Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0016786

Physical Location & Seq

Genomic Coordinates Reverse (-)

15403837 .. 15404727

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG151800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTCAAACACCCCCTCCAACTCCAACTCCAATTCCAACTCCAACTCCTAGTCCTACTTCAATTAGAACAGTACTACTGCGTCACCAAAACCCTCCTGATCATGATATAAATCCACCCCCTCATGATCTCAATGTTATGATCATTTTGGCAGCCATTTGTTGCGCTTTTGTTTGTGCCCTCGGCCTCAATTCCATGCTCCAATGCGTTTTTCAGTGCGTAAATCGTGCCATAACCGAACCAGTCCGATGGGTCGCTTCACGTAGGCTAAATTCAGGTCTAAAGAAGAAGGAAATGGTAGCTTTGCCAACTTCAACTTATTCGAACTCATCAAGCTCTTCTCCATCACCATCATCATCTCCGGGCTGTGCTATTTGTCTCGTGGACTTCTCCGATGGGGACAAGATTCGGGTACTGCCCAAATGCAACCATCGGTTTCATGTTGTGTGCATTGACAAGTGGTTGCAGTCTCACTCATCCTGCCCTACTTGCCGGCAGAGACTCAAGTCTTCCAGTGATTCCATGCTCTCTCTATCTGAGATTGTCACAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009555 GO:0009791 GO:0009889 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010498 GO:0010565 GO:0010817 GO:0016567 GO:0016740 GO:0019216 GO:0019217 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0022414 GO:0030163 GO:0031323 GO:0031326 GO:0032350 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0036211 GO:0042304 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0046885 GO:0046890 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0061458 GO:0061630 GO:0061659 GO:0062012 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0080090 GO:0080140 GO:0080141 GO:0090567 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

184

Amino Acids

20.03

Weight (kDa)

