRCGYC | 1 cut(s) | 61 |
| Hin6I | GCGC | 4 cut(s) | 647, 863, 1277, 1382 |
| HinP1I | GCGC | 4 cut(s) | 647, 863, 1277, 1382 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 4 cut(s) | 855, 1304, 1370, 2046 |
| HinfI | GANTC | 5 cut(s) | 4, 903, 925, 1516, 1676 |
| HpaII | CCGG | 1 cut(s) | 232 |
| HphI | GGTGA | 5 cut(s) | 106, 863, 1662, 1771, 2041 |
| Hpy166II | GTNNAC | 6 cut(s) | 133, 756, 1020, 1955, 1972, 2108 |
| Hpy8I | GTNNAC | 6 cut(s) | 133, 756, 1020, 1955, 1972, 2108 |
| Hpy99I | CGWCG | 1 cut(s) | 66 |
| HpyCH4III | ACNGT | 5 cut(s) | 94, 130, 531, 1121, 1469 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 389, 434, 497, 1779 |
| HpyF3I | CTNAG | 7 cut(s) | 282, 353, 639, 1368, 1865, 1880, 1935 |
| Hsp92I | GRCGYC | 1 cut(s) | 61 |
| HspAI | GCGC | 4 cut(s) | 647, 863, 1277, 1382 |
| Ksp22I | TGATCA | 4 cut(s) | 399, 984, 1750, 2115 |
| LguI | GCTCTTC | 1 cut(s) | 1646 |
| LmnI | GCTCC | 1 cut(s) | 691 |
| Lsp1109I | GCAGC | 5 cut(s) | 282, 370, 855, 1555, 2205 |
| LweI | GCATC | 8 cut(s) | 307, 1005, 1036, 1054, 1102, 1723, 1760, 2187 |
| MaeI | CTAG | 5 cut(s) | 539, 1202, 1547, 1779, 2339 |
| MaeIII | GTNAC | 5 cut(s) | 94, 1327, 1561, 1616, 2089 |
| MfeI | CAATTG | 4 cut(s) | 372, 469, 1496, 1655 |
| MflI | RGATCY | 1 cut(s) | 2285 |
| MhlI | GDGCHC | 1 cut(s) | 1668 |
| MluCI | AATT | 9 cut(s) | 372, 416, 469, 1029, 1072, 1496, 1655, 2013, 2330 |
| MlyI | GAGTC | 1 cut(s) | 897 |
| Mph1103I | ATGCAT | 1 cut(s) | 1775 |
| MroXI | GAANNNNTTC | 5 cut(s) | 464, 617, 1420, 2059, 2186 |
| MseI | TTAA | 5 cut(s) | 1059, 1137, 1521, 1635, 1920 |
| MslI | CAYNNNNRTG | 3 cut(s) | 299, 608, 2195 |
| MspA1I | CMGCKG | 1 cut(s) | 2218 |
| MspCI | CTTAAG | 1 cut(s) | 1520 |
| MspI | CCGG | 1 cut(s) | 232 |
| MspR9I | CCNGG | 2 cut(s) | 731, 2150 |
| MunI | CAATTG | 4 cut(s) | 372, 469, 1496, 1655 |
| Mva1269I | GAATGC | 1 cut(s) | 2348 |
| MvaI | CCWGG | 2 cut(s) | 731, 2150 |
| MvnI | CGCG | 1 cut(s) | 647 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 389, 434, 497, 1779 |
| NcoI | CCATGG | 1 cut(s) | 56 |
| NdeI | CATATG | 3 cut(s) | 138, 1241, 1687 |
| NheI | GCTAGC | 2 cut(s) | 538, 1546 |
| NlaIV | GGNNCC | 3 cut(s) | 156, 743, 1107 |
| NmuCI | GTSAC | 3 cut(s) | 1327, 1561, 2089 |
| NsiI | ATGCAT | 1 cut(s) | 1775 |
| NspI | RCATGY | 2 cut(s) | 304, 1777 |
| PaeI | GCATGC | 1 cut(s) | 1777 |
| PceI | AGGCCT | 1 cut(s) | 1526 |
| PciSI | GCTCTTC | 1 cut(s) | 1646 |
| PctI | GAATGC | 1 cut(s) | 2348 |
| PdmI | GAANNNNTTC | 5 cut(s) | 464, 617, 1420, 2059, 2186 |
| PfeI | GAWTC | 4 cut(s) | 4, 925, 1516, 1676 |
| PflFI | GACNNNGTC | 2 cut(s) | 1010, 1810 |
| PkrI | GCNGC | 5 cut(s) | 272, 385, 845, 1545, 2220 |
| PleI | GAGTC | 1 cut(s) | 897 |
| PpsI | GAGTC | 1 cut(s) | 897 |
| PpuMI | RGGWCCY | 2 cut(s) | 109, 741 |
| PsiI | TTATAA | 2 cut(s) | 1125, 1794 |
| Psp5II | RGGWCCY | 2 cut(s) | 109, 741 |
