Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Forward (+)

37922857 .. 37923531

Gene Structure 675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1247700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTTCCCTCAAATTTACGTTCCCTTTCAGCATGTACTATCAAAACTATGTTCATGCCCCTTCTTCCCACTAATTAAACTTATATCTCCATCTTCCTACTACTACTCTCATAAGTTTACAATTTTCTCCACCACTTCAGTTTTCATATCTATCTCTATGGCTCAAACACCCCCTCCTCCAATTCCCAGTCCCATCTCAATAAGAACACTTTGTGATCAAGACCCTAATCATGATCAATTCCAACCCACTCATCATCTCAACTTTATGGTAATCTTGGCAGCAATCTTTTGTGCCTTTGTGTGTGCTCTTGGTCTCAATTCCATGTTACACTGTGTTTTTCAATGCACGAATCGCACCCTCACTGAACCGGTCCAATGGGTAGCTTCACGCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACTTCAACTTACGCTGACTCAGGTACTACTTCTCCATCTTCATCGTCTTCAGGCTGTGCTATCTGTTTGGCAGATTTTTGTGATGGGGACAAGTTAAGGGTGCTGCCCAAGTGCAACCATCGGTTTCATGTTGCCTGCATTGACAAGTGGTTGCTCTGCCACTCTTCGTGTCCGACTTGCCGGCATAGGCTCAAGTCCAGTGACTCCATGCCCTCTCTTTCTGAGATTGTCACAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

24.93

Weight (kDa)

