Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399345.1

Orthogroup ID

OG0016134

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1265

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399345.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1264 bp

tttagagctaggaggtttgatgaggcacatgagttgtatgggaagttgatcggcgaggggattaagcttgatgttatcttgtgtactatattgattaaggggctggcagacgctggcagggttactgatgctttgaacttcttgagtgagatgagtaagaaaggtttggttccagatgcatactgttataatgctgtcatcaaagggttctgcgatttaggtcttttggatgaagctcgatctctccatcttgagatttcgaagcaagattgcttccctaatgcctgcacttacaccattctcatttgtggtatgtgcaggaatgggctgataggggaagcagcacagatattcaatgagatggagaagcttggatgtgttccttctgttgtaaccttcaatgctcttattgatgggctttgtaaggcttctaagcttgaggatgcgcagttgctgttttacaagatggagataggaaaaaaaccttcattatttcttcgtctttctcaaggtagtgatcgggttattgatagtgcgagtcttcaaaagaaggtggagcaattgtgcgagtcaggattgattcttcaggcctataaacttctgatgcagctagctagtagtggggttgcccctgacgtcatcacttacaacactctaatcaatgggttttgcaaaaatggaaacatagatggtgctttcaaactcttcaaggatatgcaattgaaagggatcgccccagattctgttacatatggaacacttatagatggacttcaaagggttgaaagagaagaagatgcctttgtggtctttaatcaaatggtgaagaatggatgcacacctagctctgaagtttacaaatcactgatgacttggtcttgcaggtatagcaaggtttcggtagctgttagtctttggttgaagtacctgagcagccttcctcacagagaagaggaagcaatcaaagcaatagaggaaaattttaaagaggggcaaattgagaaggcaatccaaggcttacttgaaatggatgtaaagtttaaagatttagatttaggaccgtacactattttgctcattggtttgtgtcaggtgcaaagagtgggtgaagctctgagaatgttttctgtacttcaggagtacaaagtcaatgtcactccaccaagttgtgtgcacttgataaatggtctctgcaaagaagggaatttggacctggcaataaatgttttccattatactctggagaggggtttcatgttaatgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

421

Amino Acids

46.85

Weight (kDa)

5.74

Isoelectric Point (pI)

