Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0016134

Physical Location & Seq

Genomic Coordinates Forward (+)

17788245 .. 17792127

Gene Structure 3883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032681

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2565 bp

ATGAAACCCCTCCTCCGCCCCATCCACTACTTCATTCCCAAACCCCCGTGGCGGCGCCGCTACTCCCACACCCAACCAGACCCATCTCCCACCGCCCATGACCTCCTCACCATCCTCAACAAGTCCGACGGCGCTGAATCCCTGGTCTCACACCTCTCCAATAACAAGCTCATCTCTCTGATCCAAGAACACCACACAAACCCACAATTGGGCTTTCGCCTCTTCATCTGGGCCACCCAAAGATCCAAGCTTTGCACCCGAATGTGTCGTTCCACAGTGATTGACATGCTCCTGGGGGACGATAATGGTGTTGAACTCTACTGGAGGACCCTGGAGGAGTTCAGAGATGCCGGGATTCGAATCGGGTGTGATGCATTTTCTGTGCTGATCAGAGGGTATGATAAGCTGGGCATTGCCGAGAAGGCGGTGGAGGCTTTTTCAAGGATGAAGGAGTTCGATTGTAAGCCTGATGTTTATACTTACAATGCGGTTTTATATGTTTTGGTGAGGAAAGAAGTGTTTTTGTTAGCTTTAGCTGTGTATAACCAAATGTTGAAGTGTAATCTTAGCCCCAGTAGGACTACCTATAGCATTTTGATCAATGGGTTTTGCAAGAGTAGGAAAACCCAGGATGCGATTCAGATGTTTGATGAGATGACACAGAGAGGGATTGCACCCAATACTGTTACTTATACTATTATCATTTCCGGGTTGTGCAAGGCAAAGAGGGCTCATGATGCGCATAGGCTGGTCGATACGATGAAGGAAACCGGGTGTACTCCTGATGTGATTACTTACCATGCTTTGCTTGATGGGTATTGTAAGTTAGGTAGGCTTGATGAAGCTTATGCGCTCGTGAGGTTATTGGAGAGGGATGGTTATGTTCTTGGAGTGGAGGGATATAGTTCCTTGATTTTGGGTTTGTTTAGAGCTAGGAGGTTTGATGAGGCACATGAGTTGTATGGGAAGTTGATCGACGAGGGGATTAAGCTTGATGTTATCTTGTGTACTATATTGATTAAGGGGCTGGCAGACGCTGGCAGGGTTACGGATGCTTTGAACTTCTTGAGTGAGATGAGTAAAAAAGGTTTAGTTCCAGATGCCTACTGTTATAATGCTGTCATCAAAGGGTTCTGCGATTTAGGTCTTTTGGATGAAGCTCGATCTCTCCATCTTGAGATTTCGAAGCAAGATTGCTTCCCTAATGCCTGCACTTACACCATTCTCATTTGTGGTATGTGCAGGAATGGGCTGATAGGGGAAGCAGCACAGATATTCAATGCGATGGAGAAGCTTGGATGTGTTCCTTCTGTTGTAACCTTCAATGCTCTTATTGATGGGCTTTGTAAGGCTTCTAAGATTGAGGATGCACAGTTGCTGTTTTACAAGATGGAGATAGGAAAAAAACCTTCGTTATTTCTTCGTCTTTCTCAAGGTAGTGATCGGGTTATTGATAGTGCGAGTCTTCAAAAGAAGGTGGAGCAATTGTGCGAGTCAGGATTGATTCTTCAGGCCTATAAACTTCTGATGCAGCTAGCTAGTAGTGGGGTTGCCCCTGACGTCATCACTTACAACACTCTAATCAATGGGTTTTGCAAAAATGGAAACATAGATGGTGCTTTCAAACTCTTCAAGGATATGCAATTGAAAGGGATCGCCCCAGATTCTGTTACATATGGAGCACTTATAGATGGACTTCAAAGGGTTGAAAGAGAAGAAGATGCCTTTGTGGTCTTTAATCAAATGGTGAAGAATGGATGCACACCTAGCTCTGAAGTTTACAAATCACTGATGACTTGGTCTTGCAGGAATAGCAAGGTTTCAGTAGCTGTTAGTCTTTGGTTGAAGTACCTGAGCAGCCTTCCTCACAGAGAAGAGGAAGCAATCAAAGCAATAGAGGAAAATTTTAAAGAGGGGCAAATTGAGAAGGCGATCCAAGGCTTACTTGAAATGGATGTAAAGTTTAAAGATATAGATTTAGGACCATACACTATTTTGCTCATTGGTTTGTGTCAGGTGCAAAGAGTGGGTGAAGCTCTGAGAATGTTTTCTGTACTTCAGGAGTACAAAGTCAATGTCACTCCACCAAGTTGTGTGCACTTGATAAATGGTCTCTGCAAAGAAGGAAATTTGGACCTGGCAATAAATGTTTTCCATTATACTCTGGAGAGGGGTTTCATGTTAATGCCCGAAATATGCAATAAGCTGCTCAAGTGTCTTCTTCGTTCCCGAGACAAAAAGGACCGTGCCTTTGATCTCATTCGTAGGATGAGAAATTTTGGATATGATCTTGATGCTTGTCTTCACCAGACTACAAACAATTTGCATCCAACAAACTCAGCTGGCACAATTAAGCTGGACTTGATGAAGGGGATTGGCTCTGAATATAGTTCTTTTTCTTTTTCAGACCAAATTTGGCCATGGAGAAAAAATAGAATGAATTTGCAGGCTGATCAGAAAAGAGCTGAAAGGTCAAGAATCTGCAGTGGTGGATCCTATATGTCTCAAATTGGTTCTTTACAGGCATGGTTCTCTTTTGATGCCAAGGTTTTGTTGGCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