| Psp6I | CCWGG | 2 cut(s) | 729, 2148 |
| PspFI | CCCAGC | 1 cut(s) | 944 |
| PspGI | CCWGG | 2 cut(s) | 729, 2148 |
| PspN4I | GGNNCC | 3 cut(s) | 156, 743, 1107 |
| PspPI | GGNCC | 3 cut(s) | 109, 741, 2146 |
| PspPPI | RGGWCCY | 2 cut(s) | 109, 741 |
| PstI | CTGCAG | 1 cut(s) | 1789 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1049 |
| PsuI | RGATCY | 1 cut(s) | 2285 |
| PsyI | GACNNNGTC | 2 cut(s) | 1010, 1810 |
| PvuII | CAGCTG | 1 cut(s) | 2218 |
| RsaI | GTAC | 5 cut(s) | 1021, 1995, 2040, 2078, 2109 |
| RsaNI | GTAC | 5 cut(s) | 1020, 1994, 2039, 2077, 2108 |
| RseI | CAYNNNNRTG | 3 cut(s) | 299, 608, 2195 |
| SapI | GCTCTTC | 1 cut(s) | 1646 |
| SaqAI | TTAA | 5 cut(s) | 1059, 1137, 1521, 1635, 1920 |
| SatI | GCNGC | 5 cut(s) | 271, 384, 844, 1544, 2219 |
| Sau96I | GGNCC | 3 cut(s) | 109, 741, 2146 |
| SchI | GAGTC | 1 cut(s) | 897 |
| ScrFI | CCNGG | 2 cut(s) | 731, 2150 |
| SduI | GDGCHC | 1 cut(s) | 1668 |
| SfaNI | GCATC | 8 cut(s) | 307, 1005, 1036, 1054, 1102, 1723, 1760, 2187 |
| SfcI | CTRYAG | 1 cut(s) | 1785 |
| SinI | GGWCC | 3 cut(s) | 109, 741, 2146 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 299, 608, 2195 |
| SmlI | CTYRAG | 5 cut(s) | 868, 1373, 1443, 1520, 2222 |
| SmoI | CTYRAG | 5 cut(s) | 868, 1373, 1443, 1520, 2222 |
| SphI | GCATGC | 1 cut(s) | 1777 |
| Sse9I | AATT | 9 cut(s) | 372, 416, 469, 1029, 1072, 1496, 1655, 2013, 2330 |
| SseBI | AGGCCT | 1 cut(s) | 1526 |
| SsiI | CCGC | 1 cut(s) | 363 |
| SspI | AATATT | 2 cut(s) | 1287, 2058 |
| SspMI | CTAG | 5 cut(s) | 539, 1202, 1547, 1779, 2339 |
| StuI | AGGCCT | 1 cut(s) | 1526 |
| StyD4I | CCNGG | 2 cut(s) | 729, 2148 |
| StyI | CCWWGG | 2 cut(s) | 56, 150 |
| TaaI | ACNGT | 5 cut(s) | 94, 130, 531, 1121, 1469 |
| TaqI | TCGA | 1 cut(s) | 25 |
| TaqII | GACCGA | 2 cut(s) | 280, 1164 |
| TasI | AATT | 9 cut(s) | 372, 416, 469, 1029, 1072, 1496, 1655, 2013, 2330 |
| TatI | WGTACW | 3 cut(s) | 2038, 2076, 2107 |
| TfiI | GAWTC | 4 cut(s) | 4, 925, 1516, 1676 |
| Tru1I | TTAA | 5 cut(s) | 1059, 1137, 1521, 1635, 1920 |
| Tru9I | TTAA | 5 cut(s) | 1059, 1137, 1521, 1635, 1920 |
| TscAI | CASTG | 3 cut(s) | 184, 1474, 1806 |
| TseFI | GTSAC | 3 cut(s) | 1327, 1561, 2089 |
| TseI | GCWGC | 5 cut(s) | 270, 383, 843, 1543, 2218 |
| Tsp45I | GTSAC | 3 cut(s) | 1327, 1561, 2089 |
| TspRI | CASTG | 3 cut(s) | 184, 1474, 1806 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1010, 1810 |
| Vha464I | CTTAAG | 1 cut(s) | 1520 |
| VpaK11BI | GGWCC | 3 cut(s) | 109, 741, 2146 |
| XapI | RAATTY | 2 cut(s) | 1072, 2330 |
| XbaI | TCTAGA | 1 cut(s) | 2338 |
| XceI | RCATGY | 2 cut(s) | 304, 1777 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 421 |
| XmiI | GTMKAC | 1 cut(s) | 755 |
| XmnI | GAANNNNTTC | 5 cut(s) | 464, 617, 1420, 2059, 2186 |
| XspI | CTAG | 5 cut(s) | 539, 1202, 1547, 1779, 2339 |
| Zsp2I | ATGCAT | 1 cut(s) | 1775 |