Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0016134

Physical Location & Seq

Genomic Coordinates Forward (+)

6496142 .. 6499609

Gene Structure 3468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGGAACCCTCTACACTCATCGGTGCAACGCCTCGGCCCACCTCGGCTCTACTTCCGGTGGTCCCCGCCGCCGCCTGCAGCGGCACGCTGGGCGACCACCTGGCTCGGCGGCTGGTCGGGATCGGCGTTCATGACGTGTTCTCCGTCCCCGGCGACTTCAACTTGACCCTCTTGGACCACCTGGTCGCCGAGCCGGGGCTCAACCTCATCGGCTGCTGCAACGAGCTCAACGCCGGCTACGCCGCCGACGGCTACGCGCGCGCCAGGGGCGTCGGCGCGTGTGTCGTCACTTTCACGGTGGGTGGGCTCAGCGTCTTGAACGCCATCGCCGGTGCTTACAGTGAGAACTTGCCGGTGATTTGTATCGTCGGTGGGCCCAACTCCAATGATTACGGGACCAATCGGATCCTCCACCACACGATCGGGTTGCCCGATTTCTCTCAGGAGCTCCGGTGCTTCCAAGCTGTTACTTGTCACCAGGCAGTGGTGAGTAATTTGGAAGATGGGCATGAGCTTATAGACACGGCAATTTCGACAGCATTGAAGGAGAGCAAGCCGGTTTACATTAGCGTAAGTTGTAATTTGCCTGCAATTCCTCACCCCACATTTGGTAGAGACCCTGTCCCTTTCTTTCTTGCGCCGAAAGAAAGCAATCAATTAGGGTTGGAGGCAGCTGTTGAAGCAACTGCTGCATTCCTGAACAAGGCAGTGAAGCCTGTGCTTGTGGGTGGGCCCAAGCTAAGAGTGGCAAAGGCCCAGAAGGCCTTTGTGGAGCTTGCAGATGCTAGTGGGTACCCGATAGCGGTTATGCCCTCCGGTAAGGGTTTGGTGCCGGAGCACCACCCACATTTCATTGGGACTTATTGGGGTGCTGTGAGTACTAGTTTCTGTGGAGAGATTGTGGAGTCTGCAGATGCTTATGTTTTTGTTGGCCCAATTTTTAATGATTATAGCTCTGTTGGGTACTCCTTGCTGATCAAGAAGGAGAAGGCAATCATTGTGGAGCCTAATCGTGTGACCATTGGGAATGGTCCATCATTTGGCTGGGTTTTCATGGGTGATTTCTTGACTGCATTGGCCAAGAAGCTGAAGAAAAACAGTACCGGTATGGAGAATTACCGCAGAATTTTTGTTCCCCCTGGAATCCCTCTGAAAGCTCAGAAAGATGAACCTCTTAGAGTAAATGTTCTGTTTAAGCACATTCAGGAGATTGTCACCCCAAACACTGCCATAATCGCCGAAACTGGTGACTCATGGTTCAATTGTCAGAAGCTCCGCCTCCCTGAGAATTGTGGGTACGAATTCCAGATGCAATATGGATCTATTGGATGGTCTGTGGGTGCTACTCTCGGCTATGCTCAGGGTGCCAAAGATAAACGTGTAATCTCTTGCATAGGTGATGGGAGTTTCCAGGTTACTGCCCAGGACATTTCAACAATGATCCGATGTGGACAAAATACCATCATATTTCTTATCAACAATGGTGGCTATACAATCGAAGTAGAGATTCATGATGGCCCATACAATGTCATTAAGAACTGGGATTATACTGGTCTTGTTGATGCAATCCACAATGGTGAAGGCAAATGCTGGACTACCAAGGTACGTACAGAGGAGGACTTAACTGAAGCAATTGCAAAAGCAACAGGGGAGCACAAGGATAGTTTATGCTTCATCGAAGTTTTTGTGCACAAAGATGACACTAGCAAAGAGCTTCTGGAATGGGGATCCCGAGTTTCAGCTGCTAACAGCCGACCTCCAAATCCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

590

Amino Acids

63.44

Weight (kDa)

5.83

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPP_enzyme_N	PF02776	29 - 134	5.2e-29	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
TPP_enzyme_M	PF00205	226 - 344	1.6e-23	Thiamine pyrophosphate enzyme, central domain
TPP_enzyme_C	PF02775	436 - 561	8.3e-15	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79540