32.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016134)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79540
fragaria_vesca	FvH4_3g13661
malus_domestica	MD05G1241300.v1.1
prunus_persica	Prupe.4G124200_v2.0.a1 Prupe.4G124200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022901
rosa_laevigata	RLG00000032681
rosa_multiflora	Rmu_co8399345.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056430
rosa_rugosa	Rorug05G0075400
rosa_samantha	Rh5AG161900 Rh5BG161100 Rh5CG175600 Rh5DG162300
rosa_wichuraiana	Rw5G014570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AatII	GACGTC	1 cut(s)	639
Acc16I	TGCGCA	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	873
AclWI	GGATC	1 cut(s)	737
AcsI	RAATTY	2 cut(s)	979, 1204
AcuI	CTGAAG	3 cut(s)	569, 870, 1118
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	5 cut(s)	85, 926, 1064, 1131, 1142
AjnI	CCWGG	1 cut(s)	1212
Alw21I	GWGCWC	1 cut(s)	1176
Alw26I	GTCTC	1 cut(s)	1193
Alw44I	GTGCAC	1 cut(s)	1172
AlwI	GGATC	1 cut(s)	737
AlwNI	CAGNNNCTG	3 cut(s)	113, 454, 743
AoxI	GGCC	1 cut(s)	588
ApaLI	GTGCAC	1 cut(s)	1172
ApeKI	GCWGC	3 cut(s)	341, 607, 933
ApoI	RAATTY	2 cut(s)	979, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	1137, 1169
Asp700I	GAANNNNTTC	1 cut(s)	1123
AspLEI	GCGC	1 cut(s)	448
AspS9I	GGNCC	2 cut(s)	1058, 1210
AsuHPI	GGTGA	2 cut(s)	835, 1118
AsuII	TTCGAA	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	610
AvaII	GGWCC	2 cut(s)	1058, 1210
BaeGI	GKGCMC	1 cut(s)	1176
BbsI	GAAGAC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	1176
BbvI	GCAGC	3 cut(s)	353, 619, 945
BccI	CCATC	6 cut(s)	255, 355, 407, 460, 683, 761
BciT130I	CCWGG	1 cut(s)	1214
BcoDI	GTCTC	1 cut(s)	1193
BfaI	CTAG	4 cut(s)	9, 611, 615, 843
BfuAI	ACCTGC	1 cut(s)	873
BisI	GCNGC	3 cut(s)	342, 608, 934
BlsI	GCNGC	3 cut(s)	343, 609, 935
Bme1390I	CCNGG	1 cut(s)	1214
Bme18I	GGWCC	2 cut(s)	1058, 1210
BmgT120I	GGNCC	2 cut(s)	1058, 1210
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	1214
BmsI	GCATC	6 cut(s)	118, 166, 433, 594, 787, 824
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	1262
Bpu10I	CCTNAGC	1 cut(s)	929
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	4 cut(s)	163, 272, 458, 492
BsaHI	GRCGYC	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	1193
BsaJI	CCNNGG	1 cut(s)	1012
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
BseBI	CCWGG	1 cut(s)	1214
BseDI	CCNNGG	1 cut(s)	1012
BseGI	GGATG	5 cut(s)	235, 380, 448, 839, 1036
BseMII	CTCAG	2 cut(s)	920, 1106
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	3 cut(s)	353, 619, 945
BsgI	GTGCAG	2 cut(s)	271, 337
BshFI	GGCC	1 cut(s)	590
BsiHKAI	GWGCWC	1 cut(s)	1176
BsmAI	GTCTC	1 cut(s)	1193
BsnI	GGCC	1 cut(s)	590
Bso31I	GGTCTC	1 cut(s)	1193
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	1176
Bsp143I	GATC	4 cut(s)	48, 239, 517, 729
BspANI	GGCC	1 cut(s)	590
BspCNI	CTCAG	2 cut(s)	921, 1107
BspLI	GGNNCC	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	873
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	1 cut(s)	737