855

Amino Acids

96.22

Weight (kDa)

8.41

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	111 - 169	2.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	126 - 168	3.1e-07	PPR repeat family
PPR_2	PF13041	156 - 205	2.4e-13	PPR repeat family
TPR_24	PF23276	164 - 282	3.5e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	176 - 287	1.3e-12	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	188 - 220	3.5e-10	PPR repeat
PPR	PF01535	195 - 224	6.2e-08	PPR repeat
PPR_2	PF13041	199 - 240	4.5e-16	PPR repeat family
PPR_3	PF13812	215 - 273	9.5e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	222 - 255	2.8e-11	PPR repeat
PPR_2	PF13041	227 - 275	2e-16	PPR repeat family
PPR_1	PF12854	258 - 287	5.5e-11	PPR repeat
PPR_2	PF13041	298 - 344	5.3e-06	PPR repeat family
PPR_3	PF13812	325 - 378	3.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	332 - 380	4e-13	PPR repeat family
PPR_1	PF12854	362 - 389	2.1e-07	PPR repeat
PPR_2	PF13041	370 - 415	8.7e-12	PPR repeat family
PPR_3	PF13812	393 - 446	5.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	398 - 430	5.8e-11	PPR repeat
PPR_2	PF13041	401 - 450	1.3e-16	PPR repeat family
PPR	PF01535	405 - 434	1.8e-06	PPR repeat
PPR_1	PF12854	433 - 465	4.8e-11	PPR repeat
PPR_2	PF13041	436 - 465	6.7e-06	PPR repeat family
PPR_2	PF13041	496 - 533	8.4e-09	PPR repeat family
PPR_long	PF17177	502 - 637	1.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	508 - 563	1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	516 - 548	1.6e-16	PPR repeat
PPR_2	PF13041	519 - 566	1.9e-20	PPR repeat family
PPR	PF01535	522 - 552	1e-10	PPR repeat
PPR_3	PF13812	542 - 598	6.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	550 - 583	3.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79540
fragaria_vesca	FvH4_3g13661
malus_domestica	MD05G1241300.v1.1
prunus_persica	Prupe.4G124200_v2.0.a1 Prupe.4G124200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022901
rosa_laevigata	RLG00000032681
rosa_multiflora	Rmu_co8399345.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056430
rosa_rugosa	Rorug05G0075400
rosa_samantha	Rh5AG161900 Rh5BG161100 Rh5CG175600 Rh5DG162300
rosa_wichuraiana	Rw5G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1113