fragaria_vesca	FvH4_3g13661
malus_domestica	MD05G1241300.v1.1
prunus_persica	Prupe.4G124200_v2.0.a1 Prupe.4G124200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022901
rosa_laevigata	RLG00000032681
rosa_multiflora	Rmu_co8399345.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056430
rosa_rugosa	Rorug05G0075400
rosa_samantha	Rh5AG161900 Rh5BG161100 Rh5CG175600 Rh5DG162300
rosa_wichuraiana	Rw5G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	792
AccB1I	GGYRCC	3 cut(s)	792, 829, 1364
AccB7I	CCANNNNNTGG	2 cut(s)	484, 1040
AccII	CGCG	4 cut(s)	257, 259, 261, 278
AciI	CCGC	9 cut(s)	66, 69, 72, 81, 109, 243, 803, 1120, 1276
AclWI	GGATC	7 cut(s)	128, 400, 413, 1327, 1435, 1722, 1735
AcoI	YGGCCR	1 cut(s)	1077
AcsI	RAATTY	2 cut(s)	1125, 1301
AcuI	CTGAAG	2 cut(s)	1109, 1647
AcyI	GRCGYC	1 cut(s)	270
AfaI	GTAC	7 cut(s)	794, 880, 965, 1102, 1298, 1605, 1609
AfiI	CCNNNNNNNGG	6 cut(s)	195, 484, 608, 703, 802, 1040
AflIII	ACRYGT	2 cut(s)	135, 1378
AgeI	ACCGGT	1 cut(s)	1103
AgsI	TTSAA	6 cut(s)	160, 319, 544, 680, 1261, 1434
AhlI	ACTAGT	1 cut(s)	881
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	7 cut(s)	99, 180, 263, 477, 1138, 1410, 1422
AleI	CACNNNNGTG	1 cut(s)	1575
Alw21I	GWGCWC	5 cut(s)	228, 450, 840, 1656, 1692
Alw26I	GTCTC	1 cut(s)	609
Alw44I	GTGCAC	1 cut(s)	1688
AlwI	GGATC	7 cut(s)	128, 400, 413, 1327, 1435, 1722, 1735
Ama87I	CYCGRG	1 cut(s)	1731
AoxI	GGCC	8 cut(s)	35, 374, 731, 753, 762, 931, 1077, 1516
ApaI	GGGCCC	2 cut(s)	378, 735
ApaLI	GTGCAC	1 cut(s)	1688
ApeKI	GCWGC	6 cut(s)	78, 213, 216, 671, 689, 1742
ApoI	RAATTY	2 cut(s)	1125, 1301
AsiGI	ACCGGT	1 cut(s)	1103
Asp718I	GGTACC	1 cut(s)	792
AspLEI	GCGC	5 cut(s)	259, 261, 263, 278, 640
AsuC2I	CCSGG	2 cut(s)	150, 195
AsuHPI	GGTGA	9 cut(s)	367, 467, 499, 590, 1070, 1207, 1259, 1409, 1589
AvaI	CYCGRG	1 cut(s)	1731
AvaII	GGWCC	4 cut(s)	61, 175, 396, 1031
BaeGI	GKGCMC	3 cut(s)	378, 735, 1692
BalI	TGGCCA	1 cut(s)	1079
BamHI	GGATCC	2 cut(s)	405, 1727
BanI	GGYRCC	3 cut(s)	792, 829, 1364
BanII	GRGCYC	6 cut(s)	201, 228, 309, 378, 450, 735
Bbv12I	GWGCWC	5 cut(s)	228, 450, 840, 1656, 1692
BbvI	GCAGC	6 cut(s)	90, 200, 203, 676, 683, 1729
BccI	CCATC	7 cut(s)	332, 497, 1042, 1323, 1394, 1469, 1508
BceAI	ACGGC	2 cut(s)	265, 540
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	7 cut(s)	101, 182, 265, 479, 1140, 1412, 1424
