Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Forward (+)

24746857 .. 24747843

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCTTTGTGTTATGGGTATGAGAAGTTATGTAACGGTGAATCTATGTCATGTAAGTCCTCTTATTTAAGGACTATTTTTCTTATAAAACAACGTTTGGGTTCTTCAATATCAAGAGTTATATTTTCTTTAATCGCAAATCACAATCTTATACATATATGTTTTAAGGTCACAACAAAAAACTTTATGTATACATTATTTTCTCCTCTTCTTTCTATTTTCCCTCAAATTTACGTTCCCTTTCAACACGTACTATCAAAACTATGTTCATGCCCCTTCTCTCCACTAATTAAACTTATATCTCCATCTTCCCACTACTACTCTCATAAGTTTACAATTTTCTCCACCACTTCAGTTTTCATATTTATCTCTATGGCTCAAACACCCCCTCCTTCAATTCCCAGTCCCATCTCAATAAGAACACTTTGTGACCAAGACCCTAATCATGATCAATTCCAACCCACTCATCATCTCAACTTTATGGTCATCTTGGCAGCAATCTTTTGTGCCCTTGTGTGTGCTCTTGGTCTCAATTCCATGTTATACTGTGTTTTTCAATGCACGAATCGCACCCTCACTGAACCGGTCCAATGGGTAGCTTCACTCCGGCTTAATTCAGGCCTAAAGAAGAAGGAAATGGTGGCTTTGCCTACATCAACTTACGCTGATTCAGGTACTACTTCTCCATCTTCATCGTCTTCAGGCTGCGCTATCTGTTTGGCAGATTTTTGTGATGGGGACAAGTTAAGGGCGCTGCCCAAGTGCAACCATCGGTTTCATGTTGCCTGCATTGACAAGTGGTTGCTCTGCCACTCTTCGTGTCCGACTTGCCGGCATAGGCTCAAGTCCAGTGACTCCATGACCTCTCTTTCTGAGATTGTCACAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

297

Amino Acids

33.04

Weight (kDa)