BspT104I	TTCGAA	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	1193
BssECI	CCNNGG	1 cut(s)	1012
BssMI	GATC	4 cut(s)	48, 239, 517, 729
BssNI	GRCGYC	1 cut(s)	636
BssT1I	CCWWGG	1 cut(s)	1012
Bst2UI	CCWGG	1 cut(s)	1214
Bst4CI	ACNGT	2 cut(s)	185, 1062
Bst6I	CTCTTC	2 cut(s)	710, 945
BstACI	GRCGYC	1 cut(s)	636
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	4 cut(s)	105, 115, 286, 612
BstDEI	CTNAG	3 cut(s)	432, 929, 1115
BstF5I	GGATG	5 cut(s)	235, 380, 448, 839, 1036
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	4 cut(s)	51, 242, 520, 732
BstMAI	GTCTC	1 cut(s)	1193
BstMBI	GATC	4 cut(s)	48, 239, 517, 729
BstMWI	GCNNNNNNNGC	3 cut(s)	843, 888, 965
BstNI	CCWGG	1 cut(s)	1214
BstSCI	CCNGG	1 cut(s)	1212
BstSLI	GKGCMC	1 cut(s)	1176
BstV1I	GCAGC	3 cut(s)	353, 619, 945
BstV2I	GAAGAC	1 cut(s)	533
BsuRI	GGCC	1 cut(s)	590
BtsCI	GGATG	5 cut(s)	235, 380, 448, 839, 1036
BtsIMutI	CAGTG	1 cut(s)	863
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	4 cut(s)	105, 115, 286, 612
CaiI	CAGNNNCTG	3 cut(s)	113, 454, 743
CfoI	GCGC	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	1058, 1210
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	5 cut(s)	84, 925, 1063, 1130, 1141
CviAII	CATG	2 cut(s)	29, 1255
CviQI	GTAC	5 cut(s)	84, 925, 1063, 1130, 1141
DdeI	CTNAG	3 cut(s)	432, 929, 1115
DpnI	GATC	4 cut(s)	50, 241, 519, 731
DpnII	GATC	4 cut(s)	48, 239, 517, 729
DraI	TTTAAA	2 cut(s)	985, 1042
Eam1104I	CTCTTC	2 cut(s)	710, 945
EarI	CTCTTC	2 cut(s)	710, 945
Eco130I	CCWWGG	1 cut(s)	1012
Eco147I	AGGCCT	1 cut(s)	590
Eco31I	GGTCTC	1 cut(s)	1193
Eco47I	GGWCC	2 cut(s)	1058, 1210
Eco57I	CTGAAG	3 cut(s)	569, 870, 1118
EcoRII	CCWGG	1 cut(s)	1212
EcoT14I	CCWWGG	1 cut(s)	1012
EcoT22I	ATGCAT	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	1012
FaeI	CATG	2 cut(s)	32, 1258
FalI	AAGNNNNNCTT	2 cut(s)	1005, 1037
FatI	CATG	2 cut(s)	28, 1254
FauNDI	CATATG	1 cut(s)	751
Fnu4HI	GCNGC	3 cut(s)	342, 608, 934
FokI	GGATG	5 cut(s)	242, 387, 455, 846, 1043
Fsp4HI	GCNGC	3 cut(s)	342, 608, 934
FspBI	CTAG	4 cut(s)	9, 611, 615, 843
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	3 cut(s)	342, 608, 934
GsuI	CTGGAG	1 cut(s)	1262
HaeIII	GGCC	1 cut(s)	590
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	2 cut(s)	32, 1258
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HindIII	AAGCTT	3 cut(s)	65, 368, 434
HinfI	GANTC	4 cut(s)	538, 569, 580, 740
HphI	GGTGA	2 cut(s)	835, 1118
Hpy166II	GTNNAC	4 cut(s)	84, 856, 1065, 1174
Hpy188I	TCNGA	3 cut(s)	603, 850, 1116
Hpy188III	TCNNGA	6 cut(s)	142, 173, 251, 573, 1136, 1241
Hpy8I	GTNNAC	4 cut(s)	84, 856, 1065, 1174
HpyAV	CCTTC	7 cut(s)	393, 406, 495, 544, 947, 997, 1193
HpyCH4III	ACNGT	2 cut(s)	185, 1062
HpyCH4IV	ACGT	1 cut(s)	636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	843, 888, 965
HpyF3I	CTNAG	3 cut(s)	432, 929, 1115
HpySE526I	ACGT	1 cut(s)	636
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	32, 1258
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	4 cut(s)	48, 239, 517, 729
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	3 cut(s)	353, 619, 945