AatII	GACGTC	1 cut(s)	1563
Acc16I	TGCGCA	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	6 cut(s)	16, 52, 58, 93, 425, 488
AclWI	GGATC	6 cut(s)	175, 237, 1661, 1927, 2487, 2500
AcoI	YGGCCR	2 cut(s)	2417, 2556
AcsI	RAATTY	5 cut(s)	1903, 2128, 2275, 2412, 2440
AcuI	CTGAAG	3 cut(s)	1493, 1794, 2042
AcyI	GRCGYC	2 cut(s)	55, 1560
AfaI	GTAC	5 cut(s)	778, 1009, 1850, 2055, 2066
AfiI	CCNNNNNNNGG	3 cut(s)	51, 208, 209
AjnI	CCWGG	5 cut(s)	141, 291, 330, 627, 2136
Alw21I	GWGCWC	2 cut(s)	1684, 2100
Alw26I	GTCTC	4 cut(s)	151, 2117, 2226, 2508
Alw44I	GTGCAC	1 cut(s)	2096
AlwI	GGATC	6 cut(s)	175, 237, 1661, 1927, 2487, 2500
AlwNI	CAGNNNCTG	4 cut(s)	1037, 1378, 1667, 1829
Ama87I	CYCGRG	1 cut(s)	2229
AoxI	GGCC	4 cut(s)	231, 1512, 2417, 2556
ApaLI	GTGCAC	1 cut(s)	2096
ApeKI	GCWGC	4 cut(s)	1265, 1531, 1857, 2206
ApoI	RAATTY	5 cut(s)	1903, 2128, 2275, 2412, 2440
ArsI	GACNNNNNNTTYG	4 cut(s)	2061, 2093, 2234, 2266
Asp700I	GAANNNNTTC	2 cut(s)	452, 2047
AspLEI	GCGC	4 cut(s)	57, 134, 742, 853
AspS9I	GGNCC	5 cut(s)	231, 327, 1982, 2134, 2242
AsuC2I	CCSGG	3 cut(s)	352, 709, 772
AsuHPI	GGTGA	5 cut(s)	100, 517, 1759, 2042, 2297
AsuII	TTCGAA	2 cut(s)	358, 1184
AsuNHI	GCTAGC	1 cut(s)	1534
AvaI	CYCGRG	1 cut(s)	2229
AvaII	GGWCC	4 cut(s)	327, 1982, 2134, 2242
BaeGI	GKGCMC	1 cut(s)	2100
BalI	TGGCCA	2 cut(s)	2419, 2558
BamHI	GGATCC	1 cut(s)	2492
BanI	GGYRCC	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	733
BauI	CACGAG	1 cut(s)	854
BbsI	GAAGAC	3 cut(s)	1457, 2210, 2294
Bbv12I	GWGCWC	2 cut(s)	1684, 2100
BbvI	GCAGC	4 cut(s)	1277, 1543, 1869, 2193
BceAI	ACGGC	1 cut(s)	145
BciT130I	CCWGG	5 cut(s)	143, 293, 332, 629, 2138
BclI	TGATCA	3 cut(s)	387, 597, 2452
BcnI	CCSGG	3 cut(s)	352, 709, 772
BcoDI	GTCTC	4 cut(s)	151, 2117, 2226, 2508
BfaI	CTAG	4 cut(s)	933, 1535, 1539, 1767
BfmI	CTRYAG	2 cut(s)	586, 2482
BfoI	RGCGCY	2 cut(s)	58, 135
BglI	GCCNNNNNGGC	1 cut(s)	422
BisI	GCNGC	6 cut(s)	53, 58, 1266, 1532, 1858, 2207
BlsI	GCNGC	6 cut(s)	54, 59, 1267, 1533, 1859, 2208
Bme1390I	CCNGG	8 cut(s)	143, 293, 332, 352, 629, 709, 772, 2138
Bme18I	GGWCC	4 cut(s)	327, 1982, 2134, 2242
BmeT110I	CYCGRG	1 cut(s)	2229
BmgT120I	GGNCC	5 cut(s)	231, 327, 1982, 2134, 2242
BmiI	GGNNCC	3 cut(s)	56, 329, 2494
BmrFI	CCNGG	8 cut(s)	143, 293, 332, 352, 629, 709, 772, 2138
BmrI	ACTGGG	1 cut(s)	567
BmtI	GCTAGC	1 cut(s)	1538
BmuI	ACTGGG	1 cut(s)	567
BpiI	GAAGAC	3 cut(s)	1457, 2210, 2294
BpmI	CTGGAG	3 cut(s)	343, 353, 2186
Bpu10I	CCTNAGC	1 cut(s)	1853
Bpu14I	TTCGAA	2 cut(s)	358, 1184
BpuEI	CTTGAG	4 cut(s)	1087, 1196, 1416, 2195
BpuMI	CCSGG	3 cut(s)	352, 709, 772