8.84

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	123 - 165	4.1e-15	Ring finger domain
zf-RING_11	PF17123	123 - 151	1.4e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	123 - 164	1.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	123 - 164	4.8e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	133 - 169	1.6e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	136 - 165	2.4e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g12790
malus_domestica	MD05G1247700.v1.1 MD10G1228500.v1.1
prunus_persica	Prupe.4G116300_v2.0.a1
pyrus_communis	pycom05g22380
rosa_chinensis	RchiOBHm_Chr5g0020761
rosa_laevigata	RLG00000032559
rosa_roxburghii	Rroxscaffold_1G00057540
rosa_rugosa	Rorug05G0062800
rosa_samantha	Rh5AG152600 Rh5BG152300 Rh5CG163800 Rh5DG151800
rosa_wichuraiana	Rw5G013530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	2 cut(s)	75, 414
AgsI	TTSAA	2 cut(s)	63, 315
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	2 cut(s)	302, 336
AluI	AGCT	2 cut(s)	302, 336
Alw26I	GTCTC	3 cut(s)	383, 474, 493
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	77, 339
AsuII	TTCGAA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	5 cut(s)	243, 352, 358, 389, 438
BclI	TGATCA	2 cut(s)	100, 141
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	3 cut(s)	383, 474, 493
BfaI	CTAG	2 cut(s)	51, 553
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmcAI	AGTACT	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	363
BoxI	GACNNNNGTC	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	323
BpuEI	CTTGAG	1 cut(s)	488
BpuMI	CCSGG	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	263
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	181
BsaXI	ACNNNNNCTCC	5 cut(s)	13, 31, 31, 43, 61
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	242, 513
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	476
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	242, 513
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	186
BsiSI	CCGG	2 cut(s)	362, 493
BslFI	GGGAC	1 cut(s)	413
BsmAI	GTCTC	3 cut(s)	383, 474, 493
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	1 cut(s)	186
Bsp119I	TTCGAA	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	3 cut(s)	100, 127, 141
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	529
BspHI	TCATGA	2 cut(s)	103, 124
BspQI	GCTCTTC	1 cut(s)	343
BspT104I	TTCGAA	1 cut(s)	323
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	2 cut(s)	242, 513
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	3 cut(s)	100, 127, 141
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	343
BstBAI	YACGTR	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	537
BstF5I	GGATG	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	103, 130, 144
BstMAI	GTCTC	3 cut(s)	383, 474, 493
BstMBI	GATC	3 cut(s)	100, 127, 141
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstPAI	GACNNNNGTC	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	361
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	164
BstV2I	GAAGAC	1 cut(s)	501
BstXI	CCANNNNNNTGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	476
BtsIMutI	CAGTG	2 cut(s)	221, 520
Cac8I	GCNNGC	1 cut(s)	494
CciI	TCATGA	2 cut(s)	103, 124
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	492
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	2 cut(s)	74, 413
CviAII	CATG	5 cut(s)	104, 125, 196, 440, 523
CviJI	RGCY	7 cut(s)	5, 155, 186, 268, 302, 336, 366
CviKI_1	RGCY	7 cut(s)	5, 155, 186, 268, 302, 336, 366
CviQI	GTAC	2 cut(s)	74, 413
DdeI	CTNAG	1 cut(s)	537
DpnI	GATC	3 cut(s)	102, 129, 143
DpnII	GATC	3 cut(s)	100, 127, 141
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
FaeI	CATG	5 cut(s)	107, 128, 199, 443, 526
FaiI	YATR	8 cut(s)	105, 110, 126, 140, 197, 233, 441, 524
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	5 cut(s)	103, 124, 195, 439, 522
FbaI	TGATCA	2 cut(s)	100, 141
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	463
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	2 cut(s)	51, 553
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	186
HapII	CCGG	2 cut(s)	362, 493
HgaI	GACGC	1 cut(s)	71
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	5 cut(s)	107, 128, 199, 443, 526
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HinfI	GANTC	3 cut(s)	406, 501, 518
HpaII	CCGG	2 cut(s)	362, 493
HphI	GGTGA	2 cut(s)	77, 339
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	248, 394, 538
Hpy188III	TCNNGA	3 cut(s)	98, 104, 125
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	283
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	426, 450, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	1 cut(s)	537
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	5 cut(s)	107, 128, 199, 443, 526
HspAI	GCGC	1 cut(s)	165
KroI	GCCGGC	1 cut(s)	492
KroNI	GCCGGC	1 cut(s)	494
Ksp22I	TGATCA	2 cut(s)	100, 141
Kzo9I	GATC	3 cut(s)	100, 127, 141
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	111, 255, 261, 375, 493, 506, 526
Lsp1109I	GCAGC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	51, 553
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	2 cut(s)	83, 544
MalI	GATC	3 cut(s)	102, 129, 143
MboI	GATC	3 cut(s)	100, 127, 141
MboII	GAAGA	3 cut(s)	298, 330, 501
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	33, 63, 190, 271
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	4 cut(s)	44, 50, 62, 68
MnlI	CCTC	5 cut(s)	27, 105, 132, 191, 197
MroNI	GCCGGC	1 cut(s)	492
MspI	CCGG	2 cut(s)	362, 493
MspR9I	CCNGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	489
NaeI	GCCGGC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	100, 127, 141
NgoMIV	GCCGGC	1 cut(s)	492
NlaIII	CATG	5 cut(s)	107, 128, 199, 443, 526
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	2 cut(s)	83, 544
NspV	TTCGAA	1 cut(s)	323
PagI	TCATGA	2 cut(s)	103, 124
PciSI	GCTCTTC	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	406, 518
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	495
PpsI	GAGTC	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	505
RsaI	GTAC	2 cut(s)	75, 414
RsaNI	GTAC	2 cut(s)	74, 413
SapI	GCTCTTC	1 cut(s)	343
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	3 cut(s)	100, 127, 141
ScaI	AGTACT	1 cut(s)	75
SchI	GAGTC	1 cut(s)	495
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	5 cut(s)	265, 280, 304, 338, 554
SfuI	TTCGAA	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	4 cut(s)	33, 63, 190, 271
SspMI	CTAG	2 cut(s)	51, 553
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	323
TasI	AATT	4 cut(s)	33, 63, 190, 271
TatI	WGTACW	1 cut(s)	73
TfiI	GAWTC	2 cut(s)	406, 518
TscAI	CASTG	2 cut(s)	221, 520
TseFI	GTSAC	2 cut(s)	83, 544
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	2 cut(s)	83, 544
TspDTI	ATGAA	1 cut(s)	428
TspRI	CASTG	2 cut(s)	221, 520
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	2 cut(s)	51, 553
ZrmI	AGTACT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.