BclI	TGATCA	1 cut(s)	975
BcnI	CCSGG	2 cut(s)	150, 195
BcoDI	GTCTC	1 cut(s)	609
BcuI	ACTAGT	1 cut(s)	881
BfaI	CTAG	3 cut(s)	786, 882, 1704
BfmI	CTRYAG	2 cut(s)	76, 909
BglI	GCCNNNNNGGC	1 cut(s)	761
BlpI	GCTNAGC	1 cut(s)	308
BmcAI	AGTACT	1 cut(s)	880
Bme1390I	CCNGG	9 cut(s)	101, 150, 182, 195, 265, 479, 1140, 1412, 1424
Bme18I	GGWCC	4 cut(s)	61, 175, 396, 1031
BmeT110I	CYCGRG	1 cut(s)	1731
BmgBI	CACGTC	1 cut(s)	136
BmrFI	CCNGG	9 cut(s)	101, 150, 182, 195, 265, 479, 1140, 1412, 1424
BmrI	ACTGGG	1 cut(s)	1549
BmsI	GCATC	4 cut(s)	772, 904, 1299, 1552
BmuI	ACTGGG	1 cut(s)	1549
Bpu10I	CCTNAGC	1 cut(s)	1359
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuMI	CCSGG	2 cut(s)	150, 195
BsaAI	YACGTR	1 cut(s)	1607
BsaBI	GATNNNNATC	1 cut(s)	362
BsaHI	GRCGYC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	609
BsaJI	CCNNGG	8 cut(s)	32, 42, 148, 194, 264, 1138, 1422, 1599
BsaWI	WCCGGW	4 cut(s)	55, 450, 815, 1103
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 437, 467, 885, 915
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 484, 608, 703, 802, 1040
Bse118I	RCCGGY	5 cut(s)	233, 329, 352, 556, 1103
Bse1I	ACTGG	3 cut(s)	1249, 1544, 1555
Bse8I	GATNNNNATC	1 cut(s)	362
BseBI	CCWGG	7 cut(s)	101, 182, 265, 479, 1140, 1412, 1424
BseDI	CCNNGG	8 cut(s)	32, 42, 148, 194, 264, 1138, 1422, 1599
BseGI	GGATG	1 cut(s)	1334
BseJI	GATNNNNATC	1 cut(s)	362
BseLI	CCNNNNNNNGG	6 cut(s)	195, 484, 608, 703, 802, 1040
BseMII	CTCAG	5 cut(s)	322, 455, 1172, 1275, 1373
BseNI	ACTGG	3 cut(s)	1249, 1544, 1555
BsePI	GCGCGC	2 cut(s)	257, 259
BseRI	GAGGAG	1 cut(s)	1628
BseSI	GKGCMC	3 cut(s)	378, 735, 1692
BseXI	GCAGC	6 cut(s)	90, 200, 203, 676, 683, 1729
BseYI	CCCAGC	2 cut(s)	88, 1044
Bsh1236I	CGCG	4 cut(s)	257, 259, 261, 278
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	8 cut(s)	37, 376, 733, 755, 764, 933, 1079, 1518
BshNI	GGYRCC	3 cut(s)	792, 829, 1364
BshTI	ACCGGT	1 cut(s)	1103
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	5 cut(s)	228, 450, 840, 1656, 1692
BsiHKCI	CYCGRG	1 cut(s)	1731
BslFI	GGGAC	5 cut(s)	47, 131, 409, 608, 871
BslI	CCNNNNNNNGG	6 cut(s)	195, 484, 608, 703, 802, 1040
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	5 cut(s)	47, 131, 409, 608, 871
BsmI	GAATGC	1 cut(s)	692
BsnI	GGCC	8 cut(s)	37, 376, 733, 755, 764, 933, 1079, 1518
Bso31I	GGTCTC	1 cut(s)	609
BsoBI	CYCGRG	1 cut(s)	1731