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	55, 1560
BsaI	GGTCTC	2 cut(s)	151, 2117
BsaJI	CCNNGG	8 cut(s)	47, 141, 292, 330, 627, 1936, 2420, 2544
BsaXI	ACNNNNNCTCC	3 cut(s)	27, 1472, 1502
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 208, 209
Bse1I	ACTGG	2 cut(s)	326, 573
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	5 cut(s)	143, 293, 332, 629, 2138
BseDI	CCNNGG	8 cut(s)	47, 141, 292, 330, 627, 1936, 2420, 2544
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	3 cut(s)	51, 208, 209
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	1844, 2030, 2352
BseNI	ACTGG	2 cut(s)	326, 573
BseRI	GAGGAG	2 cut(s)	95, 350
BseSI	GKGCMC	1 cut(s)	2100
BseXI	GCAGC	4 cut(s)	1277, 1543, 1869, 2193
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	2 cut(s)	1195, 1261
BshFI	GGCC	4 cut(s)	233, 1514, 2419, 2558
BshNI	GGYRCC	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	1684, 2100
BsiHKCI	CYCGRG	1 cut(s)	2229
BsiSI	CCGG	3 cut(s)	351, 708, 771
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	3 cut(s)	51, 208, 209
BsmAI	GTCTC	4 cut(s)	151, 2117, 2226, 2508
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	4 cut(s)	233, 1514, 2419, 2558
Bso31I	GGTCTC	2 cut(s)	151, 2117
BsoBI	CYCGRG	1 cut(s)	2229
Bsp119I	TTCGAA	2 cut(s)	358, 1184
Bsp1286I	GDGCHC	3 cut(s)	733, 1684, 2100
Bsp19I	CCATGG	1 cut(s)	2420
BspACI	CCGC	6 cut(s)	16, 52, 58, 93, 425, 488
BspANI	GGCC	4 cut(s)	233, 1514, 2419, 2558
BspCNI	CTCAG	3 cut(s)	1845, 2031, 2351
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	3 cut(s)	56, 329, 2494
BspMAI	CTGCAG	1 cut(s)	2486
BspOI	GCTAGC	1 cut(s)	1538
BspPI	GGATC	6 cut(s)	175, 237, 1661, 1927, 2487, 2500
BspT104I	TTCGAA	2 cut(s)	358, 1184
BspT107I	GGYRCC	1 cut(s)	54
BspTNI	GGTCTC	2 cut(s)	151, 2117
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	326, 573
BssECI	CCNNGG	8 cut(s)	47, 141, 292, 330, 627, 1936, 2420, 2544
BssNI	GRCGYC	2 cut(s)	55, 1560
BssSI	CACGAG	1 cut(s)	854
BssT1I	CCWWGG	3 cut(s)	1936, 2420, 2544
Bst2BI	CACGAG	1 cut(s)	854
Bst2UI	CCWGG	5 cut(s)	143, 293, 332, 629, 2138
Bst4CI	ACNGT	5 cut(s)	277, 685, 1109, 1374, 2246
Bst6I	CTCTTC	3 cut(s)	227, 1634, 1869
BstACI	GRCGYC	2 cut(s)	55, 1560
BstBI	TTCGAA	2 cut(s)	358, 1184
BstC8I	GCNNGC	6 cut(s)	1029, 1039, 1210, 1536, 2344, 2448
BstDEI	CTNAG	5 cut(s)	566, 1356, 1853, 2039, 2338
BstDSI	CCRYGG	2 cut(s)	47, 2420
BstH2I	RGCGCY	2 cut(s)	58, 135
BstHHI	GCGC	4 cut(s)	57, 134, 742, 853
BstMAI	GTCTC	4 cut(s)	151, 2117, 2226, 2508
BstMWI	GCNNNNNNNGC	7 cut(s)	422, 431, 728, 737, 1767, 1812, 1889