8.89

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	191
AclI	AACGTT	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	336, 684
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	252, 676
AflIII	ACRYGT	1 cut(s)	247
AgeI	ACCGGT	1 cut(s)	583
AgsI	TTSAA	4 cut(s)	108, 245, 396, 557
AluBI	AGCT	1 cut(s)	599
AluI	AGCT	1 cut(s)	599
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	3 cut(s)	494, 705, 754
ApoI	RAATTY	1 cut(s)	228
AsiGI	ACCGGT	1 cut(s)	583
AspLEI	GCGC	2 cut(s)	710, 754
AspS9I	GGNCC	1 cut(s)	586
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	586
BaeGI	GKGCMC	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	506, 692, 741
BccI	CCATC	5 cut(s)	313, 416, 694, 728, 777
BclI	TGATCA	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	755
BisI	GCNGC	3 cut(s)	495, 706, 755
BlsI	GCNGC	3 cut(s)	496, 707, 756
Bme18I	GGWCC	1 cut(s)	586
BmgT120I	GGNCC	1 cut(s)	586
BmrI	ACTGGG	1 cut(s)	396
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	690
BpuEI	CTTGAG	1 cut(s)	827
BsaAI	YACGTR	1 cut(s)	250
BsaI	GGTCTC	1 cut(s)	533
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	4 cut(s)	373, 403, 667, 697
Bse118I	RCCGGY	2 cut(s)	583, 831
Bse1I	ACTGG	2 cut(s)	402, 849
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	2 cut(s)	402, 849
BseRI	GAGGAG	1 cut(s)	195
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	3 cut(s)	506, 692, 741
BshFI	GGCC	1 cut(s)	621
BshTI	ACCGGT	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	3 cut(s)	584, 607, 832
BslFI	GGGAC	2 cut(s)	390, 752
BsmAI	GTCTC	1 cut(s)	533
BsmFI	GGGAC	2 cut(s)	390, 752
BsnI	GGCC	1 cut(s)	621
Bso31I	GGTCTC	1 cut(s)	533
Bsp1286I	GDGCHC	2 cut(s)	511, 523
Bsp143I	GATC	1 cut(s)	448
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	445
BspTNI	GGTCTC	1 cut(s)	533
BsrFI	RCCGGY	2 cut(s)	583, 831
BsrI	ACTGG	2 cut(s)	402, 849
BssAI	RCCGGY	2 cut(s)	583, 831
BssMI	GATC	1 cut(s)	448
BssNAI	GTATAC	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	38, 548
Bst6I	CTCTTC	2 cut(s)	213, 820
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	787, 833
BstDEI	CTNAG	1 cut(s)	873
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	2 cut(s)	710, 754
BstKTI	GATC	1 cut(s)	451
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	567
BstSLI	GKGCMC	1 cut(s)	511
BstV1I	GCAGC	3 cut(s)	506, 692, 741
BstV2I	GAAGAC	1 cut(s)	690
BstZ17I	GTATAC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	621
BtsIMutI	CAGTG	2 cut(s)	576, 856
Cac8I	GCNNGC	2 cut(s)	787, 833
CciI	TCATGA	1 cut(s)	445
CfoI	GCGC	2 cut(s)	710, 754
Cfr10I	RCCGGY	2 cut(s)	583, 831
Cfr13I	GGNCC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	251, 675
CspAI	ACCGGT	1 cut(s)	583
CviAII	CATG	6 cut(s)	51, 270, 446, 538, 779, 859
CviJI	RGCY	7 cut(s)	377, 599, 610, 621, 644, 705, 841
CviKI_1	RGCY	7 cut(s)	377, 599, 610, 621, 644, 705, 841
CviQI	GTAC	2 cut(s)	251, 675
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
DraIII	CACNNNGTG	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	213, 820
EarI	CTCTTC	2 cut(s)	213, 820
Eco147I	AGGCCT	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	533
Eco47I	GGWCC	1 cut(s)	586
Eco57I	CTGAAG	2 cut(s)	336, 684
FaeI	CATG	6 cut(s)	54, 273, 449, 541, 782, 862
FaqI	GGGAC	2 cut(s)	390, 752
FatI	CATG	6 cut(s)	50, 269, 445, 537, 778, 858
FbaI	TGATCA	1 cut(s)	448
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	3 cut(s)	495, 706, 755
Fsp4HI	GCNGC	3 cut(s)	495, 706, 755
GlaI	GCGC	2 cut(s)	709, 753
GluI	GCNGC	3 cut(s)	495, 706, 755
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	3 cut(s)	584, 607, 832
HhaI	GCGC	2 cut(s)	710, 754
Hin1II	CATG	6 cut(s)	54, 273, 449, 541, 782, 862
Hin6I	GCGC	2 cut(s)	708, 752
HinP1I	GCGC	2 cut(s)	708, 752
HinfI	GANTC	4 cut(s)	41, 565, 668, 854
HpaII	CCGG	3 cut(s)	584, 607, 832
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	192, 333
Hpy188I	TCNGA	2 cut(s)	825, 874
Hpy188III	TCNNGA	2 cut(s)	114, 446
Hpy8I	GTNNAC	2 cut(s)	192, 333
HpyAV	CCTTC	3 cut(s)	286, 402, 625
HpyCH4III	ACNGT	2 cut(s)	38, 548
HpyCH4IV	ACGT	3 cut(s)	94, 234, 249
HpyCH4V	TGCA	3 cut(s)	561, 765, 789
HpyF10VI	GCNNNNNNNGC	1 cut(s)	567
HpyF3I	CTNAG	1 cut(s)	873
HpySE526I	ACGT	3 cut(s)	94, 234, 249
Hsp92II	CATG	6 cut(s)	54, 273, 449, 541, 782, 862
HspAI	GCGC	2 cut(s)	708, 752
KroI	GCCGGC	1 cut(s)	831
KroNI	GCCGGC	1 cut(s)	833
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	448
LpnPI	CCDG	9 cut(s)	415, 597, 603, 620, 657, 687, 799, 845, 862
Lsp1109I	GCAGC	3 cut(s)	506, 692, 741
MaeII	ACGT	3 cut(s)	94, 234, 249
MaeIII	GTNAC	5 cut(s)	32, 169, 428, 851, 880
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	7 cut(s)	96, 200, 300, 640, 681, 690, 807
MhlI	GDGCHC	2 cut(s)	511, 523
MluCI	AATT	7 cut(s)	228, 288, 336, 396, 452, 532, 613
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	2 cut(s)	481, 848
MnlI	CCTC	6 cut(s)	70, 216, 234, 399, 584, 874
MroNI	GCCGGC	1 cut(s)	831
MseI	TTAA	6 cut(s)	68, 131, 165, 291, 612, 746
MspI	CCGG	3 cut(s)	584, 607, 832
MwoI	GCNNNNNNNGC	1 cut(s)	567
NaeI	GCCGGC	1 cut(s)	833
NdeII	GATC	1 cut(s)	448
NgoMIV	GCCGGC	1 cut(s)	831
NlaIII	CATG	6 cut(s)	54, 273, 449, 541, 782, 862
NmuCI	GTSAC	4 cut(s)	169, 428, 851, 880
PagI	TCATGA	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	621
PdiI	GCCGGC	1 cut(s)	833
PfeI	GAWTC	3 cut(s)	41, 565, 668
PinAI	ACCGGT	1 cut(s)	583
PkrI	GCNGC	3 cut(s)	496, 707, 756
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	250
PsiI	TTATAA	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	586
RsaI	GTAC	2 cut(s)	252, 676
RsaNI	GTAC	2 cut(s)	251, 675
SaqAI	TTAA	6 cut(s)	68, 131, 165, 291, 612, 746
SatI	GCNGC	3 cut(s)	495, 706, 755
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	1 cut(s)	586
SchI	GAGTC	1 cut(s)	848
SduI	GDGCHC	2 cut(s)	511, 523
SetI	ASST	8 cut(s)	97, 171, 237, 252, 601, 676, 866, 890
SinI	GGWCC	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	842
SmoI	CTYRAG	1 cut(s)	842
Sse9I	AATT	7 cut(s)	228, 288, 336, 396, 452, 532, 613
SseBI	AGGCCT	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	621
TaaI	ACNGT	2 cut(s)	38, 548
TaiI	ACGT	3 cut(s)	97, 237, 252
TasI	AATT	7 cut(s)	228, 288, 336, 396, 452, 532, 613
TfiI	GAWTC	3 cut(s)	41, 565, 668
Tru1I	TTAA	6 cut(s)	68, 131, 165, 291, 612, 746
Tru9I	TTAA	6 cut(s)	68, 131, 165, 291, 612, 746
TscAI	CASTG	2 cut(s)	583, 856
TseFI	GTSAC	4 cut(s)	169, 428, 851, 880
TseI	GCWGC	3 cut(s)	494, 705, 754
Tsp45I	GTSAC	4 cut(s)	169, 428, 851, 880
TspDTI	ATGAA	4 cut(s)	258, 349, 681, 767
TspRI	CASTG	2 cut(s)	583, 856
VpaK11BI	GGWCC	1 cut(s)	586
XapI	RAATTY	1 cut(s)	228
XmiI	GTMKAC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.