Bsp120I	GGGCCC	2 cut(s)	374, 731
Bsp1286I	GDGCHC	9 cut(s)	201, 228, 309, 378, 450, 735, 840, 1656, 1692
Bsp143I	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	9 cut(s)	66, 69, 72, 81, 109, 243, 803, 1120, 1276
BspANI	GGCC	8 cut(s)	37, 376, 733, 755, 764, 933, 1079, 1518
BspCNI	CTCAG	5 cut(s)	321, 454, 1171, 1276, 1372
BspFNI	CGCG	4 cut(s)	257, 259, 261, 278
BspHI	TCATGA	2 cut(s)	130, 1510
BspMAI	CTGCAG	2 cut(s)	80, 913
BspPI	GGATC	7 cut(s)	128, 400, 413, 1327, 1435, 1722, 1735
BspT107I	GGYRCC	3 cut(s)	792, 829, 1364
BspTNI	GGTCTC	1 cut(s)	609
BsrFI	RCCGGY	5 cut(s)	233, 329, 352, 556, 1103
BsrI	ACTGG	3 cut(s)	1249, 1544, 1555
BssAI	RCCGGY	5 cut(s)	233, 329, 352, 556, 1103
BssECI	CCNNGG	8 cut(s)	32, 42, 148, 194, 264, 1138, 1422, 1599
BssHII	GCGCGC	2 cut(s)	257, 259
BssMI	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	1599
Bst2UI	CCWGG	7 cut(s)	101, 182, 265, 479, 1140, 1412, 1424
Bst4CI	ACNGT	3 cut(s)	298, 341, 1100
BstACI	GRCGYC	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	1607
BstC8I	GCNNGC	8 cut(s)	76, 86, 235, 259, 261, 554, 588, 777
BstDEI	CTNAG	8 cut(s)	308, 441, 740, 1158, 1175, 1284, 1359, 1767
BstENI	CCTNNNNNAGG	1 cut(s)	701
BstF5I	GGATG	1 cut(s)	1334
BstFNI	CGCG	4 cut(s)	257, 259, 261, 278
BstHHI	GCGC	5 cut(s)	259, 261, 263, 278, 640
BstKTI	GATC	7 cut(s)	123, 408, 423, 978, 1322, 1443, 1730
BstMAI	GTCTC	1 cut(s)	609
BstMBI	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	9 cut(s)	90, 239, 258, 267, 680, 689, 761, 1235, 1364
BstNI	CCWGG	7 cut(s)	101, 182, 265, 479, 1140, 1412, 1424
BstSCI	CCNGG	9 cut(s)	99, 148, 180, 193, 263, 477, 1138, 1410, 1422
BstSFI	CTRYAG	2 cut(s)	76, 909
BstSLI	GKGCMC	3 cut(s)	378, 735, 1692
BstSNI	TACGTA	1 cut(s)	1607
BstUI	CGCG	4 cut(s)	257, 259, 261, 278
BstV1I	GCAGC	6 cut(s)	90, 200, 203, 676, 683, 1729
BstX2I	RGATCY	3 cut(s)	405, 1319, 1727
BstYI	RGATCY	3 cut(s)	405, 1319, 1727
BsuRI	GGCC	8 cut(s)	37, 376, 733, 755, 764, 933, 1079, 1518
BtgZI	GCGATG	1 cut(s)	310
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	1334
BtsI	GCAGTG	3 cut(s)	489, 714, 1224
BtsIMutI	CAGTG	4 cut(s)	346, 489, 714, 1224
Cac8I	GCNNGC	8 cut(s)	76, 86, 235, 259, 261, 554, 588, 777
CciI	TCATGA	2 cut(s)	130, 1510
CfoI	GCGC	5 cut(s)	259, 261, 263, 278, 640
Cfr10I	RCCGGY	5 cut(s)	233, 329, 352, 556, 1103
CseI	GACGC	2 cut(s)	259, 301
CsiI	ACCWGGT	1 cut(s)	180
Csp6I	GTAC	7 cut(s)	793, 879, 964, 1101, 1297, 1604, 1608