BstNI	CCWGG	5 cut(s)	143, 293, 332, 629, 2138
BstNSI	RCATGY	1 cut(s)	289
BstSCI	CCNGG	8 cut(s)	141, 291, 330, 350, 627, 707, 770, 2136
BstSFI	CTRYAG	2 cut(s)	586, 2482
BstSLI	GKGCMC	1 cut(s)	2100
BstV1I	GCAGC	4 cut(s)	1277, 1543, 1869, 2193
BstV2I	GAAGAC	3 cut(s)	1457, 2210, 2294
BstX2I	RGATCY	2 cut(s)	242, 2492
BstYI	RGATCY	2 cut(s)	242, 2492
BsuRI	GGCC	4 cut(s)	233, 1514, 2419, 2558
BtgI	CCRYGG	2 cut(s)	47, 2420
BtgZI	GCGATG	1 cut(s)	1298
BtsI	GCAGTG	1 cut(s)	2491
BtsIMutI	CAGTG	3 cut(s)	282, 1787, 2491
Cac8I	GCNNGC	6 cut(s)	1029, 1039, 1210, 1536, 2344, 2448
CaiI	CAGNNNCTG	4 cut(s)	1037, 1378, 1667, 1829
CciI	TCATGA	1 cut(s)	733
CfoI	GCGC	4 cut(s)	57, 134, 742, 853
Cfr13I	GGNCC	5 cut(s)	231, 327, 1982, 2134, 2242
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	5 cut(s)	777, 1008, 1849, 2054, 2065
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	8 cut(s)	98, 286, 734, 800, 953, 2179, 2421, 2526
CviQI	GTAC	5 cut(s)	777, 1008, 1849, 2054, 2065
DdeI	CTNAG	5 cut(s)	566, 1356, 1853, 2039, 2338
DinI	GGCGCC	1 cut(s)	56
DraI	TTTAAA	2 cut(s)	1909, 1966
EaeI	YGGCCR	2 cut(s)	2417, 2556
Eam1104I	CTCTTC	3 cut(s)	227, 1634, 1869
EarI	CTCTTC	3 cut(s)	227, 1634, 1869
EciI	GGCGGA	1 cut(s)	5
Eco130I	CCWWGG	3 cut(s)	1936, 2420, 2544
Eco147I	AGGCCT	1 cut(s)	1514
Eco24I	GRGCYC	1 cut(s)	733
Eco31I	GGTCTC	2 cut(s)	151, 2117
Eco47I	GGWCC	4 cut(s)	327, 1982, 2134, 2242
Eco57I	CTGAAG	3 cut(s)	1493, 1794, 2042
Eco88I	CYCGRG	1 cut(s)	2229
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	5 cut(s)	141, 291, 330, 627, 2136
EcoT14I	CCWWGG	3 cut(s)	1936, 2420, 2544
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	733
EgeI	GGCGCC	1 cut(s)	56
EheI	GGCGCC	1 cut(s)	56
ErhI	CCWWGG	3 cut(s)	1936, 2420, 2544
FaeI	CATG	8 cut(s)	101, 289, 737, 803, 956, 2182, 2424, 2529
FalI	AAGNNNNNCTT	4 cut(s)	1929, 1961, 2345, 2377
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	8 cut(s)	97, 285, 733, 799, 952, 2178, 2420, 2525
FauNDI	CATATG	1 cut(s)	1675
FbaI	TGATCA	3 cut(s)	387, 597, 2452
Fnu4HI	GCNGC	6 cut(s)	53, 58, 1266, 1532, 1858, 2207
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	6 cut(s)	53, 58, 1266, 1532, 1858, 2207
FspAI	RTGCGCAY	1 cut(s)	741
FspBI	CTAG	4 cut(s)	933, 1535, 1539, 1767
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	4 cut(s)	56, 133, 741, 852
GluI	GCNGC	6 cut(s)	53, 58, 1266, 1532, 1858, 2207
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	3 cut(s)	343, 353, 2186
HaeII	RGCGCY	2 cut(s)	58, 135
HaeIII	GGCC	4 cut(s)	233, 1514, 2419, 2558
HapII	CCGG	3 cut(s)	351, 708, 771
HgaI	GACGC	1 cut(s)	1043
