Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Reverse (-)

15569298 .. 15570348

Gene Structure 1051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG152300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGCTCAAACACCCCCTCCAACTCCAACTCCAACTCCTAGTCCTACTTCAATTAGAACAGTACTACTTCGTCACCAAAACCCTCCTGATCATGATATAAATCCACCCCCTCATGATCTCAATGTTATGATCATTTTGGCAGCCATTTGCTGCGCTTTTGTTTGTGCCCTAGGCCTCAATTCCATGCTCCAATGCGTTTTTCAGTGCGCAAATCGTACCATAACCGAACCAGTCCGATGGGTCGCTTCACGTAGGCTAAATTCAGGTCTAAAGAAGAAGGAAATGGTAGCTTTGCCAACTTCAACTTATTCGAACTCATCAAGCTCTTCTACATCACCATCATCATCTCCGGGCTGTGCTATTTGTCTCGTGGACTTCTCCGATGGGGACAAGATTCGGGTGCTGCCCAAATGCAACCATCGGTTTCATGTTGTGTGCATTGACAAGTGGTTGCAGTCTCACTCATCCTGCCCTACTTGCCGGCAGAGACTCAAGTCTTCCAGTGATTCCATGCTCTCTCTATCTGAGATTGTCACAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

180

Amino Acids

19.63

Weight (kDa)

8.84

Isoelectric Point (pI)