8.62

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	164 - 206	9.3e-13	Ring finger domain
zf-RING_11	PF17123	164 - 192	1.3e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	2 cut(s)	120, 468
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	2 cut(s)	36, 460
AgeI	ACCGGT	1 cut(s)	367
AgsI	TTSAA	2 cut(s)	341, 441
AluBI	AGCT	1 cut(s)	383
AluI	AGCT	1 cut(s)	383
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	317
AoxI	GGCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	278, 538
ApoI	RAATTY	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	290, 525
BccI	CCATC	5 cut(s)	97, 200, 478, 512, 561
BclI	TGATCA	2 cut(s)	214, 232
BcoDI	GTCTC	1 cut(s)	317
BisI	GCNGC	2 cut(s)	279, 539
BlsI	GCNGC	2 cut(s)	280, 540
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmrI	ACTGGG	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	317
BsaWI	WCCGGW	1 cut(s)	367
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 451, 481
Bse118I	RCCGGY	3 cut(s)	367, 390, 615
Bse1I	ACTGG	2 cut(s)	186, 633
BseMII	CTCAG	2 cut(s)	468, 648
BseNI	ACTGG	2 cut(s)	186, 633
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	2 cut(s)	290, 525
BshFI	GGCC	1 cut(s)	405
BshTI	ACCGGT	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	3 cut(s)	368, 391, 616
BslFI	GGGAC	2 cut(s)	174, 536
BsmAI	GTCTC	1 cut(s)	317
BsmFI	GGGAC	2 cut(s)	174, 536
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	214, 232
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	2 cut(s)	467, 649
BspHI	TCATGA	1 cut(s)	229
BspTNI	GGTCTC	1 cut(s)	317
BsrFI	RCCGGY	3 cut(s)	367, 390, 615
BsrI	ACTGG	2 cut(s)	186, 633
BssAI	RCCGGY	3 cut(s)	367, 390, 615
BssMI	GATC	2 cut(s)	214, 232
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	392, 571, 617
BstDEI	CTNAG	2 cut(s)	454, 657
BstKTI	GATC	2 cut(s)	217, 235
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	2 cut(s)	214, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	290, 525
BstV2I	GAAGAC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	328, 360, 640
Cac8I	GCNNGC	3 cut(s)	392, 571, 617
CciI	TCATGA	1 cut(s)	229
Cfr10I	RCCGGY	3 cut(s)	367, 390, 615
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	35, 459
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	6 cut(s)	32, 54, 230, 322, 563, 643
CviJI	RGCY	7 cut(s)	161, 383, 394, 405, 428, 489, 625
CviKI_1	RGCY	7 cut(s)	161, 383, 394, 405, 428, 489, 625
CviQI	GTAC	2 cut(s)	35, 459
DdeI	CTNAG	2 cut(s)	454, 657
DpnI	GATC	2 cut(s)	216, 234
DpnII	GATC	2 cut(s)	214, 232
DraIII	CACNNNGTG	1 cut(s)	212
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
Eco147I	AGGCCT	1 cut(s)	405
Eco31I	GGTCTC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	370
Eco57I	CTGAAG	2 cut(s)	120, 468
FaeI	CATG	6 cut(s)	35, 57, 233, 325, 566, 646
FaqI	GGGAC	2 cut(s)	174, 536
FatI	CATG	6 cut(s)	31, 53, 229, 321, 562, 642
FbaI	TGATCA	2 cut(s)	214, 232
Fnu4HI	GCNGC	2 cut(s)	279, 539
Fsp4HI	GCNGC	2 cut(s)	279, 539
GluI	GCNGC	2 cut(s)	279, 539
HaeIII	GGCC	1 cut(s)	405
HapII	CCGG	3 cut(s)	368, 391, 616
Hin1II	CATG	6 cut(s)	35, 57, 233, 325, 566, 646
HinfI	GANTC	3 cut(s)	349, 452, 638
HpaII	CCGG	3 cut(s)	368, 391, 616
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	2 cut(s)	609, 658
Hpy188III	TCNNGA	2 cut(s)	218, 230
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	70, 409
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	3 cut(s)	345, 549, 573
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	2 cut(s)	454, 657
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	6 cut(s)	35, 57, 233, 325, 566, 646
KroI	GCCGGC	2 cut(s)	390, 615
KroNI	GCCGGC	2 cut(s)	392, 617
Ksp22I	TGATCA	2 cut(s)	214, 232
Kzo9I	GATC	2 cut(s)	214, 232
LpnPI	CCDG	9 cut(s)	199, 381, 387, 404, 441, 471, 583, 629, 646
Lsp1109I	GCAGC	2 cut(s)	290, 525
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	3 cut(s)	324, 635, 664
MalI	GATC	2 cut(s)	216, 234
MboI	GATC	2 cut(s)	214, 232
MboII	GAAGA	6 cut(s)	55, 84, 424, 465, 474, 591
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	7 cut(s)	12, 72, 120, 180, 236, 316, 397
MlyI	GAGTC	2 cut(s)	446, 632
MmeI	TCCRAC	2 cut(s)	265, 632
MnlI	CCTC	5 cut(s)	18, 183, 186, 368, 658
MroNI	GCCGGC	2 cut(s)	390, 615
MseI	TTAA	3 cut(s)	75, 396, 530
MspI	CCGG	3 cut(s)	368, 391, 616
MwoI	GCNNNNNNNGC	1 cut(s)	351
NaeI	GCCGGC	2 cut(s)	392, 617
NdeII	GATC	2 cut(s)	214, 232
NgoMIV	GCCGGC	2 cut(s)	390, 615
NlaIII	CATG	6 cut(s)	35, 57, 233, 325, 566, 646
NmuCI	GTSAC	2 cut(s)	635, 664
NspI	RCATGY	1 cut(s)	35
PagI	TCATGA	1 cut(s)	229
PceI	AGGCCT	1 cut(s)	405
PdiI	GCCGGC	2 cut(s)	392, 617
PfeI	GAWTC	1 cut(s)	349
PinAI	ACCGGT	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	280, 540
PleI	GAGTC	2 cut(s)	446, 632
PpsI	GAGTC	2 cut(s)	446, 632
PspPI	GGNCC	1 cut(s)	370
RsaI	GTAC	2 cut(s)	36, 460
RsaNI	GTAC	2 cut(s)	35, 459
SaqAI	TTAA	3 cut(s)	75, 396, 530
SatI	GCNGC	2 cut(s)	279, 539
Sau3AI	GATC	2 cut(s)	214, 232
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	2 cut(s)	446, 632
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	4 cut(s)	21, 385, 460, 674
SinI	GGWCC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	7 cut(s)	12, 72, 120, 180, 236, 316, 397
SseBI	AGGCCT	1 cut(s)	405
StuI	AGGCCT	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	332
TaiI	ACGT	1 cut(s)	21
TasI	AATT	7 cut(s)	12, 72, 120, 180, 236, 316, 397
TatI	WGTACW	1 cut(s)	34
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	3 cut(s)	75, 396, 530
Tru9I	TTAA	3 cut(s)	75, 396, 530
TscAI	CASTG	3 cut(s)	335, 367, 640
TseFI	GTSAC	2 cut(s)	635, 664
TseI	GCWGC	2 cut(s)	278, 538
Tsp45I	GTSAC	2 cut(s)	635, 664
TspDTI	ATGAA	4 cut(s)	42, 133, 465, 551
TspRI	CASTG	3 cut(s)	335, 367, 640
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.