HhaI	GCGC	4 cut(s)	57, 134, 742, 853
Hin1I	GRCGYC	2 cut(s)	55, 1560
Hin1II	CATG	8 cut(s)	101, 289, 737, 803, 956, 2182, 2424, 2529
Hin6I	GCGC	4 cut(s)	55, 132, 740, 851
HinP1I	GCGC	4 cut(s)	55, 132, 740, 851
HindIII	AAGCTT	4 cut(s)	248, 843, 989, 1292
HinfI	GANTC	9 cut(s)	137, 355, 360, 637, 1462, 1493, 1504, 1664, 2478
HpaII	CCGG	3 cut(s)	351, 708, 771
HphI	GGTGA	5 cut(s)	100, 517, 1759, 2042, 2297
Hpy166II	GTNNAC	4 cut(s)	777, 1008, 1780, 2098
Hpy8I	GTNNAC	4 cut(s)	777, 1008, 1780, 2098
Hpy99I	CGWCG	2 cut(s)	131, 980
HpyCH4III	ACNGT	5 cut(s)	277, 685, 1109, 1374, 2246
HpyCH4IV	ACGT	1 cut(s)	1560
HpyF10VI	GCNNNNNNNGC	7 cut(s)	422, 431, 728, 737, 1767, 1812, 1889
HpyF3I	CTNAG	5 cut(s)	566, 1356, 1853, 2039, 2338
HpySE526I	ACGT	1 cut(s)	1560
Hsp92I	GRCGYC	2 cut(s)	55, 1560
Hsp92II	CATG	8 cut(s)	101, 289, 737, 803, 956, 2182, 2424, 2529
HspAI	GCGC	4 cut(s)	55, 132, 740, 851
KasI	GGCGCC	1 cut(s)	54
Ksp22I	TGATCA	3 cut(s)	387, 597, 2452
LmnI	GCTCC	3 cut(s)	294, 1480, 1679
Lsp1109I	GCAGC	4 cut(s)	1277, 1543, 1869, 2193
MaeI	CTAG	4 cut(s)	933, 1535, 1539, 1767
MaeII	ACGT	1 cut(s)	1560
MaeIII	GTNAC	5 cut(s)	685, 1045, 1315, 1669, 2077
MfeI	CAATTG	3 cut(s)	206, 1484, 1643
MflI	RGATCY	2 cut(s)	242, 2492
MhlI	GDGCHC	3 cut(s)	733, 1684, 2100
MlsI	TGGCCA	2 cut(s)	2419, 2558
MluNI	TGGCCA	2 cut(s)	2419, 2558
Mly113I	GGCGCC	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	1471, 1502
MmeI	TCCRAC	2 cut(s)	150, 2354
Mox20I	TGGCCA	2 cut(s)	2419, 2558
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	2 cut(s)	452, 2047
MscI	TGGCCA	2 cut(s)	2419, 2558
MseI	TTAA	7 cut(s)	987, 1020, 1737, 1908, 1965, 2183, 2352
MslI	CAYNNNNRTG	2 cut(s)	260, 2183
Msp20I	TGGCCA	2 cut(s)	2419, 2558
MspA1I	CMGCKG	1 cut(s)	2342
MspI	CCGG	3 cut(s)	351, 708, 771
MspR9I	CCNGG	8 cut(s)	143, 293, 332, 352, 629, 709, 772, 2138
MunI	CAATTG	3 cut(s)	206, 1484, 1643
MvaI	CCWGG	5 cut(s)	143, 293, 332, 629, 2138
MwoI	GCNNNNNNNGC	7 cut(s)	422, 431, 728, 737, 1767, 1812, 1889
NarI	GGCGCC	1 cut(s)	55
NciI	CCSGG	3 cut(s)	352, 709, 772
NcoI	CCATGG	1 cut(s)	2420
NdeI	CATATG	1 cut(s)	1675
NheI	GCTAGC	1 cut(s)	1534
NlaIII	CATG	8 cut(s)	101, 289, 737, 803, 956, 2182, 2424, 2529
NlaIV	GGNNCC	3 cut(s)	56, 329, 2494
NmeAIII	GCCGAG	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	2077
NsbI	TGCGCA	1 cut(s)	741
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	1 cut(s)	289
NspV	TTCGAA	2 cut(s)	358, 1184
PagI	TCATGA	1 cut(s)	733
PceI	AGGCCT	1 cut(s)	1514
PdmI	GAANNNNTTC	2 cut(s)	452, 2047
PfeI	GAWTC	7 cut(s)	137, 355, 360, 637, 1504, 1664, 2478
PflFI	GACNNNGTC	1 cut(s)	1798