CspAI	ACCGGT	1 cut(s)	1103
CspCI	CAANNNNNGTGG	4 cut(s)	981, 1016, 1465, 1500
CviAII	CATG	5 cut(s)	131, 509, 1054, 1254, 1511
CviQI	GTAC	7 cut(s)	793, 879, 964, 1101, 1297, 1604, 1608
DdeI	CTNAG	8 cut(s)	308, 441, 740, 1158, 1175, 1284, 1359, 1767
DpnI	GATC	7 cut(s)	122, 407, 422, 977, 1321, 1442, 1729
DpnII	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
DrdI	GACNNNNNNGTC	1 cut(s)	182
DseDI	GACNNNNNNGTC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	1077
EciI	GGCGGA	1 cut(s)	1265
Ecl136II	GAGCTC	2 cut(s)	226, 448
Eco105I	TACGTA	1 cut(s)	1607
Eco130I	CCWWGG	1 cut(s)	1599
Eco147I	AGGCCT	1 cut(s)	764
Eco24I	GRGCYC	6 cut(s)	201, 228, 309, 378, 450, 735
Eco31I	GGTCTC	1 cut(s)	609
Eco47I	GGWCC	4 cut(s)	61, 175, 396, 1031
Eco53kI	GAGCTC	2 cut(s)	226, 448
Eco57I	CTGAAG	2 cut(s)	1109, 1647
Eco88I	CYCGRG	1 cut(s)	1731
EcoICRI	GAGCTC	2 cut(s)	226, 448
EcoNI	CCTNNNNNAGG	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	1301
EcoRII	CCWGG	7 cut(s)	99, 180, 263, 477, 1138, 1410, 1422
EcoT14I	CCWWGG	1 cut(s)	1599
EcoT38I	GRGCYC	6 cut(s)	201, 228, 309, 378, 450, 735
ErhI	CCWWGG	1 cut(s)	1599
FaeI	CATG	5 cut(s)	134, 512, 1057, 1257, 1514
FaqI	GGGAC	5 cut(s)	47, 131, 409, 608, 871
FatI	CATG	5 cut(s)	130, 508, 1053, 1253, 1510
FauI	CCCGC	1 cut(s)	73
FbaI	TGATCA	1 cut(s)	975
FokI	GGATG	1 cut(s)	1341
FriOI	GRGCYC	6 cut(s)	201, 228, 309, 378, 450, 735
FspBI	CTAG	3 cut(s)	786, 882, 1704
GlaI	GCGC	5 cut(s)	258, 260, 262, 277, 639
GsaI	CCCAGC	2 cut(s)	92, 1048
HaeIII	GGCC	8 cut(s)	37, 376, 733, 755, 764, 933, 1079, 1518
HgaI	GACGC	2 cut(s)	259, 301
HhaI	GCGC	5 cut(s)	259, 261, 263, 278, 640
Hin1I	GRCGYC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	134, 512, 1057, 1257, 1514
Hin6I	GCGC	5 cut(s)	257, 259, 261, 276, 638
HinP1I	GCGC	5 cut(s)	257, 259, 261, 276, 638
HinfI	GANTC	4 cut(s)	905, 1143, 1250, 1507
HphI	GGTGA	9 cut(s)	367, 467, 499, 590, 1070, 1207, 1259, 1409, 1589
Hpy166II	GTNNAC	3 cut(s)	562, 1451, 1690
Hpy188I	TCNGA	5 cut(s)	405, 1152, 1161, 1269, 1445
Hpy8I	GTNNAC	3 cut(s)	562, 1451, 1690
Hpy99I	CGWCG	3 cut(s)	251, 275, 371
HpyAV	CCTTC	5 cut(s)	538, 754, 976, 982, 1574
HpyCH4III	ACNGT	3 cut(s)	298, 341, 1100
HpyCH4IV	ACGT	3 cut(s)	135, 1378, 1606
HpyF10VI	GCNNNNNNNGC	9 cut(s)	90, 239, 258, 267, 680, 689, 761, 1235, 1364
HpyF3I	CTNAG	8 cut(s)	308, 441, 740, 1158, 1175, 1284, 1359, 1767