59.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	119 - 161	3.9e-15	Ring finger domain
zf-RING_11	PF17123	119 - 147	1.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	119 - 160	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	119 - 160	4.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	129 - 165	1.6e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	132 - 161	2.5e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	2 cut(s)	63, 217
AgsI	TTSAA	2 cut(s)	51, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	290, 324
AluI	AGCT	2 cut(s)	290, 324
Alw26I	GTCTC	3 cut(s)	371, 462, 481
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	140, 150, 403
ApoI	RAATTY	1 cut(s)	259
AspA2I	CCTAGG	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	155, 209
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	65, 327
AsuII	TTCGAA	1 cut(s)	311
AvrII	CCTAGG	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	3 cut(s)	137, 152, 390
BccI	CCATC	4 cut(s)	231, 346, 377, 426
BclI	TGATCA	2 cut(s)	88, 129
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	3 cut(s)	371, 462, 481
BfaI	CTAG	3 cut(s)	39, 170, 541
BisI	GCNGC	3 cut(s)	141, 151, 404
BlnI	CCTAGG	1 cut(s)	169
BlsI	GCNGC	3 cut(s)	142, 152, 405
BmcAI	AGTACT	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	351
BoxI	GACNNNNGTC	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	351
BsaAI	YACGTR	1 cut(s)	251
BsaBI	GATNNNNATC	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	5 cut(s)	13, 19, 31, 43, 49
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	230, 501
Bse8I	GATNNNNATC	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	464
BseJI	GATNNNNATC	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	230, 501
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	3 cut(s)	137, 152, 390
BshFI	GGCC	1 cut(s)	174
BsiSI	CCGG	2 cut(s)	350, 481
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	3 cut(s)	371, 462, 481
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	88, 115, 129
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	517
BspHI	TCATGA	2 cut(s)	91, 112
BspQI	GCTCTTC	1 cut(s)	331
BspT104I	TTCGAA	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	230, 501
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	3 cut(s)	88, 115, 129
BssSI	CACGAG	1 cut(s)	368
BssT1I	CCWWGG	1 cut(s)	169
Bst2BI	CACGAG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	1 cut(s)	464
BstHHI	GCGC	2 cut(s)	155, 209
BstKTI	GATC	3 cut(s)	91, 118, 132
BstMAI	GTCTC	3 cut(s)	371, 462, 481
BstMBI	GATC	3 cut(s)	88, 115, 129
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstPAI	GACNNNNGTC	1 cut(s)	493
BstSCI	CCNGG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	169
BstV1I	GCAGC	3 cut(s)	137, 152, 390
BstV2I	GAAGAC	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	209, 508
Cac8I	GCNNGC	1 cut(s)	482
CciI	TCATGA	2 cut(s)	91, 112
CfoI	GCGC	2 cut(s)	155, 209
Cfr10I	RCCGGY	1 cut(s)	480
Csp6I	GTAC	2 cut(s)	62, 216
CviAII	CATG	5 cut(s)	92, 113, 184, 428, 511
CviJI	RGCY	7 cut(s)	5, 143, 174, 256, 290, 324, 354
CviKI_1	RGCY	7 cut(s)	5, 143, 174, 256, 290, 324, 354
CviQI	GTAC	2 cut(s)	62, 216
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	3 cut(s)	90, 117, 131
DpnII	GATC	3 cut(s)	88, 115, 129
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	169
Eco147I	AGGCCT	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	5 cut(s)	95, 116, 187, 431, 514
FaiI	YATR	8 cut(s)	93, 98, 114, 128, 185, 221, 429, 512
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	5 cut(s)	91, 112, 183, 427, 510
FbaI	TGATCA	2 cut(s)	88, 129
Fnu4HI	GCNGC	3 cut(s)	141, 151, 404
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	3 cut(s)	141, 151, 404
FspBI	CTAG	3 cut(s)	39, 170, 541
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	2 cut(s)	154, 208
GluI	GCNGC	3 cut(s)	141, 151, 404
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	350, 481
HhaI	GCGC	2 cut(s)	155, 209
Hin1II	CATG	5 cut(s)	95, 116, 187, 431, 514
Hin6I	GCGC	2 cut(s)	153, 207
HinP1I	GCGC	2 cut(s)	153, 207
HinfI	GANTC	3 cut(s)	394, 489, 506
HpaII	CCGG	2 cut(s)	350, 481
HphI	GGTGA	2 cut(s)	65, 327
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	236, 382, 526
Hpy188III	TCNNGA	3 cut(s)	86, 92, 113
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	414, 438, 454
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	5 cut(s)	95, 116, 187, 431, 514
HspAI	GCGC	2 cut(s)	153, 207
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Ksp22I	TGATCA	2 cut(s)	88, 129
Kzo9I	GATC	3 cut(s)	88, 115, 129
LguI	GCTCTTC	1 cut(s)	331
LmnI	GCTCC	1 cut(s)	192
LpnPI	CCDG	7 cut(s)	99, 243, 249, 363, 481, 494, 514
Lsp1109I	GCAGC	3 cut(s)	137, 152, 390
MaeI	CTAG	3 cut(s)	39, 170, 541
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	2 cut(s)	71, 532
MalI	GATC	3 cut(s)	90, 117, 131
MboI	GATC	3 cut(s)	88, 115, 129
MboII	GAAGA	3 cut(s)	286, 318, 489
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	3 cut(s)	51, 178, 259
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	3 cut(s)	44, 50, 56
MnlI	CCTC	4 cut(s)	27, 93, 120, 185
MroNI	GCCGGC	1 cut(s)	480
MspI	CCGG	2 cut(s)	350, 481
MspR9I	CCNGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	1 cut(s)	477
NaeI	GCCGGC	1 cut(s)	482
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	3 cut(s)	88, 115, 129
NgoMIV	GCCGGC	1 cut(s)	480
NlaIII	CATG	5 cut(s)	95, 116, 187, 431, 514
NmuCI	GTSAC	2 cut(s)	71, 532
NsbI	TGCGCA	1 cut(s)	208
NspV	TTCGAA	1 cut(s)	311
PagI	TCATGA	2 cut(s)	91, 112
PceI	AGGCCT	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	394, 506
PkrI	GCNGC	3 cut(s)	142, 152, 405
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	251
PshAI	GACNNNNGTC	1 cut(s)	493
RsaI	GTAC	2 cut(s)	63, 217
RsaNI	GTAC	2 cut(s)	62, 216
SapI	GCTCTTC	1 cut(s)	331
SatI	GCNGC	3 cut(s)	141, 151, 404
Sau3AI	GATC	3 cut(s)	88, 115, 129
ScaI	AGTACT	1 cut(s)	63
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	5 cut(s)	253, 268, 292, 326, 542
SfuI	TTCGAA	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	491
SmoI	CTYRAG	1 cut(s)	491
Sse9I	AATT	3 cut(s)	51, 178, 259
SseBI	AGGCCT	1 cut(s)	174
SspMI	CTAG	3 cut(s)	39, 170, 541
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	1 cut(s)	311
TasI	AATT	3 cut(s)	51, 178, 259
TatI	WGTACW	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	394, 506
TscAI	CASTG	2 cut(s)	209, 508
TseFI	GTSAC	2 cut(s)	71, 532
TseI	GCWGC	3 cut(s)	140, 150, 403
Tsp45I	GTSAC	2 cut(s)	71, 532
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	2 cut(s)	209, 508
XapI	RAATTY	1 cut(s)	259
XmaJI	CCTAGG	1 cut(s)	169
XspI	CTAG	3 cut(s)	39, 170, 541
ZrmI	AGTACT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.