PkrI	GCNGC	6 cut(s)	54, 59, 1267, 1533, 1859, 2208
PleI	GAGTC	2 cut(s)	1470, 1501
PluTI	GGCGCC	1 cut(s)	58
PpsI	GAGTC	2 cut(s)	1470, 1501
PpuMI	RGGWCCY	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	1113
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	5 cut(s)	141, 291, 330, 627, 2136
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	5 cut(s)	141, 291, 330, 627, 2136
PspN4I	GGNNCC	3 cut(s)	56, 329, 2494
PspPI	GGNCC	5 cut(s)	231, 327, 1982, 2134, 2242
PspPPI	RGGWCCY	1 cut(s)	327
PstI	CTGCAG	1 cut(s)	2486
PstNI	CAGNNNCTG	4 cut(s)	1037, 1378, 1667, 1829
PsuI	RGATCY	2 cut(s)	242, 2492
PsyI	GACNNNGTC	1 cut(s)	1798
PvuII	CAGCTG	1 cut(s)	2342
RsaI	GTAC	5 cut(s)	778, 1009, 1850, 2055, 2066
RsaNI	GTAC	5 cut(s)	777, 1008, 1849, 2054, 2065
RseI	CAYNNNNRTG	2 cut(s)	260, 2183
SaqAI	TTAA	7 cut(s)	987, 1020, 1737, 1908, 1965, 2183, 2352
SatI	GCNGC	6 cut(s)	53, 58, 1266, 1532, 1858, 2207
Sau96I	GGNCC	5 cut(s)	231, 327, 1982, 2134, 2242
SchI	GAGTC	2 cut(s)	1471, 1502
ScrFI	CCNGG	8 cut(s)	143, 293, 332, 352, 629, 709, 772, 2138
SduI	GDGCHC	3 cut(s)	733, 1684, 2100
SfcI	CTRYAG	2 cut(s)	586, 2482
SfoI	GGCGCC	1 cut(s)	56
SfuI	TTCGAA	2 cut(s)	358, 1184
SinI	GGWCC	4 cut(s)	327, 1982, 2134, 2242
SmiMI	CAYNNNNRTG	2 cut(s)	260, 2183
SmlI	CTYRAG	4 cut(s)	1066, 1175, 1431, 2210
SmoI	CTYRAG	4 cut(s)	1066, 1175, 1431, 2210
SseBI	AGGCCT	1 cut(s)	1514
SsiI	CCGC	6 cut(s)	16, 52, 58, 93, 425, 488
SspDI	GGCGCC	1 cut(s)	54
SspMI	CTAG	4 cut(s)	933, 1535, 1539, 1767
StuI	AGGCCT	1 cut(s)	1514
StyD4I	CCNGG	8 cut(s)	141, 291, 330, 350, 627, 707, 770, 2136
StyI	CCWWGG	3 cut(s)	1936, 2420, 2544
TaaI	ACNGT	5 cut(s)	277, 685, 1109, 1374, 2246
TaiI	ACGT	1 cut(s)	1563
TaqI	TCGA	6 cut(s)	358, 456, 753, 975, 1162, 1184
TatI	WGTACW	4 cut(s)	776, 1007, 2053, 2064
TauI	GCSGC	2 cut(s)	55, 60
TfiI	GAWTC	7 cut(s)	137, 355, 360, 637, 1504, 1664, 2478
Tru1I	TTAA	7 cut(s)	987, 1020, 1737, 1908, 1965, 2183, 2352
Tru9I	TTAA	7 cut(s)	987, 1020, 1737, 1908, 1965, 2183, 2352
TscAI	CASTG	3 cut(s)	282, 1794, 2491
TseFI	GTSAC	1 cut(s)	2077
TseI	GCWGC	4 cut(s)	1265, 1531, 1857, 2206
Tsp45I	GTSAC	1 cut(s)	2077
TspGWI	ACGGA	1 cut(s)	1064
TspRI	CASTG	3 cut(s)	282, 1794, 2491
Tth111I	GACNNNGTC	1 cut(s)	1798
VneI	GTGCAC	1 cut(s)	2096
VpaK11BI	GGWCC	4 cut(s)	327, 1982, 2134, 2242
XapI	RAATTY	5 cut(s)	1903, 2128, 2275, 2412, 2440
XceI	RCATGY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2551
XmnI	GAANNNNTTC	2 cut(s)	452, 2047
XspI	CTAG	4 cut(s)	933, 1535, 1539, 1767
ZraI	GACGTC	1 cut(s)	1561
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.