HpySE526I	ACGT	3 cut(s)	135, 1378, 1606
Hsp92I	GRCGYC	1 cut(s)	270
Hsp92II	CATG	5 cut(s)	134, 512, 1057, 1257, 1514
HspAI	GCGC	5 cut(s)	257, 259, 261, 276, 638
KpnI	GGTACC	1 cut(s)	796
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	975
Kzo9I	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
LmnI	GCTCC	7 cut(s)	445, 453, 772, 835, 1003, 1278, 1651
Lsp1109I	GCAGC	6 cut(s)	90, 200, 203, 676, 683, 1729
LweI	GCATC	4 cut(s)	772, 904, 1299, 1552
MabI	ACCWGGT	1 cut(s)	180
MaeI	CTAG	3 cut(s)	786, 882, 1704
MaeII	ACGT	3 cut(s)	135, 1378, 1606
MaeIII	GTNAC	7 cut(s)	286, 466, 473, 1015, 1213, 1247, 1414
MalI	GATC	7 cut(s)	122, 407, 422, 977, 1321, 1442, 1729
MauBI	CGCGCGCG	1 cut(s)	257
MboI	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
MboII	GAAGA	2 cut(s)	512, 1102
MfeI	CAATTG	2 cut(s)	1261, 1632
MflI	RGATCY	3 cut(s)	405, 1319, 1727
MhlI	GDGCHC	9 cut(s)	201, 228, 309, 378, 450, 735, 840, 1656, 1692
MlsI	TGGCCA	1 cut(s)	1079
MluNI	TGGCCA	1 cut(s)	1079
MlyI	GAGTC	2 cut(s)	914, 1244
MmeI	TCCRAC	1 cut(s)	645
Mox20I	TGGCCA	1 cut(s)	1079
MroNI	GCCGGC	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	1079
MseI	TTAA	4 cut(s)	942, 1194, 1533, 1622
MslI	CAYNNNNRTG	2 cut(s)	1575, 1695
Msp20I	TGGCCA	1 cut(s)	1079
MspA1I	CMGCKG	3 cut(s)	81, 674, 1742
MspR9I	CCNGG	9 cut(s)	101, 150, 182, 195, 265, 479, 1140, 1412, 1424
MunI	CAATTG	2 cut(s)	1261, 1632
Mva1269I	GAATGC	1 cut(s)	692
MvaI	CCWGG	7 cut(s)	101, 182, 265, 479, 1140, 1412, 1424
MvnI	CGCG	4 cut(s)	257, 259, 261, 278
MwoI	GCNNNNNNNGC	9 cut(s)	90, 239, 258, 267, 680, 689, 761, 1235, 1364
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	2 cut(s)	150, 195
NdeII	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	134, 512, 1057, 1257, 1514
NmeAIII	GCCGAG	5 cut(s)	13, 23, 85, 214, 1329
NmuCI	GTSAC	5 cut(s)	286, 473, 1015, 1213, 1247
OliI	CACNNNNGTG	1 cut(s)	1575
PagI	TCATGA	2 cut(s)	130, 1510
PauI	GCGCGC	2 cut(s)	257, 259
PceI	AGGCCT	1 cut(s)	764
PcsI	WCGNNNNNNNCGW	4 cut(s)	123, 141, 429, 530
PctI	GAATGC	1 cut(s)	692
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	1143, 1507
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	2 cut(s)	484, 1040
PinAI	ACCGGT	1 cut(s)	1103
Ple19I	CGATCG	1 cut(s)	423
PleI	GAGTC	2 cut(s)	913, 1244
PpsI	GAGTC	2 cut(s)	913, 1244
Ppu21I	YACGTR	1 cut(s)	1607
Psp124BI	GAGCTC	2 cut(s)	228, 450
Psp6I	CCWGG	7 cut(s)	99, 180, 263, 477, 1138, 1410, 1422