LweI	GCATC	6 cut(s)	118, 166, 433, 594, 787, 824
MaeI	CTAG	4 cut(s)	9, 611, 615, 843
MaeII	ACGT	1 cut(s)	636
MaeIII	GTNAC	4 cut(s)	121, 391, 745, 1153
MalI	GATC	4 cut(s)	50, 241, 519, 731
MboI	GATC	4 cut(s)	48, 239, 517, 729
MboII	GAAGA	8 cut(s)	488, 533, 575, 697, 803, 806, 838, 962
MfeI	CAATTG	2 cut(s)	560, 719
MhlI	GDGCHC	1 cut(s)	1176
MluCI	AATT	5 cut(s)	560, 719, 979, 996, 1204
MlyI	GAGTC	2 cut(s)	547, 578
MnlI	CCTC	9 cut(s)	6, 16, 49, 433, 946, 951, 967, 982, 1239
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	1123
MseI	TTAA	6 cut(s)	63, 96, 813, 984, 1041, 1259
MslI	CAYNNNNRTG	1 cut(s)	1259
MspR9I	CCNGG	1 cut(s)	1214
MunI	CAATTG	2 cut(s)	560, 719
MvaI	CCWGG	1 cut(s)	1214
MwoI	GCNNNNNNNGC	3 cut(s)	843, 888, 965
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	4 cut(s)	48, 239, 517, 729
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	32, 1258
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	1153
NsbI	TGCGCA	1 cut(s)	447
NsiI	ATGCAT	1 cut(s)	181
NspV	TTCGAA	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	1123
PfeI	GAWTC	2 cut(s)	580, 740
PflFI	GACNNNGTC	1 cut(s)	874
PkrI	GCNGC	3 cut(s)	343, 609, 935
PleI	GAGTC	2 cut(s)	546, 577
PpsI	GAGTC	2 cut(s)	546, 577
PsiI	TTATAA	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	1212
PspGI	CCWGG	1 cut(s)	1212
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	2 cut(s)	1058, 1210
PstNI	CAGNNNCTG	3 cut(s)	113, 454, 743
PsyI	GACNNNGTC	1 cut(s)	874
RsaI	GTAC	5 cut(s)	85, 926, 1064, 1131, 1142
RsaNI	GTAC	5 cut(s)	84, 925, 1063, 1130, 1141
RseI	CAYNNNNRTG	1 cut(s)	1259
SaqAI	TTAA	6 cut(s)	63, 96, 813, 984, 1041, 1259
SatI	GCNGC	3 cut(s)	342, 608, 934
Sau3AI	GATC	4 cut(s)	48, 239, 517, 729
Sau96I	GGNCC	2 cut(s)	1058, 1210
SchI	GAGTC	2 cut(s)	547, 578
ScrFI	CCNGG	1 cut(s)	1214
SduI	GDGCHC	1 cut(s)	1176
SfaNI	GCATC	6 cut(s)	118, 166, 433, 594, 787, 824
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	2 cut(s)	1058, 1210
SmiMI	CAYNNNNRTG	1 cut(s)	1259
SmlI	CTYRAG	4 cut(s)	142, 251, 437, 507
SmoI	CTYRAG	4 cut(s)	142, 251, 437, 507
Sse9I	AATT	5 cut(s)	560, 719, 979, 996, 1204
SseBI	AGGCCT	1 cut(s)	590
SspMI	CTAG	4 cut(s)	9, 611, 615, 843
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	1 cut(s)	1212
StyI	CCWWGG	1 cut(s)	1012
TaaI	ACNGT	2 cut(s)	185, 1062
TaiI	ACGT	1 cut(s)	639
TaqI	TCGA	2 cut(s)	238, 260
TasI	AATT	5 cut(s)	560, 719, 979, 996, 1204
TatI	WGTACW	3 cut(s)	83, 1129, 1140
TfiI	GAWTC	2 cut(s)	580, 740
Tru1I	TTAA	6 cut(s)	63, 96, 813, 984, 1041, 1259
Tru9I	TTAA	6 cut(s)	63, 96, 813, 984, 1041, 1259
TscAI	CASTG	1 cut(s)	870
TseFI	GTSAC	1 cut(s)	1153
TseI	GCWGC	3 cut(s)	341, 607, 933
Tsp45I	GTSAC	1 cut(s)	1153
TspDTI	ATGAA	3 cut(s)	246, 477, 1243
TspRI	CASTG	1 cut(s)	870
Tth111I	GACNNNGTC	1 cut(s)	874
VneI	GTGCAC	1 cut(s)	1172
VpaK11BI	GGWCC	2 cut(s)	1058, 1210
XapI	RAATTY	2 cut(s)	979, 1204
XmnI	GAANNNNTTC	1 cut(s)	1123
XspI	CTAG	4 cut(s)	9, 611, 615, 843
ZraI	GACGTC	1 cut(s)	637
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.