PspFI	CCCAGC	2 cut(s)	88, 1044
PspGI	CCWGG	7 cut(s)	99, 180, 263, 477, 1138, 1410, 1422
PspOMI	GGGCCC	2 cut(s)	374, 731
PstI	CTGCAG	2 cut(s)	80, 913
PsuI	RGATCY	3 cut(s)	405, 1319, 1727
PsyI	GACNNNGTC	1 cut(s)	620
PteI	GCGCGC	2 cut(s)	257, 259
PvuI	CGATCG	1 cut(s)	423
PvuII	CAGCTG	2 cut(s)	674, 1742
RsaI	GTAC	7 cut(s)	794, 880, 965, 1102, 1298, 1605, 1609
RsaNI	GTAC	7 cut(s)	793, 879, 964, 1101, 1297, 1604, 1608
RseI	CAYNNNNRTG	2 cut(s)	1575, 1695
SacI	GAGCTC	2 cut(s)	228, 450
SaqAI	TTAA	4 cut(s)	942, 1194, 1533, 1622
Sau3AI	GATC	7 cut(s)	120, 405, 420, 975, 1319, 1440, 1727
ScaI	AGTACT	1 cut(s)	880
SchI	GAGTC	2 cut(s)	914, 1244
ScrFI	CCNGG	9 cut(s)	101, 150, 182, 195, 265, 479, 1140, 1412, 1424
SduI	GDGCHC	9 cut(s)	201, 228, 309, 378, 450, 735, 840, 1656, 1692
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	4 cut(s)	772, 904, 1299, 1552
SfcI	CTRYAG	2 cut(s)	76, 909
SfiI	GGCCNNNNNGGCC	1 cut(s)	761
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	4 cut(s)	61, 175, 396, 1031
SmiMI	CAYNNNNRTG	2 cut(s)	1575, 1695
SnaBI	TACGTA	1 cut(s)	1607
SpeI	ACTAGT	1 cut(s)	881
SseBI	AGGCCT	1 cut(s)	764
SsiI	CCGC	9 cut(s)	66, 69, 72, 81, 109, 243, 803, 1120, 1276
SspMI	CTAG	3 cut(s)	786, 882, 1704
SstI	GAGCTC	2 cut(s)	228, 450
StuI	AGGCCT	1 cut(s)	764
StyD4I	CCNGG	9 cut(s)	99, 148, 180, 193, 263, 477, 1138, 1410, 1422
StyI	CCWWGG	1 cut(s)	1599
TaaI	ACNGT	3 cut(s)	298, 341, 1100
TaiI	ACGT	3 cut(s)	138, 1381, 1609
TaqI	TCGA	3 cut(s)	533, 1497, 1677
TatI	WGTACW	1 cut(s)	878
TauI	GCSGC	5 cut(s)	71, 74, 84, 112, 245
TfiI	GAWTC	2 cut(s)	1143, 1507
Tru1I	TTAA	4 cut(s)	942, 1194, 1533, 1622
Tru9I	TTAA	4 cut(s)	942, 1194, 1533, 1622
TscAI	CASTG	4 cut(s)	346, 489, 714, 1231
TseFI	GTSAC	5 cut(s)	286, 473, 1015, 1213, 1247
TseI	GCWGC	6 cut(s)	78, 213, 216, 671, 689, 1742
Tsp45I	GTSAC	5 cut(s)	286, 473, 1015, 1213, 1247
TspDTI	ATGAA	6 cut(s)	119, 841, 1042, 1182, 1499, 1663
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	4 cut(s)	346, 489, 714, 1231
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	2 cut(s)	484, 1040
VneI	GTGCAC	1 cut(s)	1688
VpaK11BI	GGWCC	4 cut(s)	61, 175, 396, 1031
XagI	CCTNNNNNAGG	1 cut(s)	701
XapI	RAATTY	2 cut(s)	1125, 1301
XcmI	CCANNNNNNNNNTGG	3 cut(s)	742, 1041, 1313
XspI	CTAG	3 cut(s)	786, 882, 1704
ZrmI	AGTACT	1 cut(s)	880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.